TCONS_00056402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056402
Unique NameTCONS_00056402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056402 ID=TCONS_00056402|Name=TCONS_00056402|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CCCAAATCCACTAATATTTCATTCTAAACTATAGCCAACTATCATTTTGC
ATGTTCCAAAGAATTACTTTAAAAGTGCTCAAAACAATAAATAAACTGCA
CTTCCTTCTAGATTTCGACTGGAAAAACCACTCCAAGCGGAGCATTATGA
tcaggaaaaagtcaaaatgatgACCAAAAATATCCTCAGGAAGGGTAAAG
ATACTCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGT
CAGAACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGT
TGGGTATTTAACTGGCAACAATACAACATTACAATTAGAAGCTGTTTGGT
GTTTAACAAATATCACTGctaatgaaaatcaaaatattgaaacctTCGTG
AAAGCTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCT
CTTACAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCC
ATAACATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACT
GAACTGGTTGAGAGTGATGTTGGAGAAGTTGTCCAATCATCACTTTTCGC
TATATGCAATCTTTGTAAAAGTTTACAATCTTTTGTACCACTGGTCTTTA
CTCCACgattcatcaaaatcattttcaaactaTTAAATTGTGCTGACACA
AACATTTTCATAGTTGGGGACATTGCTTGGCTTCTCGTTCATTTTTCTTG
GAATAAATCTGGTTGTAATTTGTTGATGGAGTATgattttatcaatgttt
tgatgaaaaaggtGAAACTGTTGTCACCTGGCACCCAAGAATATCTTTAT
GTTGTTCTACCAAGCCTTAGAGTGATAGGGAACGTTTTTGGTAACCAAGA
TGATGTTAACAATTTGCAATCGGACCCGTCTTTATTTCACGATATTGTTC
AAACAGCAAATACGATTTTATTAAGATTCCAGGCTAAGGAATATGTGATC
AAAGAATGTCTATGGATGATCAGTAATCTGTTTTCATGTCCCATGGAAGA
TCACCTTTCGAATGAAGTTGTTTTGAGAGACgtacaaaaagttgttttta
ataTCATGTCCAATTTTAAGAGTAGTAATCGAGACATTCAGAAAGAGGCT
GCTGTTTGCTTTTGTAATCTCTCACACCAACCCTTGATGCAACAtttcaa
agatattttaacatctGAAGATATTGTGCTTAATTTCATGGAATTCTTAA
GAATGGATGATTTGGATCTGATCTGGATTTCATTGTCatattttgatttg
ttgttgaATGAGGATAAAATGAAAGTAATCTTTCAGAAACATAATGGACT
CTCTTATTTGGACGCGTTTCAACACCACCCAAATGAAAATATTAGAAGCA
AATCATTTCAGATTTTACAAACTTTTGGAACAGCTCATCCATCTTGATAT
CTTGGTTTTagcattttaaaacattttgttgtGATTTTATATTGTATAAT
TATATAATACGCTTTgtatagaaataaaaaattgaatgatACGAATTTCG
ATAATACTCG
Run BLAST on NCBI

protein sequence of TCONS_00056402-protein

>TCONS_00056402-protein ID=TCONS_00056402-protein|Name=TCONS_00056402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MMTKNILRKGKDTQNHLKYLRNAFAESCQNIDAFLEVDNALYTLVGYLTG
NNTTLQLEAVWCLTNITANENQNIETFVKATSAYLITFLKSGSVLLQDQS
AWALGNMAADSHNIREILKAQGIVKPLTELVESDVGEVVQSSLFAICNLC
KSLQSFVPLVFTPRFIKIIFKLLNCADTNIFIVGDIAWLLVHFSWNKSGC
NLLMEYDFINVLMKKVKLLSPGTQEYLYVVLPSLRVIGNVFGNQDDVNNL
QSDPSLFHDIVQTANTILLRFQAKEYVIKECLWMISNLFSCPMEDHLSNE
VVLRDVQKVVFNIMSNFKSSNRDIQKEAAVCFCNLSHQPLMQHFKDILTS
EDIVLNFMEFLRMDDLDLIWISLSYFDLLLNEDKMKVIFQKHNGLSYLDA
FQHHPNENIRSKSFQILQTFGTAHPS
Run BLAST on NCBI

transcript from alignment at scaffold_276:348..2944+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056402 ID=TCONS_00056402|Name=TCONS_00056402|organism=Clytia hemisphaerica|type=transcript|length=2597bp|location=Sequence derived from alignment at scaffold_276:348..2944+ (Clytia hemisphaerica)
CCCAAATCCACTAATATTTCATTCTAAACTATAGCCAACTATCATTTTGC
ATGTTCCAAAGAATTACTTTAAAAGTGCTCAAAACAATAAATAAACTGCA
CTTCCTTCTAGATTTCGACTGGAAAAACCACTCCAAGCGGAGCATTATGA
tcaggaaaaagtcaaaatgatgACCAAAAATATCCTCAGGAAGGGTAAAG
ATACTCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGT
CAGAACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGT
TGGGTATTTAACTGGCAACAATACAACATTACAATTAGAAGCTGTTTGGT
GTTTAACAAATATCACTGctaatgaaaatcaaaatattgaaacctTCGTG
AAAGCTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCT
CTTACAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCC
ATAACATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACT
GAACTGGTTGAGgtaattgtttttattcttttgatatGGTATGATATGAC
CAGAATTCACTCCTTGCTTTATCATTATTAAATCATGCCCATAGTTTGTT
CATATATAaatattcgacaagaaaaatcgaaaaatcgtaaaaacaGTTAA
GTATGATGTCATCAAGCGGTACTGGATTTTTTTcgactttcaatttttca
gcattaaagcattaaagatataggaaaaataaatatagAGAAAAATTAGG
GACCAGATTCCAGCTATCCCTGTTATTAAACTTAATTGTTTATAAAATGA
GGTAGGGTAGAAAGATCATAGTCACCAACTGAAAAACTTCtgaaagaaat
aaagaactcACAATTGCaattatctttgttttttagAGTGATGTTGGAGA
AGTTGTCCAATCATCACTTTTCGCTATATGCAATCTTTGTAAAAGTTTAC
AATCTTTTGTACCACTGGTCTTTACTCCACgattcatcaaaatcattttc
aaactaTTAAATTGTGCTGACACAAACATTTTCATAGTTGGGGACATTGC
TTGGCTTCTCGTTCATTTTTCTTGGAATAAATCTGGTTGTAATTTGNAAT
TTTCATTATTGGTGACATTGCTTGGCTTCTCGTTCATTTTTCTTGGAATA
AATCTGGTTGTAATTTGTTGATGGAGTATgattttatcaatgttttgatg
aaaaaggtGAAACTGTTGTCACCTGGCACCCAAGAATATCTTTATGTTGT
TCTACCAAGCCTTAGAGTGATAGGTATAATGAATGTTTATTAATCAGAGT
CTCTCAGATAAAGCTATTATGGTCAACTGATGCTATCATTAACTTTCACA
AGATAAAACATCTTCCTGAAGACTGAGTTCTTGTCATTATTGAATGGATT
AAATTTTGTGTGAATTTTCACAGATTTTTAGGCCgattttgcaaaatatt
gtCCTCGCGAAAAATTTGTAATCAAGATTTTTGTTGAAGTGTAAGAAATC
GGGAGAAAAAGATGCCTACTCATGCGAAAATTTTTCATCTTCCAATTCGA
GAAAAAAGTTAACGCAAAATTTCATCCACTTGAGGTATCCATGTATCATT
CATGAAAAGTGGCTTTTTGgtgataaaaaaattatgtgTTGTCATTTTAG
GGAACGTTTTTGGTAACCAAGATGATGTTAACAATTTGCAATCGGACCCG
TCTTTATTTCACGATATTGTTCAAACAGCAAATACGATTTTATTAAGATT
CCAGGCTAAGGAATATGTGATCAAAGAATGTCTATGGATGATCAGTAATC
TGTTTTCATGTCCCATGGAAGATCACCTTTCGAATGAAGTTGTTTTGAGA
GACgtacaaaaagttgtttttaataTCATGTCCAATTTTAAGAGTAGTAA
TCGAGACATTCAGAAAGAGGTAAAGAtgtttacactttttttttaaagaa
catcacattttttaagcctttggatgttcttaactttttgacttttctta
acatgttcttattttcgccattttctgaaaagccttaaaatgtttttaat
ttgttcttaacattttggccatcgaagccttatgttcttgtatagtttgt
tcttataaaaaaacgtgtacataatTTCTTACAGGCTGCTGTTTGCTTTT
GTAATCTCTCACACCAACCCTTGATGCAACAtttcaaagatattttaaca
tctGAAGATATTGTGCTTAATTTCATGGAATTCTTAAGAATGGATGATTT
GGATCTGATCTGGATTTCATTGTCatattttgatttgttgttgaATGAGG
ATAAAATGAAAGTAATCTTTCAGAAACATAATGGACTCTCTTATTTGGAC
GCGTTTCAACACCACCCAAATGAAAATATTAGAAGCAAATCATTTCAGAT
TTTACAAACTTTTGGAACAGCTCATCCATCTTGATATCTTGGTTTTagca
ttttaaaacattttgttgtGATTTTATATTGTATAATTATATAATACGCT
TTgtatagaaataaaaaattgaatgatACGAATTTCGATAATACTCG

Coding sequence (CDS) from alignment at scaffold_276:348..2944+

>TCONS_00056402 ID=TCONS_00056402|Name=TCONS_00056402|organism=Clytia hemisphaerica|type=CDS|length=6405bp|location=Sequence derived from alignment at scaffold_276:348..2944+ (Clytia hemisphaerica)
atgatgACCAAAAATATCCTCAGGAAGGGTAAAGATACTCAAAATCATTT
GAAATACTTAAGAAATGCTTTCGCTGAATCGTGTCAGAACATTGATGCTT
TTTTGGAGGTTGACAATGCCCTTTACACACTTGTTGGGTATTTAACTGGC
AACAATACAACATTACAATTAGAAGCTGTTTGGTGTTTAACAAATATCAC
TGctaatgaaaatcaaaatattgaaacctTCGTGAAAGCTACTTCAGCAT
ACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCTCTTACAAGATCAAAGT
GCATGGGCATTGGGTAATATGGCAGCTGATAGCCATAACATTAGGGAAAT
ATTGAAAGCTCAAGGGATTGTGAAGCCACTCACTGAACTGGTTGAGAGTG
ATGTTGGAGAAGTTGTCCAATCATCACTTTTCGCTATATGCAATCTTTGT
AAAAGTTTACAATCTTTTGTACCACTGGTCTTTACTCCACgattcatcaa
aatcattttcaaactaTTAAATTGTGCTGACACAAACATTTTCATAGTTG
GGGACATTGCTTGGCTTCTCGTTCATTTTTCTTGGAATAAATCTGGTTGT
AATTTGTTGATGGAGTATgattttatcaatgttttgatgaaaaaggtGAA
ACTGTTGTCACCTGGCACCCAAGAATATCTTTATGTTGTTCTACCAAGCC
TTAGAGTGATAGGGAACGTTTTTGGTAACCAAGATGATGTTAACAATTTG
CAATCGGACCCGTCTTTATTTCACGATATTGTTCAAACAGCAAATACGAT
TTTATTAAGATTCCAGGCTAAGGAATATGTGATCAAAGAATGTCTATGGA
TGATCAGTAATCTGTTTTCATGTCCCATGGAAGATCACCTTTCGAATGAA
GTTGTTTTGAGAGACgtacaaaaagttgtttttaataTCATGTCCAATTT
TAAGAGTAGTAATCGAGACATTCAGAAAGAGGCTGCTGTTTGCTTTTGTA
ATCTCTCACACCAACCCTTGATGCAACAtttcaaagatattttaacatct
GAAGATATTGTGCTTAATTTCATGGAATTCTTAAGAATGGATGATTTGGA
TCTGATCTGGATTTCATTGTCatattttgatttgttgttgaATGAGGATA
AAATGAAAGTAATCTTTCAGAAACATAATGGACTCTCTTATTTGGACGCG
TTTCAACACCACCCAAATGAAAATATTAGAAGCAAATCATTTCAGATTTT
ACAAACTTTTGGAACAGCTCATCCATCTTGAatgatgACCAAAAATATCC
TCAGGAAGGGTAAAGATACTCAAAATCATTTGAAATACTTAAGAAATGCT
TTCGCTGAATCGTGTCAGAACATTGATGCTTTTTTGGAGGTTGACAATGC
CCTTTACACACTTGTTGGGTATTTAACTGGCAACAATACAACATTACAAT
TAGAAGCTGTTTGGTGTTTAACAAATATCACTGctaatgaaaatcaaaat
attgaaacctTCGTGAAAGCTACTTCAGCATACTTGATTACTTTCTTGAA
AAGTGGGAGTGTTCTCTTACAAGATCAAAGTGCATGGGCATTGGGTAATA
TGGCAGCTGATAGCCATAACATTAGGGAAATATTGAAAGCTCAAGGGATT
GTGAAGCCACTCACTGAACTGGTTGAGAGTGATGTTGGAGAAGTTGTCCA
ATCATCACTTTTCGCTATATGCAATCTTTGTAAAAGTTTACAATCTTTTG
TACCACTGGTCTTTACTCCACgattcatcaaaatcattttcaaactaTTA
AATTGTGCTGACACAAACATTTTCATAGTTGGGGACATTGCTTGGCTTCT
CGTTCATTTTTCTTGGAATAAATCTGGTTGTAATTTGTTGATGGAGTATg
attttatcaatgttttgatgaaaaaggtGAAACTGTTGTCACCTGGCACC
CAAGAATATCTTTATGTTGTTCTACCAAGCCTTAGAGTGATAGGGAACGT
TTTTGGTAACCAAGATGATGTTAACAATTTGCAATCGGACCCGTCTTTAT
TTCACGATATTGTTCAAACAGCAAATACGATTTTATTAAGATTCCAGGCT
AAGGAATATGTGATCAAAGAATGTCTATGGATGATCAGTAATCTGTTTTC
ATGTCCCATGGAAGATCACCTTTCGAATGAAGTTGTTTTGAGAGACgtac
aaaaagttgtttttaataTCATGTCCAATTTTAAGAGTAGTAATCGAGAC
ATTCAGAAAGAGGCTGCTGTTTGCTTTTGTAATCTCTCACACCAACCCTT
GATGCAACAtttcaaagatattttaacatctGAAGATATTGTGCTTAATT
TCATGGAATTCTTAAGAATGGATGATTTGGATCTGATCTGGATTTCATTG
TCatattttgatttgttgttgaATGAGGATAAAATGAAAGTAATCTTTCA
GAAACATAATGGACTCTCTTATTTGGACGCGTTTCAACACCACCCAAATG
AAAATATTAGAAGCAAATCATTTCAGATTTTACAAACTTTTGGAACAGCT
CATCCATCTTGAatgatgACCAAAAATATCCTCAGGAAGGGTAAAGATAC
TCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGTCAGA
ACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGTTGGG
TATTTAACTGGCAACAATACAACATTACAATTAGAAGCTGTTTGGTGTTT
AACAAATATCACTGctaatgaaaatcaaaatattgaaacctTCGTGAAAG
CTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCTCTTA
CAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCCATAA
CATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACTGAAC
TGGTTGAGAGTGATGTTGGAGAAGTTGTCCAATCATCACTTTTCGCTATA
TGCAATCTTTGTAAAAGTTTACAATCTTTTGTACCACTGGTCTTTACTCC
ACgattcatcaaaatcattttcaaactaTTAAATTGTGCTGACACAAACA
TTTTCATAGTTGGGGACATTGCTTGGCTTCTCGTTCATTTTTCTTGGAAT
AAATCTGGTTGTAATTTGTTGATGGAGTATgattttatcaatgttttgat
gaaaaaggtGAAACTGTTGTCACCTGGCACCCAAGAATATCTTTATGTTG
TTCTACCAAGCCTTAGAGTGATAGGGAACGTTTTTGGTAACCAAGATGAT
GTTAACAATTTGCAATCGGACCCGTCTTTATTTCACGATATTGTTCAAAC
AGCAAATACGATTTTATTAAGATTCCAGGCTAAGGAATATGTGATCAAAG
AATGTCTATGGATGATCAGTAATCTGTTTTCATGTCCCATGGAAGATCAC
CTTTCGAATGAAGTTGTTTTGAGAGACgtacaaaaagttgtttttaataT
CATGTCCAATTTTAAGAGTAGTAATCGAGACATTCAGAAAGAGGCTGCTG
TTTGCTTTTGTAATCTCTCACACCAACCCTTGATGCAACAtttcaaagat
attttaacatctGAAGATATTGTGCTTAATTTCATGGAATTCTTAAGAAT
GGATGATTTGGATCTGATCTGGATTTCATTGTCatattttgatttgttgt
tgaATGAGGATAAAATGAAAGTAATCTTTCAGAAACATAATGGACTCTCT
TATTTGGACGCGTTTCAACACCACCCAAATGAAAATATTAGAAGCAAATC
ATTTCAGATTTTACAAACTTTTGGAACAGCTCATCCATCTTGAatgatgA
CCAAAAATATCCTCAGGAAGGGTAAAGATACTCAAAATCATTTGAAATAC
TTAAGAAATGCTTTCGCTGAATCGTGTCAGAACATTGATGCTTTTTTGGA
GGTTGACAATGCCCTTTACACACTTGTTGGGTATTTAACTGGCAACAATA
CAACATTACAATTAGAAGCTGTTTGGTGTTTAACAAATATCACTGctaat
gaaaatcaaaatattgaaacctTCGTGAAAGCTACTTCAGCATACTTGAT
TACTTTCTTGAAAAGTGGGAGTGTTCTCTTACAAGATCAAAGTGCATGGG
CATTGGGTAATATGGCAGCTGATAGCCATAACATTAGGGAAATATTGAAA
GCTCAAGGGATTGTGAAGCCACTCACTGAACTGGTTGAGAGTGATGTTGG
AGAAGTTGTCCAATCATCACTTTTCGCTATATGCAATCTTTGTAAAAGTT
TACAATCTTTTGTACCACTGGTCTTTACTCCACgattcatcaaaatcatt
ttcaaactaTTAAATTGTGCTGACACAAACATTTTCATAGTTGGGGACAT
TGCTTGGCTTCTCGTTCATTTTTCTTGGAATAAATCTGGTTGTAATTTGT
TGATGGAGTATgattttatcaatgttttgatgaaaaaggtGAAACTGTTG
TCACCTGGCACCCAAGAATATCTTTATGTTGTTCTACCAAGCCTTAGAGT
GATAGGGAACGTTTTTGGTAACCAAGATGATGTTAACAATTTGCAATCGG
ACCCGTCTTTATTTCACGATATTGTTCAAACAGCAAATACGATTTTATTA
AGATTCCAGGCTAAGGAATATGTGATCAAAGAATGTCTATGGATGATCAG
TAATCTGTTTTCATGTCCCATGGAAGATCACCTTTCGAATGAAGTTGTTT
TGAGAGACgtacaaaaagttgtttttaataTCATGTCCAATTTTAAGAGT
AGTAATCGAGACATTCAGAAAGAGGCTGCTGTTTGCTTTTGTAATCTCTC
ACACCAACCCTTGATGCAACAtttcaaagatattttaacatctGAAGATA
TTGTGCTTAATTTCATGGAATTCTTAAGAATGGATGATTTGGATCTGATC
TGGATTTCATTGTCatattttgatttgttgttgaATGAGGATAAAATGAA
AGTAATCTTTCAGAAACATAATGGACTCTCTTATTTGGACGCGTTTCAAC
ACCACCCAAATGAAAATATTAGAAGCAAATCATTTCAGATTTTACAAACT
TTTGGAACAGCTCATCCATCTTGAatgatgACCAAAAATATCCTCAGGAA
GGGTAAAGATACTCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTG
AATCGTGTCAGAACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTAC
ACACTTGTTGGGTATTTAACTGGCAACAATACAACATTACAATTAGAAGC
TGTTTGGTGTTTAACAAATATCACTGctaatgaaaatcaaaatattgaaa
cctTCGTGAAAGCTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGG
AGTGTTCTCTTACAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGC
TGATAGCCATAACATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGC
CACTCACTGAACTGGTTGAGAGTGATGTTGGAGAAGTTGTCCAATCATCA
CTTTTCGCTATATGCAATCTTTGTAAAAGTTTACAATCTTTTGTACCACT
GGTCTTTACTCCACgattcatcaaaatcattttcaaactaTTAAATTGTG
CTGACACAAACATTTTCATAGTTGGGGACATTGCTTGGCTTCTCGTTCAT
TTTTCTTGGAATAAATCTGGTTGTAATTTGTTGATGGAGTATgattttat
caatgttttgatgaaaaaggtGAAACTGTTGTCACCTGGCACCCAAGAAT
ATCTTTATGTTGTTCTACCAAGCCTTAGAGTGATAGGGAACGTTTTTGGT
AACCAAGATGATGTTAACAATTTGCAATCGGACCCGTCTTTATTTCACGA
TATTGTTCAAACAGCAAATACGATTTTATTAAGATTCCAGGCTAAGGAAT
ATGTGATCAAAGAATGTCTATGGATGATCAGTAATCTGTTTTCATGTCCC
ATGGAAGATCACCTTTCGAATGAAGTTGTTTTGAGAGACgtacaaaaagt
tgtttttaataTCATGTCCAATTTTAAGAGTAGTAATCGAGACATTCAGA
AAGAGGCTGCTGTTTGCTTTTGTAATCTCTCACACCAACCCTTGATGCAA
CAtttcaaagatattttaacatctGAAGATATTGTGCTTAATTTCATGGA
ATTCTTAAGAATGGATGATTTGGATCTGATCTGGATTTCATTGTCatatt
ttgatttgttgttgaATGAGGATAAAATGAAAGTAATCTTTCAGAAACAT
AATGGACTCTCTTATTTGGACGCGTTTCAACACCACCCAAATGAAAATAT
TAGAAGCAAATCATTTCAGATTTTACAAACTTTTGGAACAGCTCATCCAT
CTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035546XLOC_035546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056402-exon-scaffold_276-1491911889:348..909TCONS_00056402-exon-scaffold_276-1491911889:348..909Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1510915933:348..909TCONS_00056402-exon-scaffold_276-1510915933:348..909Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1575043694:348..909TCONS_00056402-exon-scaffold_276-1575043694:348..909Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1491911889:1284..1442TCONS_00056402-exon-scaffold_276-1491911889:1284..1442Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1510915933:1284..1442TCONS_00056402-exon-scaffold_276-1510915933:1284..1442Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1575043694:1284..1442TCONS_00056402-exon-scaffold_276-1575043694:1284..1442Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1491911889:1514..1670TCONS_00056402-exon-scaffold_276-1491911889:1514..1670Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1510915933:1514..1670TCONS_00056402-exon-scaffold_276-1510915933:1514..1670Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1575043694:1514..1670TCONS_00056402-exon-scaffold_276-1575043694:1514..1670Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1491911889:2048..2316TCONS_00056402-exon-scaffold_276-1491911889:2048..2316Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1510915933:2048..2316TCONS_00056402-exon-scaffold_276-1510915933:2048..2316Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1575043694:2048..2316TCONS_00056402-exon-scaffold_276-1575043694:2048..2316Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1491911889:2532..2944TCONS_00056402-exon-scaffold_276-1491911889:2532..2944Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1510915933:2532..2944TCONS_00056402-exon-scaffold_276-1510915933:2532..2944Clytia hemisphaericaexon
TCONS_00056402-exon-scaffold_276-1575043694:2532..2944TCONS_00056402-exon-scaffold_276-1575043694:2532..2944Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056402-proteinTCONS_00056402-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:348..2944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3752	33.214	35.1671	35.5926	10.846	6.95428	7.88558	8.93999	7.2445	7.02634	7.28217	6.53053	6.11957	5.73158	7.0733	7.25019	9.35387	9.09611	5.75419	7.91654	12.746	7.7377	29.1424	31.6042	10.2088	13.3199	10.772	9.26165	16.0878	19.7953
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00056402 vs. Swiss-Prot (Human)
Match: IMA4 (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 5.095e-20
Identity = 90/383 (23.50%), Postives = 172/383 (44.91%), Query Frame = 2 
Query:  317 NNTTLQLEAVWCLTNITANENQNIETFVKATSAYL-ITFLKSGSVLLQDQSAWALGNMAADSHNIREILKAQGIVKPLTELVESDVG-EVVQSSLFAICNLCKSLQSFVPLVFTPRFIKIIFKLLNCADTNIFIVGDIAWLLVHFS-WNKSGCNLLMEYDFINVLMKKVKLLSPGTQEYLYVVLPSLRVIGNVFGNQDDVNNLQSDPSLFHDIVQTANTILLRFQAKEYVIKECLWMISNLFSCPMEDHLSNEVVLRDV--QKVVFNIMSNFKSSNRDIQKEAAVCFCNLSHQPLMQHFKD---ILTSEDIVLNFMEFLRMDDLDLIWISLSYFD--LLLNEDKMKV---IFQKHNGLSYLDAFQHHPNENIRSKSFQILQTF 1426
            +N +LQ EA W LTNI +  +   +  V++ +  L +  L+S    + +Q+ WALGN+  D    R+ + + G+VKPL   +   +    +++  + I NLC++     P+      +  +  L+   D NI +  D  W L + +        ++++   +  L   V LLS    + + V   +LR +GN+    D+    Q+   L  D++     +L     KE + KE +W +SN+ +        N+  ++ V    ++  I+      +   QKEAA    NL+    +   KD    L  ++++  F   L + D  ++ + L      L++  D+      I ++  GL  ++  Q H NE+I   +F+I+  +
Sbjct:  127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILV--DTVWALSYLTDGGNEQIQMVIDSGVVPFL---VPLLS---HQEVKVQTAALRAVGNIVTGTDE----QTQVVLNCDVLSHFPNLL--SHPKEKINKEAVWFLSNITA-------GNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLT----ISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQY 484
The following BLAST results are available for this feature:
BLAST of TCONS_00056402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMA45.095e-2023.50Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 ... [more]
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