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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059681 ID=TCONS_00059681|Name=TCONS_00059681|organism=Clytia hemisphaerica|type=transcript|length=1902bp
GGTTTACACATGAAAGCGTCGAATAGTGTTTCATATTCAGTtcacttttt
tattatttaacactttttggattttcagcAAAGCATATGATGTCAAACAC
TTCAGCGTTGGCTTTGAACCATGACGGTGACCAACAGAAAGCTATCCTGT
ATAGCTTAGGTGCTTTACTCTTAATCTTCATCAACTCAATGACCATCGTA
TCATATCTTATGCGAAAGAAAGGAAAGCGTGGTATCCCTGATATCTTTAT
GTTGAGCCTGGCCATCTCGTCTATCTTAACTATGGTGACTGTTATCTTGA
TTCTAGCCTATGTTCGTGCGACTGGGAATGAGAATTTCACAGGCTTGATG
TCACTGTGTTATACCCAAGTGTTCTTTGGAACGATGTTACGTTTGCTTGA
TGTTTCCATAACAACAGCTATTACAATAGATCGTTTTCTTGCTTTATACA
AACCATTGGTATATCGAGTCAAAATCAATCTCAAACATGGGAAAATGATC
TGTATTATTTTGTGGCTCTCTTCTGGAATCATATCCACGCTACCGTTTTT
AGGTTTTGGTCGCATTAGTATGCACATGCAGAGCTTTTGCACCGCAGATT
GGACTTCAGAGATCGCTTACATTGTTCTCACCATGGCTTATGCTCAATTT
GCGATTGTTTTGTTATGCTATGTAGGTATCTTTAGAGCAATATCAGGCCT
TGTTAGTCGTCAGAAGACAATGAAAAAATCACAATCGTTAAGCTACGTTT
CTCCTCTCCCAACACGGAAGAAAGGTATCACCAATGAGATAACAATGAGC
TCAACAATACTTGAATCTATCAGTGAAAAACTAGTATCAGGACTAGATAA
TTTTGCTTTTGAGGGACAAAGTCCATCTACCAGTAGTTTGGATTTTATAG
TCACCCCAAATAACGAGGaatcaaaactggtgaaagattTTGCTGACATA
CCTGAAAATTTCCCAGATACGAAAAGGCGAGTTTCTTTTGAAGAAACAAG
TCTTGATATAAAAGAGGGAGAAAATCCAACAAATAAGGGAAGATCATTTA
CAAGTGAAACTACACACGATCGACCAGTATCTAAAAGTGATTACTCAAAA
CCACCTTTCAAGGAgaacattaaaaagaaaaataatcgaGTCTCATGGCT
CAATACTGCTGAAAGCGAGAGCTGCGATAGCCGTGGAAATGACTCGATAA
CCCAAGCAGCAGATAAACCAAAGTTAGCCAAAACCCATAGTAGTCCTTTA
CCTCATCGAGACAAACCAGACCAACCTTCCTTCACTCGGGCCATATCCGA
TTACACAATCAGTCAAAAAGCCAAAAAACGTTTCAGCTCATTTAATATAC
TTCGTCATCTCAGCAAACGAAACAGAAATCGGACGTCCAATGCTTCATTG
AAAGATTTTCGGACAGAAAGCCAACGTTTCGCGAAAATTATGGGCGTGGT
TGTGTGTTTGTTTTATATCTCTTGGTTACCGCTAGCTATTTCAATCAACA
TTGTATTGGTTAGTGGATTGGAATATTTCATCAAGAACTATTACAATATT
TTGTGGCTCTCATACAACCTGAGTTTGACAAGTTCCATAGCAATCCCTAT
TGCTTATGCAGTGATGTGTAAACCTTATCGTGCCTCATACAAAGCTTTAT
ggaaattcgtcaaaaatagATTTGTGTGGAAAGGCGAAATAAAACTGGCT
TAGAAATAATCATCAACACTTTTACGCTTTTACGTTGATTTGGGTAGCCA
TGTTGCTACTACTTGTATTTTCTATTATTTCCTACTCTAAACCATCTTTC
TAACGATATATCACTTTCTAACTGACACTTTACTTCATACTGTATATATC
TTCGAAAAGATGTTTTCAGATCAGAAAACAAGTTAATTTTGTTATGGTCG
AT Run BLAST on NCBI protein sequence of TCONS_00059681-protein >TCONS_00059681-protein ID=TCONS_00059681-protein|Name=TCONS_00059681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
MMSNTSALALNHDGDQQKAILYSLGALLLIFINSMTIVSYLMRKKGKRGI
PDIFMLSLAISSILTMVTVILILAYVRATGNENFTGLMSLCYTQVFFGTM
LRLLDVSITTAITIDRFLALYKPLVYRVKINLKHGKMICIILWLSSGIIS
TLPFLGFGRISMHMQSFCTADWTSEIAYIVLTMAYAQFAIVLLCYVGIFR
AISGLVSRQKTMKKSQSLSYVSPLPTRKKGITNEITMSSTILESISEKLV
SGLDNFAFEGQSPSTSSLDFIVTPNNEESKLVKDFADIPENFPDTKRRVS
FEETSLDIKEGENPTNKGRSFTSETTHDRPVSKSDYSKPPFKENIKKKNN
RVSWLNTAESESCDSRGNDSITQAADKPKLAKTHSSPLPHRDKPDQPSFT
RAISDYTISQKAKKRFSSFNILRHLSKRNRNRTSNASLKDFRTESQRFAK
IMGVVVCLFYISWLPLAISINIVLVSGLEYFIKNYYNILWLSYNLSLTSS
IAIPIAYAVMCKPYRASYKALWKFVKNRFVWKGEIKLA Run BLAST on NCBI transcript from alignment at scaffold_330:230621..232711+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059681 ID=TCONS_00059681|Name=TCONS_00059681|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at scaffold_330:230621..232711+ (Clytia hemisphaerica)
GGTTTACACATGAAAGCGTCGAATAGTGTTTCATATTCAGTtcacttttt
tattatttaacactttttggattttcagcAAAGCATATGATGTCAAACAC
TTCAGCGTTGGCTTTGAACCATGACGGTGACCAACAGAAAGCTATCCTGT
ATAGCTTAGGTGCTTTACTCTTAATCTTCATCAACTCAATGACCATCGTA
TCATATCTTATGCGAAAGAAAGGAAAGCGTGGTATCCCTGATATCTTTAT
GTTGAGCCTGGCCATCTCGTCTATCTTAACTATGGTGACTGTTATCTTGA
TTCTAGCCTATGTTCGTGCGACTGGGAATGAGAATTTCACAGGCTTGATG
TCACTGTGTTATACCCAAGTGTTCTTTGGAACGATGTTACGTTTGCTTGA
TGTTTCCATAACAACAGCTATTACAATAGATCGTTTTCTTGCTTTATACA
AACCATTGGTATATCGAGTCAAAATCAATCTCAAACATGGGAAAATGATC
TGTATTATTTTGTGGCTCTCTTCTGGAATCATATCCACGCTACCGTTTTT
AGGTTTTGGTCGCATTAGTATGCACATGCAGAGCTTTTGCACCGCAGATT
GGACTTCAGAGATCGCTTACATTGTTCTCACCATGGCTTATGCTCAATTT
GCGATTGTTTTGTTATGCTATGTAGGTATCTTTAGAGCAATATCAGGCCT
TGTTAGTCGTCAGAAGACAATGAAAAAATCACAATCGTTAAGCTACGTTT
CTCCTCTCCCAACACGGAAGAAAGGTATCACCAATGAGATAACAATGAGC
TCAACAATACTTGAATCTATCAGTGAAAAACTAGTATCAGGACTAGATAA
TTTTGCTTTTGAGGGACAAAGTCCATCTACCAGTAGTTTGGATTTTATAG
TCACCCCAAATAACGAGGaatcaaaactggtgaaagattTTGCTGACATA
CCTGAAAATTTCCCAGATACGAAAAGGCGAGTTTCTTTTGAAGAAACAAG
TCTTGATATAAAAGAGGGAGAAAATCCAACAAATAAGGGAAGATCATTTA
CAAGTGAAACTACACACGATCGACCAGTATCTAAAAGTGATTACTCAAAA
CCACCTTTCAAGGAgaacattaaaaagaaaaataatcgaGTCTCATGGCT
CAATACTGCTGAAAGCGAGAGCTGCGATAGCCGTGGAAATGACTCGATAA
CCCAAGCAGCAGATAAACCAAAGTTAGCCAAAACCCATAGTAGTCCTTTA
CCTCATCGAGACAAACCAGACCAACCTTCCTTCACTCGGGCCATATCCGA
TTACACAATCAGTCAAAAAGCCAAAAAACGTTTCAGCTCATTTAATATAC
TTCGTCATCTCAGCAAACGAAACAGAAATCGGACGTCCAATGCTTCATTG
AAAGATTTTCGGACAGAAAGCCAACGTTTCGCGAAAATTATGGGCGTGGT
TGTGTGTTTGTTTTATATCTCTTGGTTACCGCTAGCTGTAAGTAGATTGT
GTGATTCGTTTTTGTAGTAATTTTCCATATTCTAAATAGGGATAAACTTC
CAGTTTCCGAACTGAAACTGAAAACCCCATTTATGACCGTCACTGAGCTG
TGACAGGGATGTAATTAAATGCAATTAGTTAAATGTTTGGTACTCTAaca
tatttctatatttttctcttttccagATTTCAATCAACATTGTATTGGTT
AGTGGATTGGAATATTTCATCAAGAACTATTACAATATTTTGTGGCTCTC
ATACAACCTGAGTTTGACAAGTTCCATAGCAATCCCTATTGCTTATGCAG
TGATGTGTAAACCTTATCGTGCCTCATACAAAGCTTTATggaaattcgtc
aaaaatagATTTGTGTGGAAAGGCGAAATAAAACTGGCTTAGAAATAATC
ATCAACACTTTTACGCTTTTACGTTGATTTGGGTAGCCATGTTGCTACTA
CTTGTATTTTCTATTATTTCCTACTCTAAACCATCTTTCTAACGATATAT
CACTTTCTAACTGACACTTTACTTCATACTGTATATATCTTCGAAAAGAT
GTTTTCAGATCAGAAAACAAGTTAATTTTGTTATGGTCGAT Coding sequence (CDS) from alignment at scaffold_330:230621..232711+ >TCONS_00059681 ID=TCONS_00059681|Name=TCONS_00059681|organism=Clytia hemisphaerica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_330:230621..232711+ (Clytia hemisphaerica)
ATGATGTCAAACACTTCAGCGTTGGCTTTGAACCATGACGGTGACCAACA
GAAAGCTATCCTGTATAGCTTAGGTGCTTTACTCTTAATCTTCATCAACT
CAATGACCATCGTATCATATCTTATGCGAAAGAAAGGAAAGCGTGGTATC
CCTGATATCTTTATGTTGAGCCTGGCCATCTCGTCTATCTTAACTATGGT
GACTGTTATCTTGATTCTAGCCTATGTTCGTGCGACTGGGAATGAGAATT
TCACAGGCTTGATGTCACTGTGTTATACCCAAGTGTTCTTTGGAACGATG
TTACGTTTGCTTGATGTTTCCATAACAACAGCTATTACAATAGATCGTTT
TCTTGCTTTATACAAACCATTGGTATATCGAGTCAAAATCAATCTCAAAC
ATGGGAAAATGATCTGTATTATTTTGTGGCTCTCTTCTGGAATCATATCC
ACGCTACCGTTTTTAGGTTTTGGTCGCATTAGTATGCACATGCAGAGCTT
TTGCACCGCAGATTGGACTTCAGAGATCGCTTACATTGTTCTCACCATGG
CTTATGCTCAATTTGCGATTGTTTTGTTATGCTATGTAGGTATCTTTAGA
GCAATATCAGGCCTTGTTAGTCGTCAGAAGACAATGAAAAAATCACAATC
GTTAAGCTACGTTTCTCCTCTCCCAACACGGAAGAAAGGTATCACCAATG
AGATAACAATGAGCTCAACAATACTTGAATCTATCAGTGAAAAACTAGTA
TCAGGACTAGATAATTTTGCTTTTGAGGGACAAAGTCCATCTACCAGTAG
TTTGGATTTTATAGTCACCCCAAATAACGAGGaatcaaaactggtgaaag
attTTGCTGACATACCTGAAAATTTCCCAGATACGAAAAGGCGAGTTTCT
TTTGAAGAAACAAGTCTTGATATAAAAGAGGGAGAAAATCCAACAAATAA
GGGAAGATCATTTACAAGTGAAACTACACACGATCGACCAGTATCTAAAA
GTGATTACTCAAAACCACCTTTCAAGGAgaacattaaaaagaaaaataat
cgaGTCTCATGGCTCAATACTGCTGAAAGCGAGAGCTGCGATAGCCGTGG
AAATGACTCGATAACCCAAGCAGCAGATAAACCAAAGTTAGCCAAAACCC
ATAGTAGTCCTTTACCTCATCGAGACAAACCAGACCAACCTTCCTTCACT
CGGGCCATATCCGATTACACAATCAGTCAAAAAGCCAAAAAACGTTTCAG
CTCATTTAATATACTTCGTCATCTCAGCAAACGAAACAGAAATCGGACGT
CCAATGCTTCATTGAAAGATTTTCGGACAGAAAGCCAACGTTTCGCGAAA
ATTATGGGCGTGGTTGTGTGTTTGTTTTATATCTCTTGGTTACCGCTAGC
TATTTCAATCAACATTGTATTGGTTAGTGGATTGGAATATTTCATCAAGA
ACTATTACAATATTTTGTGGCTCTCATACAACCTGAGTTTGACAAGTTCC
ATAGCAATCCCTATTGCTTATGCAGTGATGTGTAAACCTTATCGTGCCTC
ATACAAAGCTTTATggaaattcgtcaaaaatagATTTGTGTGGAAAGGCG
AAATAAAACTGGCTTAGATGATGTCAAACACTTCAGCGTTGGCTTTGAAC
CATGACGGTGACCAACAGAAAGCTATCCTGTATAGCTTAGGTGCTTTACT
CTTAATCTTCATCAACTCAATGACCATCGTATCATATCTTATGCGAAAGA
AAGGAAAGCGTGGTATCCCTGATATCTTTATGTTGAGCCTGGCCATCTCG
TCTATCTTAACTATGGTGACTGTTATCTTGATTCTAGCCTATGTTCGTGC
GACTGGGAATGAGAATTTCACAGGCTTGATGTCACTGTGTTATACCCAAG
TGTTCTTTGGAACGATGTTACGTTTGCTTGATGTTTCCATAACAACAGCT
ATTACAATAGATCGTTTTCTTGCTTTATACAAACCATTGGTATATCGAGT
CAAAATCAATCTCAAACATGGGAAAATGATCTGTATTATTTTGTGGCTCT
CTTCTGGAATCATATCCACGCTACCGTTTTTAGGTTTTGGTCGCATTAGT
ATGCACATGCAGAGCTTTTGCACCGCAGATTGGACTTCAGAGATCGCTTA
CATTGTTCTCACCATGGCTTATGCTCAATTTGCGATTGTTTTGTTATGCT
ATGTAGGTATCTTTAGAGCAATATCAGGCCTTGTTAGTCGTCAGAAGACA
ATGAAAAAATCACAATCGTTAAGCTACGTTTCTCCTCTCCCAACACGGAA
GAAAGGTATCACCAATGAGATAACAATGAGCTCAACAATACTTGAATCTA
TCAGTGAAAAACTAGTATCAGGACTAGATAATTTTGCTTTTGAGGGACAA
AGTCCATCTACCAGTAGTTTGGATTTTATAGTCACCCCAAATAACGAGGa
atcaaaactggtgaaagattTTGCTGACATACCTGAAAATTTCCCAGATA
CGAAAAGGCGAGTTTCTTTTGAAGAAACAAGTCTTGATATAAAAGAGGGA
GAAAATCCAACAAATAAGGGAAGATCATTTACAAGTGAAACTACACACGA
TCGACCAGTATCTAAAAGTGATTACTCAAAACCACCTTTCAAGGAgaaca
ttaaaaagaaaaataatcgaGTCTCATGGCTCAATACTGCTGAAAGCGAG
AGCTGCGATAGCCGTGGAAATGACTCGATAACCCAAGCAGCAGATAAACC
AAAGTTAGCCAAAACCCATAGTAGTCCTTTACCTCATCGAGACAAACCAG
ACCAACCTTCCTTCACTCGGGCCATATCCGATTACACAATCAGTCAAAAA
GCCAAAAAACGTTTCAGCTCATTTAATATACTTCGTCATCTCAGCAAACG
AAACAGAAATCGGACGTCCAATGCTTCATTGAAAGATTTTCGGACAGAAA
GCCAACGTTTCGCGAAAATTATGGGCGTGGTTGTGTGTTTGTTTTATATC
TCTTGGTTACCGCTAGCTATTTCAATCAACATTGTATTGGTTAGTGGATT
GGAATATTTCATCAAGAACTATTACAATATTTTGTGGCTCTCATACAACC
TGAGTTTGACAAGTTCCATAGCAATCCCTATTGCTTATGCAGTGATGTGT
AAACCTTATCGTGCCTCATACAAAGCTTTATggaaattcgtcaaaaatag
ATTTGTGTGGAAAGGCGAAATAAAACTGGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059681-exon-scaffold_330-1491911889:230621..232107 | TCONS_00059681-exon-scaffold_330-1491911889:230621..232107 | Clytia hemisphaerica | exon |
| TCONS_00059681-exon-scaffold_330-1510915933:230621..232107 | TCONS_00059681-exon-scaffold_330-1510915933:230621..232107 | Clytia hemisphaerica | exon |
| TCONS_00059681-exon-scaffold_330-1575043694:230621..232107 | TCONS_00059681-exon-scaffold_330-1575043694:230621..232107 | Clytia hemisphaerica | exon |
| TCONS_00059681-exon-scaffold_330-1491911889:232297..232711 | TCONS_00059681-exon-scaffold_330-1491911889:232297..232711 | Clytia hemisphaerica | exon |
| TCONS_00059681-exon-scaffold_330-1510915933:232297..232711 | TCONS_00059681-exon-scaffold_330-1510915933:232297..232711 | Clytia hemisphaerica | exon |
| TCONS_00059681-exon-scaffold_330-1575043694:232297..232711 | TCONS_00059681-exon-scaffold_330-1575043694:232297..232711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:230621..232711 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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