TCONS_00056406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056406
Unique NameTCONS_00056406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056406 ID=TCONS_00056406|Name=TCONS_00056406|organism=Clytia hemisphaerica|type=transcript|length=873bp
TTCGTCGTTCAGCTCGCGTCTTCGCTCCCCAAACATGGATGGGATTCTAA
GCGGTTTTCCGTTGAGACTTCGAGATACAGCAAGGTCTTGCTCATGAATT
TTGTTGTCTTTTCTCTCAAGCTCTGCCAACGATAATTCTCGCTTTTCGTT
GTCGCTCAGCTCTCGTCTTCGTTCCCCAAGCATGGATGGGATTCTAAGAG
GTTTTCCGTTGAGACTTCGAGATGCAGCAAGGTCTTGCTCATGGATTTCG
TTGTCTTTTCTCTCAAGTTCTGCCAACGATAATTCTCGCTTTTCGTCGTT
CAGCTCGCGTCTTTGTTCCCCAAACATGGATGGGATTCTAAGCGGTTTTC
CGTTGAGACTTCGAGATGCAGCAAGGTCTTGCTCATAGATTTCGTTGTCT
TTTCTCTCAAGTTCTGCCAACGATAATTCTCGTTTTTCGTCGTTCAGCTC
GCGTCTTCGCTCCCCAAACATGGATGCGATTCTAAGCGGTTTTCCGTTGA
GACTTCGAGATGCAGCAAGGTCTTGCTCATGGATTTCGTTGTCTTTTCTC
TCAAGTTCTGCTAACGATATTTCTCGATTTTCGTCGTCACCATCCATTCC
TAATCTTTCTGCGGAGGTTTCCTTAACATCCAACTCTCTCTCTTGTTCCA
ATGGAAACGGATCATCTTTTTCAATAACATCGTAATAATATCTTCCGAGA
TTTCCGAACTCCCGTCGATTGGGAAGCGGCCAGGAGTGTGATCTTCTACT
CATGTAATCCATATAACTGTCATCTTCGATGGCACGTGCACACAAAATGA
AACTTGTCAATATGATAAACCACTTCATGTCGGCTCCTACAATGAttata
aatttgaataattaaaaataaag
Run BLAST on NCBI

transcript from alignment at scaffold_276:29160..30608+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056406 ID=TCONS_00056406|Name=TCONS_00056406|organism=Clytia hemisphaerica|type=transcript|length=1449bp|location=Sequence derived from alignment at scaffold_276:29160..30608+ (Clytia hemisphaerica)
TTCGTCGTTCAGCTCGCGTCTTCGCTCCCCAAACATGGATGGGATTCTAA
GCGGTTTTCCGTTGAGACTTCGAGATACAGCAAGGTCTTGCTCATGAATT
TTGTTGTCTTTTCTCTCAAGCTCTGCCAACGATAATTCTCGCTTTTCGTT
GTCGCTCAGCTCTCGTCTTCGTTCCCCAAGCATGGATGGGATTCTAAGAG
GTTTTCCGTTGAGACTTCGAGATACAGCAAGGTCTTGCTCATGGATTTCG
TTGTCTTTTCTCTCAAGCTCTACCAACGATAATTCTCGCTTTTCGTCGTT
CAGCTCGCGTCTTCGCTCCCCAAACATGGATGGGATTCTAAGAGGTTTTC
CGTTAAGCCTTCGAGATGCAGCAAGGTCTTGCTCATGGATTTCGTTGTCT
TTTCTCTCAAGTTCTGCCAACGATAATTCTCGCTTTTCGTCGTTCAGCTC
GCGTCTTTGTTCCCCAAACATGGATGGGATTCTAAGCGGTTTTCCGTTGA
GACTTCGAGATGCAGCAAGGTCTTGCTCATGGATTTCGTTGTCTTTTCTC
TCAAGCTCTGCCAACGATAATTCTCGTTTTTCGTCGTTCAGCTCGCGTCT
TCGCTCCCCAAACATGGATGGGATTCTAAGCGGTTTTCCGTTGAGACTTC
GAGATGCAGCAAGGTCTTGCTCATAGATTTCGTTGTCTTTTCTCTCAAGT
TCTGCCAACGATAATTCTCGTTTTTCGTCGTTCAGCTCGCGTCTTCGCTC
CCCAAACATGGATGCGATTCTAAGCGGTTTTCCGTTGAGACTTCGAGATG
CAGCAAGGTCTTGCTCATGGATTTCGTTGTCTTTTCTCTCAAGCTCTGCC
AACGATAATTCTCGTTTTTCGTCGTTCAGCTCGCGTCTTCGCTCCCCAAA
CATGGATGCGATTCTAAGAGGTTTTCCGTTGAGACTTCGAGATGCAGCAA
GGTCTTGCTCATGGATTTCGTTGTCTTTTCTCTCGAGTTCTGCCAACGAT
AATTCTCGCTTTTCGTCGTTCAGCACGCGTCTTTGTTCCCCAAACATGGA
TGGGATTCTAAGCGGTTTTCCGTTGAGACTTCGAGATACAGCAAGGTCTT
GCTCATGGATTTCGTTGTCTTTTCTCTCAAGTTCTGCTAACGATATTTCT
CGATTTTCGTCGTCACCATCCATTCCTAATCTTTCTGCGGAGGTTTCCTT
AACATCCAACTCTCTCTCTTGTTCCAATGGAAACGGATCATCTTTTTCAA
TAACATCGTAATAATATCTTCCGAGATTTCCGAACTCCCGTCGATTGGGA
AGCGGCCAGGAGTGTGATCTTCTACTCATGTAATCCATATAACTGTCATC
TTCGATGGCACGTGCACACAAAATGAAACTTGTCAATATGATAAACCACT
TCATGTCGGCTCCTACAATGAttataaatttgaataattaaaaataaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035547XLOC_035547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056406-exon-scaffold_276-1491911889:29160..29373TCONS_00056406-exon-scaffold_276-1491911889:29160..29373Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1510915933:29160..29373TCONS_00056406-exon-scaffold_276-1510915933:29160..29373Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1575043694:29160..29373TCONS_00056406-exon-scaffold_276-1575043694:29160..29373Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1491911889:29518..29628TCONS_00056406-exon-scaffold_276-1491911889:29518..29628Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1510915933:29518..29628TCONS_00056406-exon-scaffold_276-1510915933:29518..29628Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1575043694:29518..29628TCONS_00056406-exon-scaffold_276-1575043694:29518..29628Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1491911889:29773..29935TCONS_00056406-exon-scaffold_276-1491911889:29773..29935Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1510915933:29773..29935TCONS_00056406-exon-scaffold_276-1510915933:29773..29935Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1575043694:29773..29935TCONS_00056406-exon-scaffold_276-1575043694:29773..29935Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1491911889:30080..30110TCONS_00056406-exon-scaffold_276-1491911889:30080..30110Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1510915933:30080..30110TCONS_00056406-exon-scaffold_276-1510915933:30080..30110Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1575043694:30080..30110TCONS_00056406-exon-scaffold_276-1575043694:30080..30110Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1491911889:30255..30608TCONS_00056406-exon-scaffold_276-1491911889:30255..30608Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1510915933:30255..30608TCONS_00056406-exon-scaffold_276-1510915933:30255..30608Clytia hemisphaericaexon
TCONS_00056406-exon-scaffold_276-1575043694:30255..30608TCONS_00056406-exon-scaffold_276-1575043694:30255..30608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:29160..30608 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	2.97369e-09	0	7.07133e-10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top