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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059549 ID=TCONS_00059549|Name=TCONS_00059549|organism=Clytia hemisphaerica|type=transcript|length=1228bp
ACAACATTTGAGTAGGGTTATTTTCTCGTTGAGAGTGCAACCAGGGTTTC
TGAAATAAAAGCGCTTGCAATTTATCAAAGTTTACGATCTCATTTTGGga
agaactttttgaagaaagGAAGAATGTTTAGTTTTACGATGTTTTTGGTT
ATCTTTCTGGCGATAATACAGATAGCTTCATCCAATAACGCTATGAAGCA
GTTGGCAGAGAAATATGCACCGCTTATCCGAATGGCTAAAGGCGATCCAT
GGAGACCATCATCAGTTGAATTCTTCTTAAAACATACAAAACTAACTGGT
AACATCAATCAAGCACACGTCACAACATCAAACCTACCGAAGTGTCCACA
AAGAGGATGTTATTTAACCACCAAACAAAACATGAATAAAGATACGACAT
CAAACCTCCCAGTTTTCTACGGAGAGCCTTTAGACAAGGCTCCAATCTAC
GCGTTCCATGAAACCACGCCCACTGAAATCATCATTGATTATTACACGTT
TTATCCGTACAACCGTGGTAAAACCATTTGTATTGGTATAGCTGGGAGCG
GTAAATGTGAGAAAAGAGTCTGGGGTGTTTGTATATTTTACTCTCCAAAA
TGTGCTGGCTATGCTAAATCATTTGGTCACCACGTTGGGGACTGGGAAGG
AATCAAGATTGTGTTCCATGCTAACAGATCACCAAAATATATCCAGTTCA
GAGCTCACGGAACCAAATACACATTCAACTACCAAAATGGCAATTTCATA
CGAAACGGTGAATCAATACGTTTCCATGGTAATCACCCTATTGTTTACTC
TGCATGGGGATCGCATGGCGCTCGCATCACTGCAGGATCACATGTTTATC
AAACCATACCTGTGAACAACAAATTGACCGATGTAACAAGCGACGGCCCC
GCATGGCACACCTGGCGAAACGTGGTTCTAATCCAAAAGAAGAAAGTTGG
AGAATATACAGGGAACGAAAGTTGGGTCAATTTCCGTGGCAGATGGGGCA
ACAAGAAACGTTCCTGTGACTTCTGGGAAAGGATTTCCAACGAATGTGTC
CAAAATAGCGGACCAGGAGGGCCATACTAACTTTCAAGATGTATTACAAA
ATGTGATAGTTTATTTACGATTCCAACGACTTTGTACAatttaaggagac
attcgagttatgtaCGTTTTATTGCTGtatttcttcgttttcttctttaa
attttgaaataagactCCAAAAACAAAC Run BLAST on NCBI protein sequence of TCONS_00059549-protein >TCONS_00059549-protein ID=TCONS_00059549-protein|Name=TCONS_00059549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MFSFTMFLVIFLAIIQIASSNNAMKQLAEKYAPLIRMAKGDPWRPSSVEF
FLKHTKLTGNINQAHVTTSNLPKCPQRGCYLTTKQNMNKDTTSNLPVFYG
EPLDKAPIYAFHETTPTEIIIDYYTFYPYNRGKTICIGIAGSGKCEKRVW
GVCIFYSPKCAGYAKSFGHHVGDWEGIKIVFHANRSPKYIQFRAHGTKYT
FNYQNGNFIRNGESIRFHGNHPIVYSAWGSHGARITAGSHVYQTIPVNNK
LTDVTSDGPAWHTWRNVVLIQKKKVGEYTGNESWVNFRGRWGNKKRSCDF
WERISNECVQNSGPGGPY Run BLAST on NCBI transcript from alignment at scaffold_329:591124..592571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059549 ID=TCONS_00059549|Name=TCONS_00059549|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at scaffold_329:591124..592571+ (Clytia hemisphaerica)
ACAACATTTGAGTAGGGTTATTTTCTCGTTGAGAGTGCAACCAGGGTTTC
TGAAATAAAAGCGCTTGCAATTTATCAAAGTTTACGATCTCATTTTGGga
agaactttttgaagaaagGAAGAATGTTTAGTTTTACGATGTTTTTGGTT
ATCTTTCTGGCGATAATACAGATAGCTTCATCCAATAACGGTAAGAAAAG
ATTTCCCAAGGATTGGCTTATTTGCttgttttcagtggggacaaaaatgg
gaggttaattttccaccggggatattttgcccaatttttccagtgaaaAG
GGGTCTAAgtgggtctgcgagaagggagtgtatcagaagacattgcaata
gtGCACATCATGAACAGCAGTTTTATGTCTGTACTTACAAATGACTCACT
CTTTTCATAGCTATGAAGCAGTTGGCAGAGAAATATGCACCGCTTATCCG
AATGGCTAAAGGCGATCCATGGAGACCATCATCAGTTGAATTCTTCTTAA
AACATACAAAACTAACTGGTAACATCAATCAAGCACACGTCACAACATCA
AACCTACCGAAGTGTCCACAAAGAGGATGTTATTTAACCACCAAACAAAA
CATGAATAAAGATACGACATCAAACCTCCCAGTTTTCTACGGAGAGCCTT
TAGACAAGGCTCCAATCTACGCGTTCCATGAAACCACGCCCACTGAAATC
ATCATTGATTATTACACGTTTTATCCGTACAACCGTGGTAAAACCATTTG
TATTGGTATAGCTGGGAGCGGTAAATGTGAGAAAAGAGTCTGGGGTGTTT
GTATATTTTACTCTCCAAAATGTGCTGGCTATGCTAAATCATTTGGTCAC
CACGTTGGGGACTGGGAAGGAATCAAGATTGTGTTCCATGCTAACAGATC
ACCAAAATATATCCAGTTCAGAGCTCACGGAACCAAATACACATTCAACT
ACCAAAATGGCAATTTCATACGAAACGGTGAATCAATACGTTTCCATGGT
AATCACCCTATTGTTTACTCTGCATGGGGATCGCATGGCGCTCGCATCAC
TGCAGGATCACATGTTTATCAAACCATACCTGTGAACAACAAATTGACCG
ATGTAACAAGCGACGGCCCCGCATGGCACACCTGGCGAAACGTGGTTCTA
ATCCAAAAGAAGAAAGTTGGAGAATATACAGGGAACGAAAGTTGGGTCAA
TTTCCGTGGCAGATGGGGCAACAAGAAACGTTCCTGTGACTTCTGGGAAA
GGATTTCCAACGAATGTGTCCAAAATAGCGGACCAGGAGGGCCATACTAA
CTTTCAAGATGTATTACAAAATGTGATAGTTTATTTACGATTCCAACGAC
TTTGTACAatttaaggagacattcgagttatgtaCGTTTTATTGCTGtat
ttcttcgttttcttctttaaattttgaaataagactCCAAAAACAAAC Coding sequence (CDS) from alignment at scaffold_329:591124..592571+ >TCONS_00059549 ID=TCONS_00059549|Name=TCONS_00059549|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_329:591124..592571+ (Clytia hemisphaerica)
ATGTTTAGTTTTACGATGTTTTTGGTTATCTTTCTGGCGATAATACAGAT
AGCTTCATCCAATAACGCTATGAAGCAGTTGGCAGAGAAATATGCACCGC
TTATCCGAATGGCTAAAGGCGATCCATGGAGACCATCATCAGTTGAATTC
TTCTTAAAACATACAAAACTAACTGGTAACATCAATCAAGCACACGTCAC
AACATCAAACCTACCGAAGTGTCCACAAAGAGGATGTTATTTAACCACCA
AACAAAACATGAATAAAGATACGACATCAAACCTCCCAGTTTTCTACGGA
GAGCCTTTAGACAAGGCTCCAATCTACGCGTTCCATGAAACCACGCCCAC
TGAAATCATCATTGATTATTACACGTTTTATCCGTACAACCGTGGTAAAA
CCATTTGTATTGGTATAGCTGGGAGCGGTAAATGTGAGAAAAGAGTCTGG
GGTGTTTGTATATTTTACTCTCCAAAATGTGCTGGCTATGCTAAATCATT
TGGTCACCACGTTGGGGACTGGGAAGGAATCAAGATTGTGTTCCATGCTA
ACAGATCACCAAAATATATCCAGTTCAGAGCTCACGGAACCAAATACACA
TTCAACTACCAAAATGGCAATTTCATACGAAACGGTGAATCAATACGTTT
CCATGGTAATCACCCTATTGTTTACTCTGCATGGGGATCGCATGGCGCTC
GCATCACTGCAGGATCACATGTTTATCAAACCATACCTGTGAACAACAAA
TTGACCGATGTAACAAGCGACGGCCCCGCATGGCACACCTGGCGAAACGT
GGTTCTAATCCAAAAGAAGAAAGTTGGAGAATATACAGGGAACGAAAGTT
GGGTCAATTTCCGTGGCAGATGGGGCAACAAGAAACGTTCCTGTGACTTC
TGGGAAAGGATTTCCAACGAATGTGTCCAAAATAGCGGACCAGGAGGGCC
ATACTAAATGTTTAGTTTTACGATGTTTTTGGTTATCTTTCTGGCGATAA
TACAGATAGCTTCATCCAATAACGCTATGAAGCAGTTGGCAGAGAAATAT
GCACCGCTTATCCGAATGGCTAAAGGCGATCCATGGAGACCATCATCAGT
TGAATTCTTCTTAAAACATACAAAACTAACTGGTAACATCAATCAAGCAC
ACGTCACAACATCAAACCTACCGAAGTGTCCACAAAGAGGATGTTATTTA
ACCACCAAACAAAACATGAATAAAGATACGACATCAAACCTCCCAGTTTT
CTACGGAGAGCCTTTAGACAAGGCTCCAATCTACGCGTTCCATGAAACCA
CGCCCACTGAAATCATCATTGATTATTACACGTTTTATCCGTACAACCGT
GGTAAAACCATTTGTATTGGTATAGCTGGGAGCGGTAAATGTGAGAAAAG
AGTCTGGGGTGTTTGTATATTTTACTCTCCAAAATGTGCTGGCTATGCTA
AATCATTTGGTCACCACGTTGGGGACTGGGAAGGAATCAAGATTGTGTTC
CATGCTAACAGATCACCAAAATATATCCAGTTCAGAGCTCACGGAACCAA
ATACACATTCAACTACCAAAATGGCAATTTCATACGAAACGGTGAATCAA
TACGTTTCCATGGTAATCACCCTATTGTTTACTCTGCATGGGGATCGCAT
GGCGCTCGCATCACTGCAGGATCACATGTTTATCAAACCATACCTGTGAA
CAACAAATTGACCGATGTAACAAGCGACGGCCCCGCATGGCACACCTGGC
GAAACGTGGTTCTAATCCAAAAGAAGAAAGTTGGAGAATATACAGGGAAC
GAAAGTTGGGTCAATTTCCGTGGCAGATGGGGCAACAAGAAACGTTCCTG
TGACTTCTGGGAAAGGATTTCCAACGAATGTGTCCAAAATAGCGGACCAG
GAGGGCCATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059549-exon-scaffold_329-1491911889:591124..591313 | TCONS_00059549-exon-scaffold_329-1491911889:591124..591313 | Clytia hemisphaerica | exon |
| TCONS_00059549-exon-scaffold_329-1510915933:591124..591313 | TCONS_00059549-exon-scaffold_329-1510915933:591124..591313 | Clytia hemisphaerica | exon |
| TCONS_00059549-exon-scaffold_329-1575043694:591124..591313 | TCONS_00059549-exon-scaffold_329-1575043694:591124..591313 | Clytia hemisphaerica | exon |
| TCONS_00059549-exon-scaffold_329-1491911889:591534..592571 | TCONS_00059549-exon-scaffold_329-1491911889:591534..592571 | Clytia hemisphaerica | exon |
| TCONS_00059549-exon-scaffold_329-1510915933:591534..592571 | TCONS_00059549-exon-scaffold_329-1510915933:591534..592571 | Clytia hemisphaerica | exon |
| TCONS_00059549-exon-scaffold_329-1575043694:591534..592571 | TCONS_00059549-exon-scaffold_329-1575043694:591534..592571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:591124..592571 + |
Blast
The following BLAST results are available for this feature:
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