TCONS_00054923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054923
Unique NameTCONS_00054923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054923 ID=TCONS_00054923|Name=TCONS_00054923|organism=Clytia hemisphaerica|type=transcript|length=371bp
GTCATATTTAACATGATTTTCAACGATTTACGAAATACACAATACAGTTT
ATTCAAACCAATGAGCAATCGGTACCAGCAACGGATGTGTTCAAATATTC
TGAATCGAAATACACTTTGCAATTCTCACCACCAACCAAAAGTGAAGTGG
TGCATTCTGCGAATTGTCGACCTCTGTATTTGCCACCATATTGAGTATTT
TGAAGAGGGTCAATGATTTTTCCATCTACTGTCAATGAAGTTCCAGGGAT
GGCTGGTATTTCAACCATCAAACCGAGGTTCAACAATTGAGGTTCCACTG
AATGTGGCAATTCACCAAGACGCACGACCTGCAGAGGAAGATAGAAAAAC
ATGTTTATTTTACTATGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00054923-protein

>TCONS_00054923-protein ID=TCONS_00054923-protein|Name=TCONS_00054923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
FHSKINMFFYLPLQVVRLGELPHSVEPQLLNLGLMVEIPAIPGTSLTVDG
KIIDPLQNTQYGGKYRGRQFAECTTSLLVGGENCKVYFDSEYLNTSVAGT
DCSLV
Run BLAST on NCBI

transcript from alignment at scaffold_246:82868..83238

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054923 ID=TCONS_00054923|Name=TCONS_00054923|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_246:82868..83238 (Clytia hemisphaerica)
CTTTCATAGTAAAATAAACATGTTTTTCTATCTTCCTCTGCAGGTCGTGC
GTCTTGGTGAATTGCCACATTCAGTGGAACCTCAATTGTTGAACCTCGGT
TTGATGGTTGAAATACCAGCCATCCCTGGAACTTCATTGACAGTAGATGG
AAAAATCATTGACCCTCTTCAAAATACTCAATATGGTGGCAAATACAGAG
GTCGACAATTCGCAGAATGCACCACTTCACTTTTGGTTGGTGGTGAGAAT
TGCAAAGTGTATTTCGATTCAGAATATTTGAACACATCCGTTGCTGGTAC
CGATTGCTCATTGGTTTGAATAAACTGTATTGTGTATTTCGTAAATCGTT
GAAAATCATGTTAAATATGAC

Coding sequence (CDS) from alignment at scaffold_246:82868..83238

>TCONS_00054923 ID=TCONS_00054923|Name=TCONS_00054923|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_246:82868..83238 (Clytia hemisphaerica)
TTTCATAGTAAAATAAACATGTTTTTCTATCTTCCTCTGCAGGTCGTGCG
TCTTGGTGAATTGCCACATTCAGTGGAACCTCAATTGTTGAACCTCGGTT
TGATGGTTGAAATACCAGCCATCCCTGGAACTTCATTGACAGTAGATGGA
AAAATCATTGACCCTCTTCAAAATACTCAATATGGTGGCAAATACAGAGG
TCGACAATTCGCAGAATGCACCACTTCACTTTTGGTTGGTGGTGAGAATT
GCAAAGTGTATTTCGATTCAGAATATTTGAACACATCCGTTGCTGGTACC
GATTGCTCATTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034610XLOC_034610Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054923-proteinTCONS_00054923-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054923-exon-scaffold_246-1491911889:82868..83238TCONS_00054923-exon-scaffold_246-1491911889:82868..83238Clytia hemisphaericaexon
TCONS_00054923-exon-scaffold_246-1510915933:82868..83238TCONS_00054923-exon-scaffold_246-1510915933:82868..83238Clytia hemisphaericaexon
TCONS_00054923-exon-scaffold_246-1575043694:82868..83238TCONS_00054923-exon-scaffold_246-1575043694:82868..83238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:82868..83238 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
154.575	157.724	110.697	97.3491	0.295332	0.700125	0.281557	0.527181	0.738183	0.22859	0.714667	0.87511	0.145649	0	0.373064	0.266903	0.164401	0	0.4656	1.4851	1.0587	0.309838	84.0853	69.8892	1.41077	1.46893	3.80477	5.61609	59.0965	63.8365
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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