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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059650 ID=TCONS_00059650|Name=TCONS_00059650|organism=Clytia hemisphaerica|type=transcript|length=1793bp
ATTTGATATGTCCTTAAAAATGTCGTAATGTGTACCAAATATGGCTGCAA
TCAATTATGTTTAGACCAATCATAAACGTGCAAtggtaaaagaaagaaaa
acatgaGAAAGCGTGATTATAAATCACAGTTTAAAAGAAACAGCCTTCTT
TTTTACTCTCTACTTAATCGTATCATCTCGTCTGAATCGAACAACGAAAC
AAGAATTTGTGTTTAGCTGCTGTTAATTTTATTGTGAAACTTCTTTCAAG
AAATATTCTACAAGTGATTGAACGCTGCTTTTAGGTAATCGTACAATTTA
TATACAAGATGAAGAATTTAGTCTACTTATCGTGTTTTATTTTGGCTCTT
GGATACACCATGGCACAATCAACAATAGCAGCACCAACACCAACGATGTC
AGTATCACCAGATGCTTCAACCTCAGCAGTTGACCCACAAATGCACACAA
GTGCAGCAGCATCTCCAGCAGCATCTCAATCAATGTCTCCAATGTCTGTA
TCTCCTTCACCATCGAAATCAATGCAGCCTTCAGCATCGATGTCTGCCAG
TGTTGGACCCACAATGACCACTGGTGCAACCACCACCACACCTTCTTCAT
CCAATTACATTACATTATCAAGTGCTCTATTCTTTGGTTCATTGGTAGCT
GCTATGACCAAATTCATGTTTGCCTAATTTCTGTGATGAGACATTTGTGG
GTaacctttctttttcttttgctggcagatttttttgaacatttcttaat
tttctggAATGGATAAAAATTTTCTGAAGCTGTTTGACTTGCGTCACGAA
tgaagaaaaatggaaaagataaaagattcGTATGATTGTGCTTACAGGCT
TATACGCGAAAATATTTGGGCAAAAATGATTCAAATGAACCCAAAATTAA
AGTTAAACTGTTTCAGACTCTGGATATGGGAAAAAGTCAAATAATTATAA
AAGCCGTTGACCGTTCAACATATTAAATTTGaatgttaatatttttgaac
tGTATTAGTGAAATATGTTATGTTTGATCAGTTAATAGTTGCtcctttat
tttctttgttgaaTATGCAAAtgtaaattagattttttttaaaaacgtgT
CTAAATTTCTCCAAACCCAGCTGGATCAAGAATTTAGTCTTTGATTAAAA
GTTTTGAAGCGAATATTCGTATTTTATGTAAAgatctttttcataatttt
cacatCTTTACGCTTAGTTTGTATTTATGTATCTActtagaaaatttaat
ttttgaaaaaaatatagtttaatttttttccgaCACTTCAGATTTCATTT
AAATGTTGCAGACGACGTACACGtttaagaacacgaggcttcgatggcca
aaatgttaagaacaagttaagaaaattttaaggctttgtggactcaaaaa
cactgTTTTCTTAGGAAGATGAGTAAAAAAAGTCGCAGtattgtgaaaat
aaaaacattttaagaacatatttAGGCTTGAAAgccaaaaagctaagaac
atcccaaggcttaataaattttggatgtttttatgaaaaaacgtgtcGTA
GTCTATAAGTATTCACAATGAATTGTGAAACGATTGATGTTTATCTAAGA
TAACAAGTAGGGCGGAATTCAATCGACAACTCTGTCTACTcgagtatttt
tttaaataacaattTCAGGATTTAGTGTCTTTTGTGAATAAAATCGGGGT
TAAACGGGTTCACAAATCTCATCTCAGGTCAAATTTAAAAGTACTATATT
AAAATAAGGCTAATCagatttttcgagtgatttttCTACACAA Run BLAST on NCBI protein sequence of TCONS_00059650-protein >TCONS_00059650-protein ID=TCONS_00059650-protein|Name=TCONS_00059650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MKNLVYLSCFILALGYTMAQSTIAAPTPTMSVSPDASTSAVDPQMHTSAA
ASPAASQSMSPMSVSPSPSKSMQPSASMSASVGPTMTTGATTTTPSSSNY
ITLSSALFFGSLVAAMTKFMFA Run BLAST on NCBI transcript from alignment at scaffold_329:743676..745468 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059650 ID=TCONS_00059650|Name=TCONS_00059650|organism=Clytia hemisphaerica|type=transcript|length=1793bp|location=Sequence derived from alignment at scaffold_329:743676..745468 (Clytia hemisphaerica)
TTGTGTAGaaaaatcactcgaaaaatctGATTAGCCTTATTTTAATATAG
TACTTTTAAATTTGACCTGAGATGAGATTTGTGAACCCGTTTAACCCCGA
TTTTATTCACAAAAGACACTAAATCCTGAaattgttatttaaaaaaatac
tcgAGTAGACAGAGTTGTCGATTGAATTCCGCCCTACTTGTTATCTTAGA
TAAACATCAATCGTTTCACAATTCATTGTGAATACTTATAGACTACgaca
cgttttttcataaaaacatccaaaatttattaagccttgggatgttctta
gctttttggcTTTCAAGCCTaaatatgttcttaaaatgtttttattttca
caataCTGCGACTTTTTTTACTCATCTTCCTAAGAAAAcagtgtttttga
gtccacaaagccttaaaattttcttaacttgttcttaacattttggccat
cgaagcctcgtgttcttaaaCGTGTACGTCGTCTGCAACATTTAAATGAA
ATCTGAAGTGtcggaaaaaaattaaactatatttttttcaaaaattaaat
tttctaagTAGATACATAAATACAAACTAAGCGTAAAGatgtgaaaatta
tgaaaaagatcTTTACATAAAATACGAATATTCGCTTCAAAACTTTTAAT
CAAAGACTAAATTCTTGATCCAGCTGGGTTTGGAGAAATTTAGAcacgtt
tttaaaaaaaatctaatttacaTTTGCATAttcaacaaagaaaataaagg
aGCAACTATTAACTGATCAAACATAACATATTTCACTAATACagttcaaa
aatattaacattCAAATTTAATATGTTGAACGGTCAACGGCTTTTATAAT
TATTTGACTTTTTCCCATATCCAGAGTCTGAAACAGTTTAACTTTAATTT
TGGGTTCATTTGAATCATTTTTGCCCAAATATTTTCGCGTATAAGCCTGT
AAGCACAATCATACgaatcttttatcttttccatttttcttcaTTCGTGA
CGCAAGTCAAACAGCTTCAGAAAATTTTTATCCATTccagaaaattaaga
aatgttcaaaaaaatctgccagcaaaagaaaaagaaaggttACCCACAAA
TGTCTCATCACAGAAATTAGGCAAACATGAATTTGGTCATAGCAGCTACC
AATGAACCAAAGAATAGAGCACTTGATAATGTAATGTAATTGGATGAAGA
AGGTGTGGTGGTGGTTGCACCAGTGGTCATTGTGGGTCCAACACTGGCAG
ACATCGATGCTGAAGGCTGCATTGATTTCGATGGTGAAGGAGATACAGAC
ATTGGAGACATTGATTGAGATGCTGCTGGAGATGCTGCTGCACTTGTGTG
CATTTGTGGGTCAACTGCTGAGGTTGAAGCATCTGGTGATACTGACATCG
TTGGTGTTGGTGCTGCTATTGTTGATTGTGCCATGGTGTATCCAAGAGCC
AAAATAAAACACGATAAGTAGACTAAATTCTTCATCTTGTATATAAATTG
TACGATTACCTAAAAGCAGCGTTCAATCACTTGTAGAATATTTCTTGAAA
GAAGTTTCACAATAAAATTAACAGCAGCTAAACACAAATTCTTGTTTCGT
TGTTCGATTCAGACGAGATGATACGATTAAGTAGAGAGTAAAAAAGAAGG
CTGTTTCTTTTAAACTGTGATTTATAATCACGCTTTCtcatgtttttctt
tcttttaccaTTGCACGTTTATGATTGGTCTAAACATAATTGATTGCAGC
CATATTTGGTACACATTACGACATTTTTAAGGACATATCAAAT Coding sequence (CDS) from alignment at scaffold_329:743676..745468 >TCONS_00059650 ID=TCONS_00059650|Name=TCONS_00059650|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_329:743676..745468 (Clytia hemisphaerica)
TTAGGCAAACATGAATTTGGTCATAGCAGCTACCAATGAACCAAAGAATA
GAGCACTTGATAATGTAATGTAATTGGATGAAGAAGGTGTGGTGGTGGTT
GCACCAGTGGTCATTGTGGGTCCAACACTGGCAGACATCGATGCTGAAGG
CTGCATTGATTTCGATGGTGAAGGAGATACAGACATTGGAGACATTGATT
GAGATGCTGCTGGAGATGCTGCTGCACTTGTGTGCATTTGTGGGTCAACT
GCTGAGGTTGAAGCATCTGGTGATACTGACATCGTTGGTGTTGGTGCTGC
TATTGTTGATTGTGCCATGGTGTATCCAAGAGCCAAAATAAAACACGATA
AGTAGACTAAATTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059650-exon-scaffold_329-1491911889:743676..745468 | TCONS_00059650-exon-scaffold_329-1491911889:743676..745468 | Clytia hemisphaerica | exon |
| TCONS_00059650-exon-scaffold_329-1510915933:743676..745468 | TCONS_00059650-exon-scaffold_329-1510915933:743676..745468 | Clytia hemisphaerica | exon |
| TCONS_00059650-exon-scaffold_329-1575043694:743676..745468 | TCONS_00059650-exon-scaffold_329-1575043694:743676..745468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:743676..745468 . |
Blast
The following BLAST results are available for this feature:
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