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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059633 ID=TCONS_00059633|Name=TCONS_00059633|organism=Clytia hemisphaerica|type=transcript|length=1960bp
aatcagtattAGTGAATAATTAAGCAATTTTctactttgcaatttttcta
cagagagccaaataaagattttttcgttTGTTCTTGTTCAATTGCCCCTA
AGGATAAGTTCCATAGATAAGTATGAGGTTATTGAGACACAATGTGACAA
CTTTGCgggaaaacaaaatttttaacattgtgCTAGGCTGCTATGAGTTC
CAAGAATGTATTATTATCTCTTAGTGATAAAAAAGCGATACcacattatt
ttgaaaaaagagggGCAATATTATGATATCCAAGAACCAATAATTAATTA
GTCCTCTTGTGCAGAAAAATCCGGTCTACAAAGTGAAAATAGGGATATTG
GTGTAAAAAATTGGTAATCAAAGATGTCTTTGGGTAAATTGTCCTCTTAG
ACATCAGTATAgctatctatatatttaagtaacATCAGGCCAGAAGGCCC
ATTCTCGctacataaaaataaaaaaggagcCGCTGCAGGGGGCAGAAAAA
TACCAGACAAGAAAGGGCCAATACTACTGTGTACTGTGTACCTCCTAAAA
CCTTGAAACCTCCCATCCTGGTCTGTTGTCTGTAAAGCATTATGTCAGTT
TTTAGGGTATTTGAATTAAATTTGATCTAAAAAACTTGCTTGCCTATGGT
CCACCGGTTTGATGCTTTTATGTTATTTTGTCAACATCTTTTATTCCATC
TTTGTTACTATACCAACTAGGGGAAGAATTCAAGAAAGCTTTTGAATATT
TGAGATTCTTCTACAAAAGATGTCTTTGATGTTACGCAGTAATGTTTTAA
TTAGGGCTATTGGACTTAGGAGCTATATGATTGCGTTTCCACAGAGACCA
TCCATTTCTGAACGATATTCTAATTTGGAGGCAATAAAGGCTGCACCAAT
TCCAACATCATCACCAATTCTGGCTATGCAACAACCACCcaataatattg
tatttttccaACAATATGATGATTTCCATAAAGACGAAATTATAAATAAA
CCTGATGGCTCAGTAATATTTGTGACAGACAAGCTAccagaaaaatacaa
aaaacctCTGTTAAGCGAtgaagaaattgaatatatCATGAGAGGTGGTC
CAGATATGTGATTTGATGGTGGTGTGgatttgttattattattattatta
tttttttttttcagtttaccATCTATGTTTATTCATCCTTGTCTCTATTT
GTTTATAATtgcatattatttaaaaactagattttataTTAAAAATGTGT
CCATCCATATAATGtattcttttgtcttttacAACCAGTGAAATCCCTGT
TATATTGTTTTCCATGATCttgctttgttcttttttaattgcATTTAGAT
GAATGTGGCTTGGAGTTAATACTTATTGCCTTCAACTGCTTTAAATTAGC
ATAAtaggatgaaatttttttgcataaaacttaaataaagcgataactaa
aaaaaaagaaaaaaaagtgagcCTGAAGATTTCTTCCATAGTTTTGATTA
TTATTTCAATTATAGGCCTTATGCTTTTATGTCCAGGGGACTTTTTgttc
taaattttaaaacaagGTATGTGATTTGCAAGGCTTATGCTTAAAATATC
AAACCATGTTTACCTTGAGTTAGTCTTCAGAAAAGGTCTTACTGAGGACA
ATAGGAGGAATattaaaagtgaattttcatttttaattgctTTATTATCC
CTTTGATAATGAGAATaacattttcaagttttgaacTTAAAAAAATAAGC
TGAAACTGATTTTAATGTGCATTATTTTGCTCTCAATCATATTATTGCTA
AGAATTCTGTTAAATTTATTTCTAATTTGGATGTGTGCagtacaaacttt
tttttttaaatcatataAAAGTGCTACTAAGTTAGTCAGGTCTATTTTGT
ACTGTAAGCATAATGAATAATAAAGACGCTAAGAATctttttattgattt
aatttaaaaa Run BLAST on NCBI protein sequence of TCONS_00059633-protein >TCONS_00059633-protein ID=TCONS_00059633-protein|Name=TCONS_00059633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MSLMLRSNVLIRAIGLRSYMIAFPQRPSISERYSNLEAIKAAPIPTSSPI
LAMQQPPNNIVFFQQYDDFHKDEIINKPDGSVIFVTDKLPEKYKKPLLSD
EEIEYIMRGGPDM Run BLAST on NCBI transcript from alignment at scaffold_329:578140..580099 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059633 ID=TCONS_00059633|Name=TCONS_00059633|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at scaffold_329:578140..580099 (Clytia hemisphaerica)
tttttaaattaaatcaataaaaagATTCTTAGCGTCTTTATTATTCATTA
TGCTTACAGTACAAAATAGACCTGACTAACTTAGTAGCACTTTtatatga
tttaaaaaaaaaagtttgtactGCACACATCCAAATTAGAAATAAATTTA
ACAGAATTCTTAGCAATAATATGATTGAGAGCAAAATAATGCACATTAAA
ATCAGTTTCAGCTTATTTTTTTAAgttcaaaacttgaaaatgttATTCTC
ATTATCAAAGGGATAATAAagcaattaaaaatgaaaattcacttttaatA
TTCCTCCTATTGTCCTCAGTAAGACCTTTTCTGAAGACTAACTCAAGGTA
AACATGGTTTGATATTTTAAGCATAAGCCTTGCAAATCACATACcttgtt
ttaaaatttagaacAAAAAGTCCCCTGGACATAAAAGCATAAGGCCTATA
ATTGAAATAATAATCAAAACTATGGAAGAAATCTTCAGgctcactttttt
ttctttttttttagttatcgctttatttaagttttatgcaaaaaaatttc
atcctaTTATGCTAATTTAAAGCAGTTGAAGGCAATAAGTATTAACTCCA
AGCCACATTCATCTAAATgcaattaaaaaagaacaaagcaaGATCATGGA
AAACAATATAACAGGGATTTCACTGGTTgtaaaagacaaaagaataCATT
ATATGGATGGACACATTTTTAAtataaaatctagtttttaaataatatgc
aATTATAAACAAATAGAGACAAGGATGAATAAACATAGATggtaaactga
aaaaaaaaaataataataataataataacaaatcCACACCACCATCAAAT
CACATATCTGGACCACCTCTCATGatatattcaatttcttcaTCGCTTAA
CAGaggttttttgtatttttctggTAGCTTGTCTGTCACAAATATTACTG
AGCCATCAGGTTTATTTATAATTTCGTCTTTATGGAAATCATCATATTGT
tggaaaaatacaatattattgGGTGGTTGTTGCATAGCCAGAATTGGTGA
TGATGTTGGAATTGGTGCAGCCTTTATTGCCTCCAAATTAGAATATCGTT
CAGAAATGGATGGTCTCTGTGGAAACGCAATCATATAGCTCCTAAGTCCA
ATAGCCCTAATTAAAACATTACTGCGTAACATCAAAGACATCTTTTGTAG
AAGAATCTCAAATATTCAAAAGCTTTCTTGAATTCTTCCCCTAGTTGGTA
TAGTAACAAAGATGGAATAAAAGATGTTGACAAAATAACATAAAAGCATC
AAACCGGTGGACCATAGGCAAGCAAGTTTTTTAGATCAAATTTAATTCAA
ATACCCTAAAAACTGACATAATGCTTTACAGACAACAGACCAGGATGGGA
GGTTTCAAGGTTTTAGGAGGTACACAGTACACAGTAGTATTGGCCCTTTC
TTGTCTGGTATTTTTCTGCCCCCTGCAGCGgctccttttttatttttatg
tagCGAGAATGGGCCTTCTGGCCTGATgttacttaaatatatagatagcT
ATACTGATGTCTAAGAGGACAATTTACCCAAAGACATCTTTGATTACCAA
TTTTTTACACCAATATCCCTATTTTCACTTTGTAGACCGGATTTTTCTGC
ACAAGAGGACTAATTAATTATTGGTTCTTGGATATCATAATATTGCccct
cttttttcaaaataatgtgGTATCGCTTTTTTATCACTAAGAGATAATAA
TACATTCTTGGAACTCATAGCAGCCTAGcacaatgttaaaaattttgttt
tcccGCAAAGTTGTCACATTGTGTCTCAATAACCTCATACTTATCTATGG
AACTTATCCTTAGGGGCAATTGAACAAGAACAaacgaaaaaatctttatt
tggctctctgtagaaaaattgcaaagtagAAAATTGCTTAATTATTCACT
aatactgatt Coding sequence (CDS) from alignment at scaffold_329:578140..580099 >TCONS_00059633 ID=TCONS_00059633|Name=TCONS_00059633|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_329:578140..580099 (Clytia hemisphaerica)
TCACATATCTGGACCACCTCTCATGatatattcaatttcttcaTCGCTTA
ACAGaggttttttgtatttttctggTAGCTTGTCTGTCACAAATATTACT
GAGCCATCAGGTTTATTTATAATTTCGTCTTTATGGAAATCATCATATTG
TtggaaaaatacaatattattgGGTGGTTGTTGCATAGCCAGAATTGGTG
ATGATGTTGGAATTGGTGCAGCCTTTATTGCCTCCAAATTAGAATATCGT
TCAGAAATGGATGGTCTCTGTGGAAACGCAATCATATAGCTCCTAAGTCC
AATAGCCCTAATTAAAACATTACTGCGTAACATCAAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059633-exon-scaffold_329-1491911889:578140..580099 | TCONS_00059633-exon-scaffold_329-1491911889:578140..580099 | Clytia hemisphaerica | exon |
| TCONS_00059633-exon-scaffold_329-1510915933:578140..580099 | TCONS_00059633-exon-scaffold_329-1510915933:578140..580099 | Clytia hemisphaerica | exon |
| TCONS_00059633-exon-scaffold_329-1575043694:578140..580099 | TCONS_00059633-exon-scaffold_329-1575043694:578140..580099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:578140..580099 . |
Blast
The following BLAST results are available for this feature:
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