TCONS_00058814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058814
Unique NameTCONS_00058814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058814 ID=TCONS_00058814|Name=TCONS_00058814|organism=Clytia hemisphaerica|type=transcript|length=1409bp
TCAGTTTGAGAGCAAAATATTAAATCTCACTCCAGTCCTGAGTTTAGTAG
TTTGCTATCAAACTGAGGTCAGCATACATGGTTTTTTTTTCTAACCTTCA
CTGGTGCTCTCTAAGAAGTGGAGTGCATATTGAAGATTCACCACACCTGa
aatgtcattttattgattcattttaggaaaaataaattatccGGTAAATT
GTAGAAATAAATGTAGTAATAAATAAATCATTCCTAAAAACTTGAAagaa
gtgaaaaagaaaatggcttAGTAAAAGAAAAGGAAATAATGGGAATTGAC
ACTTTAAAAGACACAAGGTATAAAAGGaaTGAGGACAGAGATAAGAAGAT
ACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGGAGTTATTTG
AGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGATTGACCAA
GTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAGAAACAACATCAA
CAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCTAAATCTG
aaaggtTTGAAATGAAtgctttcaatttcaacaattcttCAAGAAAATTA
AGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACTGACTCTTGCACT
GATAGTGATTGGCATTGTTATTATTGTAATCGtatcGATTGTGATGAAAA
ACAAGAAATAAGGCTTTTTGCGAAAACTTAGAAAATCTTTAAGTGTCATC
TTCAAGTGGTAATTTTGTCgtccattttttatattttcttttggaTTTGG
TGAAAATATTTATTAGAATGCTTGTTATTTAtatgaattattttatttac
tttttactcaATTTAAAATGGCTAATACCTACCTCACACACCCcttgatt
ttcaatttcatatttcattaataagaatttttgaaatcatatCTTAGTTT
ATAAATCTCTATATCTTAATGATTTTAATTTACAATGATTTATTATCATA
AACATATTGttttacattattttttcaagaaaaatgataaatgcATTTTC
ATTTTAGAACCATATCTTTATACCATAGAAAATAGACTATATTGAATGAA
TTGTTGAATCTCAGTTGCGGTACAATACATATAAAtaacgtccatctaat
gttTATAACGTTCATAAAACGCTAAATTAATGTTGGAAAAACGTTTGTGT
GGGAGCTTGAATTGTGTAACTTTTAGATACACATTTTAAAATTCATAtca
tgaaaatcaaatttcatcgaGAGTTAGTGTTTTAAGAAATTCATTTAGAT
TTTCtttaattgaatttttaactcatTTTAGATTATCTTTAAATCTTTAG
TCAAATCTAGGGATTTAAATTCCAGTTACGTCTGATGACCTTTATTGACT
TTGCctgac
Run BLAST on NCBI

protein sequence of TCONS_00058814-protein

>TCONS_00058814-protein ID=TCONS_00058814-protein|Name=TCONS_00058814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MGIDTLKDTRYKRNEDRDKKIPLLNNEDESDDDEELFERSKQAASLNSNS
KIDQVKHELDGAIGVMRNNINKVLDRGDRLEDLEAKSERFEMNAFNFNNS
SRKLSNRMWWQSVKSKLTLALIVIGIVIIVIVSIVMKNKK
Run BLAST on NCBI

transcript from alignment at scaffold_314:80379..83964+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058814 ID=TCONS_00058814|Name=TCONS_00058814|organism=Clytia hemisphaerica|type=transcript|length=3586bp|location=Sequence derived from alignment at scaffold_314:80379..83964+ (Clytia hemisphaerica)
TCAGTTTGAGAGCAAAATATTAAATCTCACTCCAGTCCTGAGTTTAGTAG
TTTGCTATCAAACTGAGGTCAGCATACATGGTTTTTTTTTCTAACCTTCA
CTGGTGCTCTCTAAGAAGTGGAGTGCATATTGAAGATTCACCACACCTGa
aatgtcattttattgattcattttaggaaaaataaattatccGGTAAATT
GTAGAAATAAATGTAGTAATAAATAAATCATTCCTAAAAACTTGAAagaa
gtgaaaaagaaaatggcttAGTAAAAGGTAAGAAgcaatttgccaaattt
ttacCACCAATAACCACTAATTTCATCTCTTGAAAACGTTGATGGGAGAA
GAATTTTTCAAGCCATAGCCAAGTATAATCCTTGTGATCTCAGCTTCAAT
GAAATAAAATGATAAGAAGTAATAAATTTGAAATACAGAATGAGACACAA
AACACATTCGACTGTTTTGGTTCACTTAAAATCATGATAAACTTCTGGAC
ACCTATTCAACTACATACGATATTGTTGTATCCCCCAGTATTATTTTTAA
GTGAATTTTAAGGTTctatttttaatcatttttcattaattctTGTTTGC
GTAGAAAAGGAAATAATGGGAATTGACACTTTAAAAGACACAAGGTATAA
AAGGGTAAGTTTCTCTCCAGAAATATCTTATTTTTTAGACAACatagaaa
taataaaattatattcatgaaaaatttcaagggtagcatttttaattgta
aagttgagaaaatgttttataTTAATTTTGGCACTGCACTTTTTATAGAC
TCTTCGTTGAATGTCTTCTGCTTTGCCTCTGCACATATTTGCTTTTTGGG
GGATTTTCCAATATCCAGATATGAACAGTTATGTTTTAGGTGGGTGAATC
TTTTTTGTGTGCCAAATAACACTAGTTTTGATCTGTGAAACTTGGCTACC
CCCATAAAATTTGCTCTCTTTTATGCTATTCAACAGGAAACTTGCCTTTT
GAAATTAGAAAACTTAGAtcgttttgttttttcttcagaaTGAGGACAGA
GATAAGAAGGTATGATAAAGATAACGAATATGATATTAAACAGTTTTGTA
ATTGAAATTATACTAAATAAATATTCcctttttcaattcttttttaagaa
tgcactttaaaaattaattatctGTTATCAGTTTTGGGATATTGCAGAGA
CCAACAATAGTGTCGAATTCCGCAATGAAGGTTGTTGAATTGTGCTTATA
TTTTAGAATTTCACTTCACAACTCCAAGACACACAATATACATAGCAATC
AATTATGACAATCCTTTATCATGCATAATAGTTTATgctttgattctttt
ttgtgttttttgacTCAATATTTTTTCAGACACTTGCTATTCACTTGCTA
TCAATAGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGG
AGTTGTAAGctctgtttttttcttcatgttattctgcaaaattttatcAC
TCTCAtcaacaaattttaaaaatctgcaaaatatcTGCTgcttaagattt
tttttaaagtatagaAATCATGTGAGTgtaggtagagagtctatcaccat
atttccctaacactcTACCTGGAAGAGCTTGGGATTCGAATACGATAAAC
TCTGTATACATATAGAAGTCATTTCAACAAATAGTTTCTATTTATCATGT
TAACATTCGCATGATCTACTGTATGTACATTCTTTTTAGATTTGAGCGCT
CCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGATTGACCAAGTCAAG
CATGAATTAGATGGAGCCATAGGTGTTATGAGAAACAACATCAACAAAGT
CCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCTAAATCTGGTATGT
TTCTTTACAGTGCTATCATTTCAAGGATCAAATTAAAGTTATGTCAGGTG
CTTCGATTTTTTCCCTGTTTCAATTTAACAAAGtgctaaaatcataaaaa
atgttttcaattttgatgattAAAATAGAATCATCATTCGACACTGATAT
ATTTAAATCatattcatcttcatttttagaaaggtTTGAAATGAAtgctt
tcaatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGCAA
AGTGTTAAGGTATATTTTTAATGATAGAACAAAAACGTTTAAGATTTTTA
TGAATgcttaaatcaattttaaatcttaaacTGTTTTGAATTCTctataa
tttcaaaacttttatattttcagtCAAAACTGACTCTTGCACTGATAGTG
ATTGGCATTGTTATTATTGTAATCGGTAAgtctttttatttaaccatatc
CTGAGTCAGCAGATTTACTATGTAGGTCATTATAATGAGataaataaata
tataataACAATACGATAGAAGAAGAGAAGAAGTTTCTCTGATGATGCCA
GATTGTGAAGCTAAACTAATAACAAACCATTAATGTGAACATATTCTTTC
TTCTTTGAATTTTCCATATCAATTTGAGCTGGTTGTGTTTTCATTTGTGA
TTTTGCTCTTATTGAAAAGGATTAACTTTTGCTTATCCTCGGCATTTCAT
GTCAGGCACAGACATAGCAAcagttgttttgtttttcttaattAATATAA
TACTGATGAAGCTCATTAAACGAGCAAGCTTCTTAAAATAGATAAGTCTG
AATGAACATAGCAGTAGAAAGTACAATCATACAAAAGTGTTTTTGTGGTA
GGGTCAACTTTGACCTAGATCATATTTTTAATCAAGTAAAAATATCAGTT
GTTTCAGAATGTTTGTGAGGTGACAAtcttattcttttctttttcttttt
ctttttcagtatcGATTGTGATGAAAAACAAGAAATAAGGCTTTTTGCGA
AAACTTAGAAAATCTTTAAGTGTCATCTTCAAGTGGTAATTTTGTCgtcc
attttttatattttcttttggaTTTGGTGAAAATATTTATTAGAATGCTT
GTTATTTAtatgaattattttatttactttttactcaATTTAAAATGGCT
AATACCTACCTCACACACCCcttgattttcaatttcatatttcattaata
agaatttttgaaatcatatCTTAGTTTATAAATCTCTATATCTTAATGAT
TTTAATTTACAATGATTTATTATCATAAACATATTGttttacattatttt
ttcaagaaaaatgataaatgcATTTTCATTTTAGAACCATATCTTTATAC
CATAGAAAATAGACTATATTGAATGAATTGTTGAATCTCAGTTGCGGTAC
AATACATATAAAtaacgtccatctaatgttTATAACGTTCATAAAACGCT
AAATTAATGTTGGAAAAACGTTTGTGTGGGAGCTTGAATTGTGTAACTTT
TAGATACACATTTTAAAATTCATAtcatgaaaatcaaatttcatcgaGAG
TTAGTGTTTTAAGAAATTCATTTAGATTTTCtttaattgaatttttaact
catTTTAGATTATCTTTAAATCTTTAGTCAAATCTAGGGATTTAAATTCC
AGTTACGTCTGATGACCTTTATTGACTTTGCctgac

Coding sequence (CDS) from alignment at scaffold_314:80379..83964+

>TCONS_00058814 ID=TCONS_00058814|Name=TCONS_00058814|organism=Clytia hemisphaerica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_314:80379..83964+ (Clytia hemisphaerica)
ATGGGAATTGACACTTTAAAAGACACAAGGTATAAAAGGaaTGAGGACAG
AGATAAGAAGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATG
AGGAGTTATTTGAGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGT
AAGATTGACCAAGTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAG
AAACAACATCAACAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAG
AAGCTAAATCTGaaaggtTTGAAATGAAtgctttcaatttcaacaattct
tCAAGAAAATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACT
GACTCTTGCACTGATAGTGATTGGCATTGTTATTATTGTAATCGtatcGA
TTGTGATGAAAAACAAGAAATAAATGGGAATTGACACTTTAAAAGACACA
AGGTATAAAAGGaaTGAGGACAGAGATAAGAAGATACCGCTTCTAAACAA
TGAGGATGAAAGTGACGATGATGAGGAGTTATTTGAGCGCTCCAAACAAG
CAGCTAGCCTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTA
GATGGAGCCATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAG
AGGCGACCGTTTAGAAGATCTAGAAGCTAAATCTGaaaggtTTGAAATGA
AtgctttcaatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGG
TGGCAAAGTGTTAAGtCAAAACTGACTCTTGCACTGATAGTGATTGGCAT
TGTTATTATTGTAATCGtatcGATTGTGATGAAAAACAAGAAATAAATGG
GAATTGACACTTTAAAAGACACAAGGTATAAAAGGaaTGAGGACAGAGAT
AAGAAGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGGA
GTTATTTGAGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGA
TTGACCAAGTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAGAAAC
AACATCAACAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGC
TAAATCTGaaaggtTTGAAATGAAtgctttcaatttcaacaattcttCAA
GAAAATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACTGACT
CTTGCACTGATAGTGATTGGCATTGTTATTATTGTAATCGtatcGATTGT
GATGAAAAACAAGAAATAAATGGGAATTGACACTTTAAAAGACACAAGGT
ATAAAAGGaaTGAGGACAGAGATAAGAAGATACCGCTTCTAAACAATGAG
GATGAAAGTGACGATGATGAGGAGTTATTTGAGCGCTCCAAACAAGCAGC
TAGCCTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATG
GAGCCATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGC
GACCGTTTAGAAGATCTAGAAGCTAAATCTGaaaggtTTGAAATGAAtgc
tttcaatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGC
AAAGTGTTAAGtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTT
ATTATTGTAATCGtatcGATTGTGATGAAAAACAAGAAATAAATGGGAAT
TGACACTTTAAAAGACACAAGGTATAAAAGGaaTGAGGACAGAGATAAGA
AGATACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGGAGTTA
TTTGAGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGATTGA
CCAAGTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAGAAACAACA
TCAACAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCTAAA
TCTGaaaggtTTGAAATGAAtgctttcaatttcaacaattcttCAAGAAA
ATTAAGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACTGACTCTTG
CACTGATAGTGATTGGCATTGTTATTATTGTAATCGtatcGATTGTGATG
AAAAACAAGAAATAAATGGGAATTGACACTTTAAAAGACACAAGGTATAA
AAGGaaTGAGGACAGAGATAAGAAGATACCGCTTCTAAACAATGAGGATG
AAAGTGACGATGATGAGGAGTTATTTGAGCGCTCCAAACAAGCAGCTAGC
CTCAATTCCAACAGTAAGATTGACCAAGTCAAGCATGAATTAGATGGAGC
CATAGGTGTTATGAGAAACAACATCAACAAAGTCCTAGATAGAGGCGACC
GTTTAGAAGATCTAGAAGCTAAATCTGaaaggtTTGAAATGAAtgctttc
aatttcaacaattcttCAAGAAAATTAAGCAATCGAATGTGGTGGCAAAG
TGTTAAGtCAAAACTGACTCTTGCACTGATAGTGATTGGCATTGTTATTA
TTGTAATCGtatcGATTGTGATGAAAAACAAGAAATAAATGGGAATTGAC
ACTTTAAAAGACACAAGGTATAAAAGGaaTGAGGACAGAGATAAGAAGAT
ACCGCTTCTAAACAATGAGGATGAAAGTGACGATGATGAGGAGTTATTTG
AGCGCTCCAAACAAGCAGCTAGCCTCAATTCCAACAGTAAGATTGACCAA
GTCAAGCATGAATTAGATGGAGCCATAGGTGTTATGAGAAACAACATCAA
CAAAGTCCTAGATAGAGGCGACCGTTTAGAAGATCTAGAAGCTAAATCTG
aaaggtTTGAAATGAAtgctttcaatttcaacaattcttCAAGAAAATTA
AGCAATCGAATGTGGTGGCAAAGTGTTAAGtCAAAACTGACTCTTGCACT
GATAGTGATTGGCATTGTTATTATTGTAATCGtatcGATTGTGATGAAAA
ACAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037056XLOC_037056Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058814-proteinTCONS_00058814-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058814-exon-scaffold_314-1491911889:80379..80655TCONS_00058814-exon-scaffold_314-1491911889:80379..80655Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:80379..80655TCONS_00058814-exon-scaffold_314-1510915933:80379..80655Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:80379..80655TCONS_00058814-exon-scaffold_314-1575043694:80379..80655Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:80983..81032TCONS_00058814-exon-scaffold_314-1491911889:80983..81032Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:80983..81032TCONS_00058814-exon-scaffold_314-1510915933:80983..81032Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:80983..81032TCONS_00058814-exon-scaffold_314-1575043694:80983..81032Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:81417..81437TCONS_00058814-exon-scaffold_314-1491911889:81417..81437Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:81417..81437TCONS_00058814-exon-scaffold_314-1510915933:81417..81437Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:81417..81437TCONS_00058814-exon-scaffold_314-1575043694:81417..81437Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:81786..81832TCONS_00058814-exon-scaffold_314-1491911889:81786..81832Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:81786..81832TCONS_00058814-exon-scaffold_314-1510915933:81786..81832Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:81786..81832TCONS_00058814-exon-scaffold_314-1575043694:81786..81832Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:82118..82272TCONS_00058814-exon-scaffold_314-1491911889:82118..82272Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:82118..82272TCONS_00058814-exon-scaffold_314-1510915933:82118..82272Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:82118..82272TCONS_00058814-exon-scaffold_314-1575043694:82118..82272Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:82458..82537TCONS_00058814-exon-scaffold_314-1491911889:82458..82537Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:82458..82537TCONS_00058814-exon-scaffold_314-1510915933:82458..82537Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:82458..82537TCONS_00058814-exon-scaffold_314-1575043694:82458..82537Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:82652..82703TCONS_00058814-exon-scaffold_314-1491911889:82652..82703Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:82652..82703TCONS_00058814-exon-scaffold_314-1510915933:82652..82703Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:82652..82703TCONS_00058814-exon-scaffold_314-1575043694:82652..82703Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1491911889:83238..83964TCONS_00058814-exon-scaffold_314-1491911889:83238..83964Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1510915933:83238..83964TCONS_00058814-exon-scaffold_314-1510915933:83238..83964Clytia hemisphaericaexon
TCONS_00058814-exon-scaffold_314-1575043694:83238..83964TCONS_00058814-exon-scaffold_314-1575043694:83238..83964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:80379..83964 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58102	2.23134	0.339463	0.457051	4.76692	5.34581	9.12943	13.69	3.88685	4.99464	2.08975	3.99737	2.10419	2.32276	5.09652	3.83828	2.54355	4.44386	4.60457	1.88056	3.2352	1.45912	2.32466	1.8247	4.45583	5.58182	1.46782	2.79399	2.53387	1.56812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR016444Synaptobrevin/VAMP
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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