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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056411 ID=TCONS_00056411|Name=TCONS_00056411|organism=Clytia hemisphaerica|type=transcript|length=777bp
GGTTGGAGATAATGTCATCAATCTCACAAACTAGATTGGAGAGACAGCAG
AAGATAGGAGGTAGAGATGACTAAATCATTATGGCATCAACAGCATTTTA
TAATGTCCAAAAGCTTACAGTATAACCCTTGGTACAAAGATGATGTATTT
GAGCGATGTTTCCAATGAGTCCAGACAACTCAAGTCCAAACCTTGGCAAA
CATTGCTTTAACATCCAGGATTTCCATTTTAAATGAACGCTGTAACGACG
TGTTCCAGCCGGGGGTCCATTTACGTTAGTGAAGTATGGCCGATGGCGAA
ATAGTGCTAATGGAATGCTGAATCCCTGGACAAGAATGCTTGCAAGTTGC
TATgggaaaaaaaggtaaaaaataatcagaaGTTGACAAAAATATGCTAA
CTGAGGgataaagtatatttttttgtcaaatttaaagaatttaaagattt
aATTGGAACTGAAACGAGgaagaagaaattaaaaaaaaaagttaataaac
GTGGTTCGAGATTTATTTCACAGTAAGTTTTTTAGGTTATATTATGGTCA
TTTTTGTATGGgttaaaatcattttctatGTAGAGCTTCtataattttat
caaacaaaatatAATCTAGTTCGTGAACCCTGAGGTTTTAAAGGTGACAC
TTCCATATACATTTCCATAACCTAGGGAGTCGATAAGTTTTTCTTGTGTA
TGTTATAAATGCTTTCAAACAACTGCCTTTGCTGACAGGCTCTCTTGACA
ATTTTCAGCCATATGCTAGTTATCCCT Run BLAST on NCBI transcript from alignment at scaffold_276:87916..89968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056411 ID=TCONS_00056411|Name=TCONS_00056411|organism=Clytia hemisphaerica|type=transcript|length=2053bp|location=Sequence derived from alignment at scaffold_276:87916..89968+ (Clytia hemisphaerica)
GGTTGGAGATAATGTCATCAATCTCACAAACTAGATTGGAGAGACAGCAG
AAGATAGGAGGTAGAGATGACTAAATCATTATGGCATCAACAGCATTTTA
TAATGTCCAAAAGCTTACAGTATAACCCTTGGTACAAAGATGATGTATTT
GAGCGATGTTTCCAATGAGTCCAGACAACTCAAGTCCAAACCTTGGCAAA
CATTGCTTTAACATCCAGGATTTCCATTTTAAATGAACGCTGTAACGACG
TGTTCCAGCCGGGGGTCCATTTACGTTAGTGAAGTATGGCCGATGGCGAA
ATAGTGAGTATTCTAGACGAAGATCAAGTTGTTGTtgggaaatttttata
aaaatgttttatgaTTCTTATAGCGCATTTTGTACCTTGATTGAAACCTT
TGTTTATCTCTGTGTGACTAcgtgttttttctacaagtGTCTGCCCCATG
GTCAGGCTTGTGTATGCTTTCacaagttctcaaagcatccaggcatagct
tatgcttattatatgcttatgaatcatgcttatgattcaccccgagctaa
gtttttggtgaaatttcagaaatttttcagattttgggagcggTGAAATN
taagtttttggtgaaatttcagaaattttgtaaaaaaaatttcagatttt
gggagcggTAGCTAGCCGTGGATTGTCATTtgtacttgacctctaccaaa
cctttttaaacagataaaaaattcaacttgaaaaatatttcaggctgaca
tatgcttataagcgttatgcttattataaaaacatgtatttcATAAAGTT
ACAATggagtttctttaactcgaacaagttttccacgttttgattttgta
tcaaaaaatttttaagccttcgggtgttcttaaactttttgagttttaag
cctaaaaatgttcttaacatgttcttaatttcaccattttatgagtattt
tggtccattttcctaagaaattgggtcttttagagtccgcaaagccttaa
caTGCCTCTTaacttaacttgttcttaagattttggctaTCGATGCCTTA
TGttgttatatagtttgttttataaaaagaacttgtatggtcccttcagt
taacaatgccttaaacCTTACTATTTAACTTGAAATGTCCTTAACACTAT
CAAATTtgcgttccccgtgcgtgttcgagttatggagacgcCACTGTTTC
ATtcttttgactgattttacaattttgttcctataaaaaaagtttaaatc
cCCCTTTAAAGTATCTTAAGAGAATTTCCTCATTTAAaatctttcacaaa
attttatgATATTTGTTTAATGTTTTGACTGTTTGTTAGCTCTATTGTTT
TAAGATACATTCATATCATCTCTTTAGCActttgattaaaaataaatatt
atgaAGGAACTTGTTACTCAGACCCTTTTGTTTATCATCTTCAAGTACAC
GTGAAAGGGTCTGGAAACTAAATTGTTAATTGTTGCGACTCTATAAATGT
TCTTAGAAACAAGTCTGTTTCAGTCTTGTTTGCTTTGTAGATATTTCTCT
TAGATGAATATCCACTTTGCTTTTGCTAGGTGCTAATGGAATGCTGAATC
CCTGGACAAGAATGCTTGCAAGTTGCTATgggaaaaaaaggtaaaaaata
atcagaaGTTGACAAAAATATGCTAACTGAGGgataaagtatattttttt
gtcaaatttaaagaatttaaagatttaATTGGAACTGAAACGAGgaagaa
gaaattaaaaaaaaaagttaataaacGTGGTTCGAGATTTATTTCACAGT
AAGTTTTTTAGGTTATATTATGGTCATTTTTGTATGGgttaaaatcattt
tctatGTAGAGCTTCtataattttatcaaacaaaatatAATCTAGTTCGT
GAACCCTGAGGTTTTAAAGGTGACACTTCCATATACATTTCCATAACCTA
GGGAGTCGATAAGTTTTTCTTGTGTATGTTATAAATGCTTTCAAACAACT
GCCTTTGCTGACAGGCTCTCTTGACAATTTTCAGCCATATGCTAGTTATC
CCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056411-exon-scaffold_276-1491911889:87916..88218 | TCONS_00056411-exon-scaffold_276-1491911889:87916..88218 | Clytia hemisphaerica | exon |
| TCONS_00056411-exon-scaffold_276-1510915933:87916..88218 | TCONS_00056411-exon-scaffold_276-1510915933:87916..88218 | Clytia hemisphaerica | exon |
| TCONS_00056411-exon-scaffold_276-1575043694:87916..88218 | TCONS_00056411-exon-scaffold_276-1575043694:87916..88218 | Clytia hemisphaerica | exon |
| TCONS_00056411-exon-scaffold_276-1491911889:89495..89968 | TCONS_00056411-exon-scaffold_276-1491911889:89495..89968 | Clytia hemisphaerica | exon |
| TCONS_00056411-exon-scaffold_276-1510915933:89495..89968 | TCONS_00056411-exon-scaffold_276-1510915933:89495..89968 | Clytia hemisphaerica | exon |
| TCONS_00056411-exon-scaffold_276-1575043694:89495..89968 | TCONS_00056411-exon-scaffold_276-1575043694:89495..89968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:87916..89968 + |
Blast
The following BLAST results are available for this feature:
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