TCONS_00058803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058803
Unique NameTCONS_00058803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058803 ID=TCONS_00058803|Name=TCONS_00058803|organism=Clytia hemisphaerica|type=transcript|length=638bp
CCTACGGAAATGTGTTATTGTTCAAGTTTGACAGGTCACGTAAATGTAAT
ATTTTTACAGATTTCACGCTGTCCTCCAACATCTGTAAAAACTTTCAGTC
AGTTATCCTGGAAAAGCCAGTGGAAACATCCTGCGTAAAGTCAGCAGAAA
AGTCGCTCAGAAACTAGATTCTTACCCAAAACGACCTTTGTAATTATGTG
TAAAAAGTTCGGTTATACTGATATCTAAGCCTGCAGACCCTCCCAGAAAA
GTTGGTACTTTAAAGTATAAGAAAATTATTATGTGGGAGAGAGTGtcgcc
actgacctttataaacacTGGACAAAGCTATATCTCTATCTGCCATTTTT
ATCACAGTTTTTAGAAATGTGGTGCCCTAATGGAGTTAAGTAGTATATAC
TACCAAATATGGGTCAATTTATAATGCGAGGACATCacagttgaaaaata
ttttgactctCAAAAAAACTCCATTCAAAGATTTTATTCTGAAGTTTTTA
GTCATTCAACATGATATCCATGTAATGTTATGACTACTGCAGTAGTTATG
CGGTCAATAGTTTCAGCATAAACTTTCTGATATTTTGACGTTTCTTATCT
GGAAAAATCACTTcataaattaaattattttaatcaAG
Run BLAST on NCBI

transcript from alignment at scaffold_313:494955..495592

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058803 ID=TCONS_00058803|Name=TCONS_00058803|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_313:494955..495592 (Clytia hemisphaerica)
CTtgattaaaataatttaatttatgAAGTGATTTTTCCAGATAAGAAACG
TCAAAATATCAGAAAGTTTATGCTGAAACTATTGACCGCATAACTACTGC
AGTAGTCATAACATTACATGGATATCATGTTGAATGACTAAAAACTTCAG
AATAAAATCTTTGAATGGAGTTTTTTTGagagtcaaaatatttttcaact
gtGATGTCCTCGCATTATAAATTGACCCATATTTGGTAGTATATACTACT
TAACTCCATTAGGGCACCACATTTCTAAAAACTGTGATAAAAATGGCAGA
TAGAGATATAGCTTTGTCCAgtgtttataaaggtcagtggcgaCACTCTC
TCCCACATAATAATTTTCTTATACTTTAAAGTACCAACTTTTCTGGGAGG
GTCTGCAGGCTTAGATATCAGTATAACCGAACTTTTTACACATAATTACA
AAGGTCGTTTTGGGTAAGAATCTAGTTTCTGAGCGACTTTTCTGCTGACT
TTACGCAGGATGTTTCCACTGGCTTTTCCAGGATAACTGACTGAAAGTTT
TTACAGATGTTGGAGGACAGCGTGAAATCTGTAAAAATATTACATTTACG
TGACCTGTCAAACTTGAACAATAACACATTTCCGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037046XLOC_037046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058803-exon-scaffold_313-1491911889:494955..495592TCONS_00058803-exon-scaffold_313-1491911889:494955..495592Clytia hemisphaericaexon
TCONS_00058803-exon-scaffold_313-1510915933:494955..495592TCONS_00058803-exon-scaffold_313-1510915933:494955..495592Clytia hemisphaericaexon
TCONS_00058803-exon-scaffold_313-1575043694:494955..495592TCONS_00058803-exon-scaffold_313-1575043694:494955..495592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:494955..495592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330795	0.322577	0.0936357	0.0916079	0.557619	0.440638	0.318967	0.298613	0.348443	0.345282	0	0.826153	0.0550003	0.0571184	0.234795	0.0503943	0.0620816	0	0.0879106	0.183984	0	0.468007	0.0948207	0.258617	0.17758	0	0	0.12102	0	0.187037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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