TCONS_00056701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056701
Unique NameTCONS_00056701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056701 ID=TCONS_00056701|Name=TCONS_00056701|organism=Clytia hemisphaerica|type=transcript|length=330bp
CCAAAGTCATTTAGATACGGATGAAGATGTGAATGAAAACGGGGACGACA
ATTCCAACGAACGTCCTCGTCTTCGAAGAGGCGCTCAAATTAGACTTCCA
CTTCCCAGGAACAAAGTTTGTTTGAATTCCTTTAATTTCCGAGCTGGCCA
AGCTTGGAATAGACTACCGTTAGAATTCAAAACTATTGAATCTTTggctg
aatttaaaagaaaaattatcaaggccaaaatctattgttcatGCGAACTC
TGTTCTATATTCtagtatttttaaattttaaaatattatttactaTATAG
TAAATATTCGAATGTCATGTTGGATGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_281:121274..121603

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056701 ID=TCONS_00056701|Name=TCONS_00056701|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_281:121274..121603 (Clytia hemisphaerica)
ATTACATCCAACATGACATTCGAATATTTACTATAtagtaaataatattt
taaaatttaaaaatactaGAATATAGAACAGAGTTCGCatgaacaataga
ttttggccttgataatttttcttttaaattcagccAAAGATTCAATAGTT
TTGAATTCTAACGGTAGTCTATTCCAAGCTTGGCCAGCTCGGAAATTAAA
GGAATTCAAACAAACTTTGTTCCTGGGAAGTGGAAGTCTAATTTGAGCGC
CTCTTCGAAGACGAGGACGTTCGTTGGAATTGTCGTCCCCGTTTTCATTC
ACATCTTCATCCGTATCTAAATGACTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035718XLOC_035718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056701-exon-scaffold_281-1491911889:121274..121603TCONS_00056701-exon-scaffold_281-1491911889:121274..121603Clytia hemisphaericaexon
TCONS_00056701-exon-scaffold_281-1510915933:121274..121603TCONS_00056701-exon-scaffold_281-1510915933:121274..121603Clytia hemisphaericaexon
TCONS_00056701-exon-scaffold_281-1575043694:121274..121603TCONS_00056701-exon-scaffold_281-1575043694:121274..121603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:121274..121603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.756643	0.514817	3.69049	5.37594	3.39325	6.0198	1.39424	1.79505	0	1.73436	0.317122	0.594079	0.370391	0.0203828	0.101742	0.902384	1.898	0	0.471054	0.503377	0.342216	0.47005	0	0.348345	8.09514	4.55143	0.600939	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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