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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059718 ID=TCONS_00059718|Name=TCONS_00059718|organism=Clytia hemisphaerica|type=transcript|length=2170bpRun BLAST on NCBI protein sequence of TCONS_00059718-protein >TCONS_00059718-protein ID=TCONS_00059718-protein|Name=TCONS_00059718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp MLVLFETPAGYAVFKLLNEKKLAEVDNLYKDFETGDKASQVVKLKHFKKFRun BLAST on NCBI transcript from alignment at scaffold_330:46866..56739- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059718 ID=TCONS_00059718|Name=TCONS_00059718|organism=Clytia hemisphaerica|type=transcript|length=9874bp|location=Sequence derived from alignment at scaffold_330:46866..56739- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:46866..56739- >TCONS_00059718 ID=TCONS_00059718|Name=TCONS_00059718|organism=Clytia hemisphaerica|type=CDS|length=22932bp|location=Sequence derived from alignment at scaffold_330:46866..56739- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059718 vs. Swiss-Prot (Human)
Match: NOP58 (Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1) HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0 Identity = 313/460 (68.04%), Postives = 377/460 (81.96%), Query Frame = 2
Query: 272 MLVLFETPAGYAVFKLLNEKKLAEVDNLYKDFETGDKASQVVKLKHFKKFEDXXXXXXXXXXSVEGXXXXXXXXXXXXVASKEVTEEMAVADAKIGNIIKEKFDISCVCSSAIHELMRGIRSQMNSLITGLSEKETTAMSLGLAHSLSRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPEMGKIVTDNLAYAKTVKLIGFKTNTADSDLSSILPXXXXXXXXXXXXISMGTDISEEDIENVTYLCEQIIQIAEYRMSLYDYLKNRMQAIAPNLTVMVGELVGARLIAHAGSLLNLAKQPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLVGQTSAKTKGKISRMLAAKTALAIRYDALGEEIDTEMGIQNRAKLETRIRFLEEGGMTKISGTGNGKVHNAKKHSIKSEDNIPVYDNGMDSTL---GKKRKVKEESDSDAEDT 1642
MLVLFET GYA+FK+LNEKKL EVD+L+K+FET +KA+++VKLKHF+KF+DT EALAA TA +EGK++K LKK++K KE E +AVADAK+G +IKEK ++SC+ S ++ELMRGIRSQM+ LI G+ +E AM LGLAHSLSRY+LKFS DKVDTMIVQAISLLDDLDKELNNY+MRCREWYGWHFPE+GKI++DNL Y K ++ +G + N A + LS +LPEEVE EVKAAAEISMGT++SEEDI N+ +LC Q+I+I+EYR LY+YL+NRM AIAPN+TVMVGELVGARLIAHAGSLLNLAK ASTVQILGAEKALFRALK++ DTPKYGLIYHASLVGQTS K KGKISRMLAAKT LAIRYDA GE+ + MG++NRAKLE R+R LE+ G+ KISGTG + +K+ KSE + YD DSTL KKRK+ E+ D + E T
Sbjct: 1 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLK-KIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKA-LAKTEKYEHKSE--VKTYDPSGDSTLPTCSKKRKI-EQVDKEDEIT 455 The following BLAST results are available for this feature:
BLAST of TCONS_00059718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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