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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054795 ID=TCONS_00054795|Name=TCONS_00054795|organism=Clytia hemisphaerica|type=transcript|length=447bp
CTCTCAGGAAAATTGGACTCTCTTGTAGCTCTCTGTGCGTATAGCCGCTT
GAAATTCGTATACATCGGTATGTCGTCCCATGAAAGAGAGCTTATTCTCC
TAAAGGTTAAGGAGTTCAAAAATCGAACGAAGAAACCTATTCTTGAAAGA
ATCCAATTAATGAAAAGCTGGAAGCACGCTACCTTGATTACACCTCAAGA
TTTGCACCAATGGGGTCATTCCGAACACGTTCAAGGCGTTATCGAATTCC
TTGCCAACATTTCGTACAGTTCCAATCCGAAAATGGGAAAAGTCACTATT
GCACAAGCCTGTGACGTTCGCAATTATTTAATGATCAATATAACTATCAT
CAATGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGAGGATATCG
CCAAAGCGGCCCCAACAACACCTGGAGACGGTTTTTGTGGCTTTGAA Run BLAST on NCBI protein sequence of TCONS_00054795-protein >TCONS_00054795-protein ID=TCONS_00054795-protein|Name=TCONS_00054795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
LSGKLDSLVALCAYSRLKFVYIGMSSHERELILLKVKEFKNRTKKPILER
IQLMKSWKHATLITPQDLHQWGHSEHVQGVIEFLANISYSSNPKMGKVTI
AQACDVRNYLMINITIINGARASNLMNISLEDIAKAAPTTPGDGFCGFE Run BLAST on NCBI transcript from alignment at scaffold_245:906380..907294+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054795 ID=TCONS_00054795|Name=TCONS_00054795|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at scaffold_245:906380..907294+ (Clytia hemisphaerica)
CTCTCAGGAAAATTGGACTCTCTTGTAGCTCTCTGTGCGTATAGCCGCTT
GAAATTCGTATACATCGGTATGTCGTCCCATGAAAGAGAGCTTATTCTCC
TAAAGGTTAAGGAGTTCAAAAATCGAACGAAGAAACCTATTCTTGAAAGG
TAAATTGCAGTTCTTTCATAATTCTTCCTTCTTACCGTTTAAATCGTTGA
AAAAAGGCGTGTTCTAGTAACAAAGCAAGTTATCTTTTCAGAGGCATTTT
TTTCAGTTTGTTTAANTATAATTCTTCCTTTTTACCGTTTAAATCGTTGA
AATCGTTGGCGTGTTCTAGTAAAAAAGCAAGTTATCTTTTCAGAGGCATT
TTTTTCAGTTTGTTTAATGCTCATCGAATCTTCTTTTAGAATCCAATTAA
TGAAAAGCTGGAAGCACGCTACCTTGATTACACCTCAAGATTTGCACCAA
TGGGGTCATTCCGAACACGTTCAAGGCGTTATCGAATTCCTTGCCAACAT
TTCGTACAGTTCCAATCCGAAAATGGGAAAAGTCACTATTGCACAAgtaa
gattttcttttgaatattattttatatctttattaagaatatcagggtga
aaattggcgaAATCGTAAGAAATTGTTaaatttaatagattttgatgagC
AAAATAGTCGTTTTCTACAACTTTTTTCTTCGAATGACTTTAATTACGTT
TTGTCGATTAGTGGTTTTATTTCCTTATTCGAGAAgccatttttaaaata
attttgtaatcTATATTTCTTCAGGCCTGTGACGTTCGCAATTATTTAAT
GATCAATATAACTATCATCAATGGAGCTCGAGCCTCAAATCTTATGAATA
TTTCGTTGGAGGATATCGCCAAAGCGGCCCCAACAACACCTGGAGACGGT
TTTTGTGGCTTTGAA Coding sequence (CDS) from alignment at scaffold_245:906380..907294+ >TCONS_00054795 ID=TCONS_00054795|Name=TCONS_00054795|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_245:906380..907294+ (Clytia hemisphaerica)
CTCTCAGGAAAATTGGACTCTCTTGTAGCTCTCTGTGCGTATAGCCGCTT
GAAATTCGTATACATCGGTATGTCGTCCCATGAAAGAGAGCTTATTCTCC
TAAAGGTTAAGGAGTTCAAAAATCGAACGAAGAAACCTATTCTTGAAAGA
ATCCAATTAATGAAAAGCTGGAAGCACGCTACCTTGATTACACCTCAAGA
TTTGCACCAATGGGGTCATTCCGAACACGTTCAAGGCGTTATCGAATTCC
TTGCCAACATTTCGTACAGTTCCAATCCGAAAATGGGAAAAGTCACTATT
GCACAAGCCTGTGACGTTCGCAATTATTTAATGATCAATATAACTATCAT
CAATGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGAGGATATCG
CCAAAGCGGCCCCAACAACACCTGGAGACGGTTTTTGTGGCTTTGAACTC
TCAGGAAAATTGGACTCTCTTGTAGCTCTCTGTGCGTATAGCCGCTTGAA
ATTCGTATACATCGGTATGTCGTCCCATGAAAGAGAGCTTATTCTCCTAA
AGGTTAAGGAGTTCAAAAATCGAACGAAGAAACCTATTCTTGAAAGAATC
CAATTAATGAAAAGCTGGAAGCACGCTACCTTGATTACACCTCAAGATTT
GCACCAATGGGGTCATTCCGAACACGTTCAAGGCGTTATCGAATTCCTTG
CCAACATTTCGTACAGTTCCAATCCGAAAATGGGAAAAGTCACTATTGCA
CAAGCCTGTGACGTTCGCAATTATTTAATGATCAATATAACTATCATCAA
TGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGAGGATATCGCCA
AAGCGGCCCCAACAACACCTGGAGACGGTTTTTGTGGCTTTGAACTCTCA
GGAAAATTGGACTCTCTTGTAGCTCTCTGTGCGTATAGCCGCTTGAAATT
CGTATACATCGGTATGTCGTCCCATGAAAGAGAGCTTATTCTCCTAAAGG
TTAAGGAGTTCAAAAATCGAACGAAGAAACCTATTCTTGAAAGAATCCAA
TTAATGAAAAGCTGGAAGCACGCTACCTTGATTACACCTCAAGATTTGCA
CCAATGGGGTCATTCCGAACACGTTCAAGGCGTTATCGAATTCCTTGCCA
ACATTTCGTACAGTTCCAATCCGAAAATGGGAAAAGTCACTATTGCACAA
GCCTGTGACGTTCGCAATTATTTAATGATCAATATAACTATCATCAATGG
AGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGAGGATATCGCCAAAG
CGGCCCCAACAACACCTGGAGACGGTTTTTGTGGCTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054795-exon-scaffold_245-1491911889:906380..906528 | TCONS_00054795-exon-scaffold_245-1491911889:906380..906528 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1510915933:906380..906528 | TCONS_00054795-exon-scaffold_245-1510915933:906380..906528 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1575043694:906380..906528 | TCONS_00054795-exon-scaffold_245-1575043694:906380..906528 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1491911889:906769..906925 | TCONS_00054795-exon-scaffold_245-1491911889:906769..906925 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1510915933:906769..906925 | TCONS_00054795-exon-scaffold_245-1510915933:906769..906925 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1575043694:906769..906925 | TCONS_00054795-exon-scaffold_245-1575043694:906769..906925 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1491911889:907154..907294 | TCONS_00054795-exon-scaffold_245-1491911889:907154..907294 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1510915933:907154..907294 | TCONS_00054795-exon-scaffold_245-1510915933:907154..907294 | Clytia hemisphaerica | exon |
| TCONS_00054795-exon-scaffold_245-1575043694:907154..907294 | TCONS_00054795-exon-scaffold_245-1575043694:907154..907294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:906380..907294 + |
Blast
The following BLAST results are available for this feature:
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