TCONS_00059703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059703
Unique NameTCONS_00059703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059703 ID=TCONS_00059703|Name=TCONS_00059703|organism=Clytia hemisphaerica|type=transcript|length=839bp
TGTTAATTGAAATGCTTTAAATTTTGATCATAAGATAATAACATAAGTTT
GATCAATTATTTGTAATGATTTTATAGCTCCTGCTTGAAGATGTCAAATA
CAATAGAACTTAGGAAAAAACAATGACCGACTCTGTTATTGTTTATAAAC
ACTCAAGATGTGGCTCATCAGAAGATTCTGTAGAAGTTTCACGGCTCTTA
GCTACTGAGGCAATAAATGTTACATCCACAATTGATTGGAATGTTTGGAC
TTCAAACAGCTTTATCTCTGAACATAAAGAATGTGATTGTGATGTTTACA
AATATTCAAAAGCACCTCCTGTTATCAGTGTTGGCAATCCAACTACAAAT
CATTCAGTCCCAAAAGAAATTACCCAGAAGAAACATGAAAAGATATTTTG
GTGTATGTCCTCATCCAATGTTTGCAAACAAGACAATTCTTCACCCTCAT
TTCTAATCCCTACCACTCCATCAGATAATTCACGACACAAGACACGACTC
ACAATAAATGATTCGCAAGAGGTTTGGATTAACACATGGAAGAAACTCTG
TCATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATGCCTATTACAAGG
AAGGCAAGGAGATAATGATCTACCATCGCGGTCACCAACAAGCTCAAgTT
GGACAATGGATTTGGGATCACGTGACCTGTGATTATTCCAAACGAACTTC
TCCTGTACTCAAGTGATTTTCTTCAAAGATTGTAACGAGCCTCCCTTATT
GGTAAAGTCTTGGTAAAGTGGTACaagtcaatcatttttaatcGTTTACA
TTTTATCTCAAATTTGATATGCATGGTTTTAAGAGgaca
Run BLAST on NCBI

protein sequence of TCONS_00059703-protein

>TCONS_00059703-protein ID=TCONS_00059703-protein|Name=TCONS_00059703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MTDSVIVYKHSRCGSSEDSVEVSRLLATEAINVTSTIDWNVWTSNSFISE
HKECDCDVYKYSKAPPVISVGNPTTNHSVPKEITQKKHEKIFWCMSSSNV
CKQDNSSPSFLIPTTPSDNSRHKTRLTINDSQEVWINTWKKLCHSLQNEE
LNSCNAYYKEGKEIMIYHRGHQQAQVGQWIWDHVTCDYSKRTSPVLK
Run BLAST on NCBI

transcript from alignment at scaffold_330:426853..429281+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059703 ID=TCONS_00059703|Name=TCONS_00059703|organism=Clytia hemisphaerica|type=transcript|length=2429bp|location=Sequence derived from alignment at scaffold_330:426853..429281+ (Clytia hemisphaerica)
TGTTAATTGAAATGCTTTAAATTTTGATCATAAGATAATAACATAAGTTT
GATCAATTATTTGTAATGATTTTATAGCTCCTGCTTGAAGATGTCAAATA
CAATAGAACTTAGGAAAAAACAATGACCGACTCTGTTATTGTTTATAAAC
ACTCAAGATGTGGCTCATCAGAAGATTCTGTAGAAGTTTCACGGCTCTTA
GCTACTGAGGCAATAAATGTTACATCCACAATTGATTGGAATGTTTGGAC
TTCAAACAGCTTTATCTCTGAACATAAAGGTTTGTCAACGAAACATTTGA
CCATCCAAAATTCTATCTCATTGCTTAACAAATTAGTTATTTTGCGTTTA
TTAGCGAAGCACTTGTAAAGTACAATTTTTGACGATTTTAGTCTTACAGT
ATCACTTCGAATAAATGCCCCCAGCGCTTATTTCGTTTGGTTTATAGGAG
GGATGTTAATTGAGTTGGGTGCGTTTAAAAGAATGGGCGtttattaatta
atttataACTAAGGGCGCTTTAATAAAGTGAACGAAAACCTCGTTTTGGA
AAGAGTTTCTTACATTGGTCACAGTAACAGCTATTAACAGTTGTTGTTTC
TTACTTTTGGTTCCAAGAATGTGATTGTGATGTTTACAAATATTCAAAAG
CACCTCCTGTTATCAGTGTTGGCAATCCAACTACAAATCATTCAGTCCCA
AAAGAAATTACCCAGAAGAAACATGAAAAGGTATGTTTCTTTAGTATAAT
TTCAGTTTATTATATTAGTTTTATAGAAATTATCTTTCATATGATAATTT
TTTGTCTATAGTTTGTATAAATTAGTATTTAGTTATAACTATGTAACACC
AACATTAAATAAATCAGAGaatgaataaaaatatattcattgCCATTAAT
ACAGTGAGATCCTTCCTTTACATTTTGAAGAATCGAAATAAGTTcaattt
cttataaagattAGAAATCCTTTGTAAAGAAACACTGATGTAacatttta
ttatttcttttgGTCATAGATATTTTGGTGTATGTCCTCATCCAATGTTT
GCAAACAAGACAATTCTTCACCCTCATTTCTAATCCCTACCACTCCATCA
GATAATTCACGACACAAGACACGACTCACAATAAATGGTATTAGAAAATT
TACACTCATTTCACCATTATGACAGAAATTGGTGTTTTTAATGGAGAACG
GTGAATTCTCCAACAAACTCGTTGAGCTTTTTCGCGATTTCTATTGCTAT
CTGCTTTGAATCACACATCTTTAGTCTTTAATCAAAAACTTGATCGACAT
ATTTGTTTTCCCCTTGCTTTAGATTCGCAAGAGGTTTGGATTAACACATG
GAAGAAACTCTGTCATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATG
CCTATTACAAGGTATCTTTGAATCATATTTGCAAGcatcagaaaattatt
ttgcaaaaagtCAGTGTTGCAACTTTACCGTCTGTAGACGGAAATCCGTC
CAGCTGAGATACACTATTTCCGTCCTTTCAGCagtaatgatttttttcaa
aggaCTCACTAAACCAAAGATTTTTAACAAATTCCGTCCATAGTTACAAA
ACCTGGTTGCAACACtgaaaaagtgcatttttgaaaaatactcaaattct
ttttgaaattacagaaaaaaagaagaaaaaatcacaaaaaaaattcataa
cagCGAAAAGTCttcttcaaaatattaaaagtttGCAGAATTTTAGATAA
GCGCGTGAAACCTGAAAATGTCAATATTCTAAAgtgtaaattgattttta
aagtaATTTATATTTATACGTTACGCATAAGCTTTTGTTTTGCAGGAAGG
CAAGGAGATAATGATCTACCATCGCGGTCACCAACAAGCTCAAGTAAGGT
TGTCATTTTGTATAGCCACTGTCGATtgttttttaagagttttatcttaa
tattttaaggaaaaatatgAGCCTAATCAAGAAATCTGATAGACCAGGCA
GGATAAACATGTTTGTTATTTCAGAATGAAATTTTAATCGTACGTCAATT
AAACGAGCTTGGGCAGTTGTCTTCAAAATTCTAAATAGCAAACTGCATAA
AATTATATACTTGAGAAATTTTGATATGATTTGAGCAGTAAAATTCATTT
GGTATAGGTTTGCAGTCTTCAAAATTATGACCCATGCAGCTTGAATTAAA
AGTCAACAAATTGAAGAgtcgtttttgttgttttaaggTTGGACAATGGA
TTTGGGATCACGTGACCTGTGATTATTCCAAACGAACTTCTCCTGTACTC
AAGTGATTTTCTTCAAAGATTGTAACGAGCCTCCCTTATTGGTAAAGTCT
TGGTAAAGTGGTACaagtcaatcatttttaatcGTTTACATTTTATCTCA
AATTTGATATGCATGGTTTTAAGAGgaca

Coding sequence (CDS) from alignment at scaffold_330:426853..429281+

>TCONS_00059703 ID=TCONS_00059703|Name=TCONS_00059703|organism=Clytia hemisphaerica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_330:426853..429281+ (Clytia hemisphaerica)
ATGACCGACTCTGTTATTGTTTATAAACACTCAAGATGTGGCTCATCAGA
AGATTCTGTAGAAGTTTCACGGCTCTTAGCTACTGAGGCAATAAATGTTA
CATCCACAATTGATTGGAATGTTTGGACTTCAAACAGCTTTATCTCTGAA
CATAAAGAATGTGATTGTGATGTTTACAAATATTCAAAAGCACCTCCTGT
TATCAGTGTTGGCAATCCAACTACAAATCATTCAGTCCCAAAAGAAATTA
CCCAGAAGAAACATGAAAAGATATTTTGGTGTATGTCCTCATCCAATGTT
TGCAAACAAGACAATTCTTCACCCTCATTTCTAATCCCTACCACTCCATC
AGATAATTCACGACACAAGACACGACTCACAATAAATGATTCGCAAGAGG
TTTGGATTAACACATGGAAGAAACTCTGTCATTCACTGCAAAACGAAGAG
CTTAATAGTTGTAATGCCTATTACAAGGAAGGCAAGGAGATAATGATCTA
CCATCGCGGTCACCAACAAGCTCAAgTTGGACAATGGATTTGGGATCACG
TGACCTGTGATTATTCCAAACGAACTTCTCCTGTACTCAAGTGAATGACC
GACTCTGTTATTGTTTATAAACACTCAAGATGTGGCTCATCAGAAGATTC
TGTAGAAGTTTCACGGCTCTTAGCTACTGAGGCAATAAATGTTACATCCA
CAATTGATTGGAATGTTTGGACTTCAAACAGCTTTATCTCTGAACATAAA
GAATGTGATTGTGATGTTTACAAATATTCAAAAGCACCTCCTGTTATCAG
TGTTGGCAATCCAACTACAAATCATTCAGTCCCAAAAGAAATTACCCAGA
AGAAACATGAAAAGATATTTTGGTGTATGTCCTCATCCAATGTTTGCAAA
CAAGACAATTCTTCACCCTCATTTCTAATCCCTACCACTCCATCAGATAA
TTCACGACACAAGACACGACTCACAATAAATGATTCGCAAGAGGTTTGGA
TTAACACATGGAAGAAACTCTGTCATTCACTGCAAAACGAAGAGCTTAAT
AGTTGTAATGCCTATTACAAGGAAGGCAAGGAGATAATGATCTACCATCG
CGGTCACCAACAAGCTCAAgTTGGACAATGGATTTGGGATCACGTGACCT
GTGATTATTCCAAACGAACTTCTCCTGTACTCAAGTGAATGACCGACTCT
GTTATTGTTTATAAACACTCAAGATGTGGCTCATCAGAAGATTCTGTAGA
AGTTTCACGGCTCTTAGCTACTGAGGCAATAAATGTTACATCCACAATTG
ATTGGAATGTTTGGACTTCAAACAGCTTTATCTCTGAACATAAAGAATGT
GATTGTGATGTTTACAAATATTCAAAAGCACCTCCTGTTATCAGTGTTGG
CAATCCAACTACAAATCATTCAGTCCCAAAAGAAATTACCCAGAAGAAAC
ATGAAAAGATATTTTGGTGTATGTCCTCATCCAATGTTTGCAAACAAGAC
AATTCTTCACCCTCATTTCTAATCCCTACCACTCCATCAGATAATTCACG
ACACAAGACACGACTCACAATAAATGATTCGCAAGAGGTTTGGATTAACA
CATGGAAGAAACTCTGTCATTCACTGCAAAACGAAGAGCTTAATAGTTGT
AATGCCTATTACAAGGAAGGCAAGGAGATAATGATCTACCATCGCGGTCA
CCAACAAGCTCAAgTTGGACAATGGATTTGGGATCACGTGACCTGTGATT
ATTCCAAACGAACTTCTCCTGTACTCAAGTGAATGACCGACTCTGTTATT
GTTTATAAACACTCAAGATGTGGCTCATCAGAAGATTCTGTAGAAGTTTC
ACGGCTCTTAGCTACTGAGGCAATAAATGTTACATCCACAATTGATTGGA
ATGTTTGGACTTCAAACAGCTTTATCTCTGAACATAAAGAATGTGATTGT
GATGTTTACAAATATTCAAAAGCACCTCCTGTTATCAGTGTTGGCAATCC
AACTACAAATCATTCAGTCCCAAAAGAAATTACCCAGAAGAAACATGAAA
AGATATTTTGGTGTATGTCCTCATCCAATGTTTGCAAACAAGACAATTCT
TCACCCTCATTTCTAATCCCTACCACTCCATCAGATAATTCACGACACAA
GACACGACTCACAATAAATGATTCGCAAGAGGTTTGGATTAACACATGGA
AGAAACTCTGTCATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATGCC
TATTACAAGGAAGGCAAGGAGATAATGATCTACCATCGCGGTCACCAACA
AGCTCAAgTTGGACAATGGATTTGGGATCACGTGACCTGTGATTATTCCA
AACGAACTTCTCCTGTACTCAAGTGAATGACCGACTCTGTTATTGTTTAT
AAACACTCAAGATGTGGCTCATCAGAAGATTCTGTAGAAGTTTCACGGCT
CTTAGCTACTGAGGCAATAAATGTTACATCCACAATTGATTGGAATGTTT
GGACTTCAAACAGCTTTATCTCTGAACATAAAGAATGTGATTGTGATGTT
TACAAATATTCAAAAGCACCTCCTGTTATCAGTGTTGGCAATCCAACTAC
AAATCATTCAGTCCCAAAAGAAATTACCCAGAAGAAACATGAAAAGATAT
TTTGGTGTATGTCCTCATCCAATGTTTGCAAACAAGACAATTCTTCACCC
TCATTTCTAATCCCTACCACTCCATCAGATAATTCACGACACAAGACACG
ACTCACAATAAATGATTCGCAAGAGGTTTGGATTAACACATGGAAGAAAC
TCTGTCATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATGCCTATTAC
AAGGAAGGCAAGGAGATAATGATCTACCATCGCGGTCACCAACAAGCTCA
AgTTGGACAATGGATTTGGGATCACGTGACCTGTGATTATTCCAAACGAA
CTTCTCCTGTACTCAAGTGAATGACCGACTCTGTTATTGTTTATAAACAC
TCAAGATGTGGCTCATCAGAAGATTCTGTAGAAGTTTCACGGCTCTTAGC
TACTGAGGCAATAAATGTTACATCCACAATTGATTGGAATGTTTGGACTT
CAAACAGCTTTATCTCTGAACATAAAGAATGTGATTGTGATGTTTACAAA
TATTCAAAAGCACCTCCTGTTATCAGTGTTGGCAATCCAACTACAAATCA
TTCAGTCCCAAAAGAAATTACCCAGAAGAAACATGAAAAGATATTTTGGT
GTATGTCCTCATCCAATGTTTGCAAACAAGACAATTCTTCACCCTCATTT
CTAATCCCTACCACTCCATCAGATAATTCACGACACAAGACACGACTCAC
AATAAATGATTCGCAAGAGGTTTGGATTAACACATGGAAGAAACTCTGTC
ATTCACTGCAAAACGAAGAGCTTAATAGTTGTAATGCCTATTACAAGGAA
GGCAAGGAGATAATGATCTACCATCGCGGTCACCAACAAGCTCAAgTTGG
ACAATGGATTTGGGATCACGTGACCTGTGATTATTCCAAACGAACTTCTC
CTGTACTCAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037559XLOC_037559Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059703-proteinTCONS_00059703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059703-exon-scaffold_330-1491911889:426853..427131TCONS_00059703-exon-scaffold_330-1491911889:426853..427131Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:426853..427131TCONS_00059703-exon-scaffold_330-1510915933:426853..427131Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:426853..427131TCONS_00059703-exon-scaffold_330-1575043694:426853..427131Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1491911889:427470..427582TCONS_00059703-exon-scaffold_330-1491911889:427470..427582Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:427470..427582TCONS_00059703-exon-scaffold_330-1510915933:427470..427582Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:427470..427582TCONS_00059703-exon-scaffold_330-1575043694:427470..427582Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1491911889:427872..427989TCONS_00059703-exon-scaffold_330-1491911889:427872..427989Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:427872..427989TCONS_00059703-exon-scaffold_330-1510915933:427872..427989Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:427872..427989TCONS_00059703-exon-scaffold_330-1575043694:427872..427989Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1491911889:428175..428263TCONS_00059703-exon-scaffold_330-1491911889:428175..428263Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:428175..428263TCONS_00059703-exon-scaffold_330-1510915933:428175..428263Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:428175..428263TCONS_00059703-exon-scaffold_330-1575043694:428175..428263Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1491911889:428698..428745TCONS_00059703-exon-scaffold_330-1491911889:428698..428745Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:428698..428745TCONS_00059703-exon-scaffold_330-1510915933:428698..428745Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:428698..428745TCONS_00059703-exon-scaffold_330-1575043694:428698..428745Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1491911889:429090..429281TCONS_00059703-exon-scaffold_330-1491911889:429090..429281Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1510915933:429090..429281TCONS_00059703-exon-scaffold_330-1510915933:429090..429281Clytia hemisphaericaexon
TCONS_00059703-exon-scaffold_330-1575043694:429090..429281TCONS_00059703-exon-scaffold_330-1575043694:429090..429281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:426853..429281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.57145	8.67614	8.0014	7.73043	34.5957	26.5781	8.02135	6.80162	6.42954	5.99202	3.45222	3.66779	3.2088	4.90452	4.22455	3.55287	4.58247	5.58373	3.50913	5.75865	4.08027	2.80323	6.25268	7.50815	13.9911	12.631	3.54258	2.70554	5.79796	4.24005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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