TCONS_00059721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059721
Unique NameTCONS_00059721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059721 ID=TCONS_00059721|Name=TCONS_00059721|organism=Clytia hemisphaerica|type=transcript|length=1210bp
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCgccatttattttttatataaa
ttcgcatcaatgttttgaaaatatttcagttaaGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTaatattttgctgttaaaaGATGA
TATTCTTTAAATAACTTTTGGTGCTACCGTGACACGAAGACATCGCATCA
ACGCCACCAACAACCGTGCCTTTCAACAGCCGAGCGATACTGAATCATTC
ACAGACGAACAAGTCGATGATTTCCGCGAAGCCTTTTCACTATTCGATAA
AGACGGAGATGGCACCATCACGACTGGAGAATTAGGGATCGTTATGCGGA
GCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGACATGATTAATGAA
GTCGATATTGATGGGAATGGGACGATCGATTTTTTGGAGTTTCTGGGAAT
GATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTAAAGAAG
CGTTCCGTGTCTTCGATAAAGATGGTAATGGTTACATCAGTTCAGTGGAA
TTACGTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGT
AGAAGAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATT
ATGAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAGAGTCTGGATGA
GAATGATTCTTGGAGAGcataatattatttttatacTTGTACATAAGAGA
ATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTGTTTAACTGAGG
GGTATCAATATTGATAATTTGGCTGCTTGAATGCTgctgaaagaaaaaga
agaacgtTCGAAATGAGTGAAAATCGAAACTAACTGAAAAAAGACATTTA
TAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGTCAATTATTCTA
AACAGAATATATTGGTTTTGAATTTTGTAACATTATTatcgaaaactttt
tgaattatgcttaaaatatttttaacttattTAGTGAAGATTAGTAAAAG
ATAAAAACCC
Run BLAST on NCBI

protein sequence of TCONS_00059721-protein

>TCONS_00059721-protein ID=TCONS_00059721-protein|Name=TCONS_00059721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MRSLGQSPTEAELQDMINEVDIDGNGTIDFLEFLGMMARKMRSTDAEEEI
KEAFRVFDKDGNGYISSVELRHIMTTLGEKLTNEEVEEMIKEADMDGDGT
INYEEFVKMIMQK
Run BLAST on NCBI

transcript from alignment at scaffold_330:87017..91080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059721 ID=TCONS_00059721|Name=TCONS_00059721|organism=Clytia hemisphaerica|type=transcript|length=4064bp|location=Sequence derived from alignment at scaffold_330:87017..91080- (Clytia hemisphaerica)
TTCAAAACGTGAGTGTTCAGTGTTTTTATGAGCTTTCAGACTTTAAAAAC
GCGCCTAGCCTTGATTAGACATCTTAAAATTGTTCACACTTTGGCTTTTA
ATGCGCGTATGAGCTCAGATTAAGTTCTACGTAATCCCCCTGATTTTACT
TTTATCATTCTTTCAAGTCATTTTATTTCGCCATTTATTTTTTATATAAA
TTCGCATCAATGTTTTGAAAATATTTCAGTTAAGTGAAAATCGTTGAAAG
TACGTAAGTTTTGTGTACTTGTGGTTTAATATTTTGCTGTTAAAAGATGG
TAAGCTTGCATTTTTTTCAAGAATCTAAAAATTTCAAACACTTAAACTTT
TTGAAAGTGTTTTTTTTCGAAAAATGTGTTTTTATTTATCTAGGTCTTGG
AATTTTTTGCTTTTTTGTCAATTTATTTTTCCTACTTTTGTTAGATATTC
TTTAAATAACTTTTGGTGCTACCGTGACACGAAGACATCGCATCAACGCC
ACCAACAACCGTGCCTTTCAACAGCCGAGCGATGTAAGCTTTCGACCAAG
TAAAACAGTTATTACCACGAAAGGAAAAATTAGATTTTCTCGGACCCGTT
AAAATAAGACGCTTGTAAAACTCTGGAATTTCATTTCTCCCGAGTGGGAA
GTCATTGAACGGATTTTTAAAACAGAGTCAGTATAGTAAAGGAGGGAATT
GAACAAAACATTAAAGCATTCTATAGGATGAATGATGAGAATATCAAGTC
CAACCATCTGTTATCATGGCTCTCGGCAGGCTATCAAAACATGACAAAAA
TATAGTTTAAAAACTTTAGTAGGTCTAAAAAGAAGTAGAGAAAAGGGGTC
GAGAAAGGTAGATTTTCCTCTAGTAGAGTGAGGACACAGTGTACATGCTT
GTGGTAGCTTTAGGGTAGTTTAGAGAGAGTGATGTTTAATTACCTGTGGG
CATCTTTGCGCTCTCTCGCATTGTCATCAGGAGATGATGGCGATTTGGAA
AGTAGTTCAGATTCCAATGAAAGTTATTTCTTCCCAACAAAATTCCGAAG
AGGAGTCTTTCGAAGTTTTAAAGAACACATGATACCAGAGGTACAGGATA
GTCTGAGAGATCACAGATTTTAACAAAACCGAAGGTAGCATAGAAGCTAT
AAGAGCACGAAACCGTTAAGGAATGCCAGGATAGTGGAAGTTGAAGAAAA
GCTGGTTTGAAAGTCATGTACATGATTTATGGTGGTCAAAGAAAACGACA
CACCTCTTTGATCAATATCTTGGCCGAACTAACGGCTTTCTTCAAGATCA
AAACAAAGGCTTTTTATTGGCCAAATATGTAGATGTGCTGTAGATGCTAG
AGAAAATAGTCGAACGAAGATGTCGAGTGTAGTTTTGGTTAAGGAAAGAA
TAGATTTTCGAAATAAGAAGGTTTCTTGAGGGAACATGTTTCTACAATCC
TCAACCTTTTTCGGAATGGTAATGAGGCTGTAATATTGGAAAAGAGCTTT
CTATATACCATTTTTTTTTAGACTGAATCATTCACAGACGAACAAGTCGA
TGGTAAGAACACCTTTACATCTATCTAATATTAGCCTCGACAAAAGTGGG
AAAGAATGTAATTTTCGAGAAGTTAGACTTTCTTCTCTTTTTCCATTTTT
ACCCTCAACCTCTTCATCCTTACAATTCTTACAGTTGTGCCTTAACCTCT
GTTTATCACAATCATAAAGCAATGTAAGACTAAAAAATGTGAGAACCAAG
ACATTTTCCAATTAATCTATATCATTGATTAAAGGAACAGTAGACAAAAG
CTCCTCGATCATTGCCTTCTAATCACCAGTAAGATCAAAATCCAAAGAAA
ACCATCATAGGTCGTATCTAAAACCACACGGACTATGTTTAAAGTCAGGA
TTTGAAGGCTTTCATACTTTGAGCTATAGGAGGAAAGTGAATGAAACTTT
TCGATGGAGGATGAGTAGAAACATAAATTTCACCTTCAATTGACAGATTT
CCGCGAAGCCTTTTCACTATTCGATAAAGACGGAGATGGCACCATCACGA
CTGGAGAATTAGGGATCGTTATGCGGAGCCTGGGCCAATCACCCACAGAA
GCAGAACTACAAGACATGATTAATGAAGTCGATATTGATGGTAGGTTGAT
TCTAAGCATCATTACGTAAAGCTTTGGTTTGAACCATTTTGGGACCATTT
TTCAAATTGAAAAGGATTTGTTATACAGTCTCATTCATGAATAAATTCAT
GATGTAATCTGAAAGCAACCAGTTGATGGTTGAATATCAATTAGACGTTT
TAGGGCCTGGTGAAATACAGTGAAAAAGACATTCTCACAAAAAGAAGAAA
GCAGAATTTTTTGAAGTGAATTTCAAAATCGAAAATTTCACTAACACCTC
CTATCACAATCCTTTATAGGGAATGGGACGATCGATTTTTTGGAGTTTCT
GGGAATGATGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTA
AAGAAGCGTTCCGTGTCTTCGATAAAGATGGTGAGTTGGATGGAAGCTTG
TAGAAAGTTTCCTTATGACTCGGTTGACTGATTGATCGTCTCCATAGACC
CTTTTTCAGAGACATACTAGGTTTTTCACAAAGTCTATTTTAATTGACTC
TGTTGTATTTTCAAGGTTTTCCAGGGACAATACACTAGACATAAAACCGA
CACAGACTTTCGTCTGGATCGCCAAAACTTCTTCTCCTCGTACGAAATAT
TTATTTGTTATTCCTAACAGGTAATGGTTACATCAGTTCAGTGGAATTAC
GTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGAA
GAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATGA
AGGTGAGATTTCATAATTGTTCCTAATCTGGAAAAACGTTCATACAATAT
CGTTTAAAGTCGTTCCAAAACAAAATAATCTATTGTGTTGGTTCATCTTT
TGGAGTGACATCATTTCTAACCAACACCTATTCGTCTCGGAGATAAATAG
AGCGCAAAGACAGAGATGGTTAATAGAAAGTAAGTAAGTCTGCGACCGCA
CTTACTTCGATAGCTATTCACCCGAAGGTAGGGGAAGGCGCCACCCTTTC
TCCCTGGATTGCTCCACTTACCCTTGATCCTTCACTTAGTAGCCGAGCAT
CAAGCAGAGAGGCATCAAGTACCATTTTGGAAATCTTTGGTATGACCCGG
CTGGGGGTGAACCCACAACCATGCTTTACTACTCAGACTACTGCACTACG
GTCACAAGAGATAGATATGGAATTGATGAACAAGTTATATCGGCAAGGCC
TGTTAATCTCTAAGACGACCAAAGAAAGAAATGTCTACATTTATTACATT
GAATATGCAAGATGTTAGAAGTACCAAACAATATCCAAGTATTGATAAAA
AGGGTTCTTACTAGACAGATTTTAATAATTCCGATATCACGTTTTAACAC
TCCGAGTATCTTTCTTTTTTTACTGGGAGAAGTATCTTGGGGGCGGCTCC
CCTTAAAATCATAAGGTTGACAAATGCTATGAACTTAAAATTTTGAAAAG
TGGCAGATATGGACAATTGAAGGTGATTCTGTTAATCTCTATGTGTTCAT
TCTCTTTAAGAATTCGTCAAGATGATAATGCAAAAATGAGAAGAGTCTGG
ATGAGAATGATTCTTGGAGAGCATAATATTATTTTTATACTTGTACATAA
GAGAATTGGTATCGCTCTACCGTTTCCATGGAAACAAATGTTGTTTAACT
GAGGGGTATCAATATTGATAATTTGGCTGCTTGAATGCTGCTGAAAGAAA
AAGAAGAACGTTCGAAATGAGTGAAAATCGAAACTAACTGAAAAAAGACA
TTTATAGGAAAAACTCAAATTCACTGTGATATTTGACATGAGTCAATTAT
TCTAAACAGAATATATTGGTTTTGAATTTTGTAACATTATTATCGAAAAC
TTTTTGAATTATGCTTAAAATATTTTTAACTTATTTAGTGAAGATTAGTA
AAAGATAAAAACCC

Coding sequence (CDS) from alignment at scaffold_330:87017..91080-

>TCONS_00059721 ID=TCONS_00059721|Name=TCONS_00059721|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_330:87017..91080- (Clytia hemisphaerica)
AATTCGTCAAGATGATAATGCAAAAATGAGTAATGGTTACATCAGTTCAG
TGGAATTACGTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAG
GAAGTAGAAGAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCAT
CAATTATGAAGGGAATGGGACGATCGATTTTTTGGAGTTTCTGGGAATGA
TGGCACGGAAGATGCGTTCAACAGATGCAGAAGAAGAAATTAAAGAAGCG
TTCCGTGTCTTCGATAAAGATGATGCGGAGCCTGGGCCAATCACCCACAG
AAGCAGAACTACAAGACATGATTAATGAAGTCGATATTGATGAATTCGTC
AAGATGATAATGCAAAAATGAGTAATGGTTACATCAGTTCAGTGGAATTA
CGTCATATTATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGA
AGAGATGATCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATG
AAGGGAATGGGACGATCGATTTTTTGGAGTTTCTGGGAATGATGGCACGG
AAGATGCGTTCAACAGATGCAGAAGAAGAAATTAAAGAAGCGTTCCGTGT
CTTCGATAAAGATGATGCGGAGCCTGGGCCAATCACCCACAGAAGCAGAA
CTACAAGACATGATTAATGAAGTCGATATTGATGAATTCGTCAAGATGAT
AATGCAAAAATGAGTAATGGTTACATCAGTTCAGTGGAATTACGTCATAT
TATGACGACATTGGGTGAGAAATTGACCAATGAGGAAGTAGAAGAGATGA
TCAAGGAAGCAGATATGGATGGTGATGGCACCATCAATTATGAAGGGAAT
GGGACGATCGATTTTTTGGAGTTTCTGGGAATGATGGCACGGAAGATGCG
TTCAACAGATGCAGAAGAAGAAATTAAAGAAGCGTTCCGTGTCTTCGATA
AAGATGATGCGGAGCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGA
CATGATTAATGAAGTCGATATTGATGAATTCGTCAAGATGATAATGCAAA
AATGAGTAATGGTTACATCAGTTCAGTGGAATTACGTCATATTATGACGA
CATTGGGTGAGAAATTGACCAATGAGGAAGTAGAAGAGATGATCAAGGAA
GCAGATATGGATGGTGATGGCACCATCAATTATGAAGGGAATGGGACGAT
CGATTTTTTGGAGTTTCTGGGAATGATGGCACGGAAGATGCGTTCAACAG
ATGCAGAAGAAGAAATTAAAGAAGCGTTCCGTGTCTTCGATAAAGATGAT
GCGGAGCCTGGGCCAATCACCCACAGAAGCAGAACTACAAGACATGATTA
ATGAAGTCGATATTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037566XLOC_037566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059721-exon-scaffold_330-1575043694:90782..91080TCONS_00059721-exon-scaffold_330-1575043694:90782..91080Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:90548..90636TCONS_00059721-exon-scaffold_330-1575043694:90548..90636Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:89529..89559TCONS_00059721-exon-scaffold_330-1575043694:89529..89559Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:88941..89084TCONS_00059721-exon-scaffold_330-1575043694:88941..89084Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:88551..88661TCONS_00059721-exon-scaffold_330-1575043694:88551..88661Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:88179..88310TCONS_00059721-exon-scaffold_330-1575043694:88179..88310Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1575043694:87017..87420TCONS_00059721-exon-scaffold_330-1575043694:87017..87420Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:90782..91080TCONS_00059721-exon-scaffold_330-1510915933:90782..91080Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:90548..90636TCONS_00059721-exon-scaffold_330-1510915933:90548..90636Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:89529..89559TCONS_00059721-exon-scaffold_330-1510915933:89529..89559Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:88941..89084TCONS_00059721-exon-scaffold_330-1510915933:88941..89084Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:88551..88661TCONS_00059721-exon-scaffold_330-1510915933:88551..88661Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:88179..88310TCONS_00059721-exon-scaffold_330-1510915933:88179..88310Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1510915933:87017..87420TCONS_00059721-exon-scaffold_330-1510915933:87017..87420Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:90782..91080TCONS_00059721-exon-scaffold_330-1491911889:90782..91080Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:90548..90636TCONS_00059721-exon-scaffold_330-1491911889:90548..90636Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:89529..89559TCONS_00059721-exon-scaffold_330-1491911889:89529..89559Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:88941..89084TCONS_00059721-exon-scaffold_330-1491911889:88941..89084Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:88551..88661TCONS_00059721-exon-scaffold_330-1491911889:88551..88661Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:88179..88310TCONS_00059721-exon-scaffold_330-1491911889:88179..88310Clytia hemisphaericaexon
TCONS_00059721-exon-scaffold_330-1491911889:87017..87420TCONS_00059721-exon-scaffold_330-1491911889:87017..87420Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059721-proteinTCONS_00059721-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:87017..91080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0345618	0	0	0	0	0	0	0.0597331	0	0	0	0.0942862	0	0	0.129585	18.977	25.5483	0	0.0394252	6.95267	4.00635	8.74036	8.37145	13.036	12.6177	0.0971969	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00059721 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.925e-77
Identity = 115/148 (77.70%), Postives = 133/148 (89.86%), Query Frame = 2 
Query:  389 TESFTDEQVDDFREAFSLFDKDGDGTITTGELGIVMRSLGQSPTEAELQDMINEVDIDGNGTIDFLEFLGMMARKMRSTDAEEEIKEAFRVFDKDGNGYISSVELRHIMTTLGEKLTNEEVEEMIKEADMDGDGTINYEEFVKMIMQK 832
             +  T+EQ+ +F+EAFSLFDKDGDGTITT ELG VMRSLGQ+PTEAELQDMINEVD DGNGTIDF EFL MMARKM+ TD+EEEI+EAFRVFDKDGNGYIS+ ELRH+MT LGEKLT+EEV+EMI+EAD+DGDG +NYEEFV+M+  K
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00059721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM33.925e-7777.70Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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