TCONS_00059803 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059803
Unique Name	TCONS_00059803
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1758

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_331:531516..547200+

transcript sequence

>TCONS_00059803 ID=TCONS_00059803|Name=TCONS_00059803|organism=Clytia hemisphaerica|type=transcript|length=1758bp
GGCGGGTGAAATGTTCCTGTGGAAAATCAGCGATCAGCAGTAAAAACACC
GGATGAAGATCTGAAGTAACTACTCCATAGAATGATGCTCCAAGGATTTA
GAACAATAACATAGAAAAATCATGCAACAACCAGGATATCCACCACCTGG
ACAACCAGGATATCAGGGGCAGCCTGGTTACCCCCCTGCTCAGCCTGGCT
ACCCACCAGCTGGGCAGCCTGGTTATCCACCACCAGGACAGCCAGGTTAT
CCACCTGTTATGCAGCAACCAGGAGGAGCTCCAGGAGGAGAATGGATGCC
AATGGTTGCTCAAGCACCACCAAATTGTCCACCAGGTCTGGAATACCTTA
CCCAAATTGATCAACTAATTGTTAAACAGCAAGTTGAATTACTTGAAGcT
TTCACTGGGTTTGAAACAGCCAACAAATACAAGGTCAAAAACTCCCTTGG
ACAGACTATTTATTTTGCTGCGGAAGATACTGATTGTTGTACAAGGCAAT
GCTGTGGACCAGGCCGACCTTTCGATATGAAAATCATGGATAATTCACAG
CGTGAAGTTATTCATTTGGTACGTCCCTTGAGATGTACTGGATGTTGTTT
CCCGTGTTGTTTACAAGAAATTGAAGTCAGCTCACCTCCTGGCACACCTA
TTGGATACATTACACAACAATGGTCGTTGTGTGCACCGAAATTTGAGATT
CAAGATGCTCAACATAATCCTGTATTGTTGATTGAAGGACCTGTCTGTAC
ATTCAACATGTGTGGAGATATCGAGTTCAAGGTGCTAGCATTAGACGGAT
CCAACCAGGTTGGGCGTATTTCGAAACAATGGGGCGGATTTGCTAAGGAG
GCTTTTACGGATGCCGATACCTTTGGAATCACCTgaTTTCATGTTTTTCG
AGCAATCGGCCAACCAAGACAATCAAATGACAATTAACGGTTAAAAGTGC
CGGCATCCGAAAAATCTTAAGTAGCAAGTAGTGTGACGTAATCTTGTTCT
AAGCACATATATGGTAGATTTAGACATACATGTTATCACTAATCACTAAC
CAGAACTAATAGGGAAATTGGAAGAGTCTTATAGTTTTATTCGGTtttat
ctttttagaaatcacacaatttaaaaaaaatgattcgCTAGGATCATGTT
TGCTTTTATGTCTTTgtgtgaaatttttattttgaaatgataattttatt
tctgatttttgtatattttgattttgggttcaactattttttttgtaatt
cagataatttttttgtataaataatCGGATCTTGGAAGATAATATAGGAG
TAGTATATAGTAGTTTTTAAACCAATAAAGCTTCCGGTGTTggatctatt
catgatatgcatgacgtaatgttttatacggcaAAACCCAAAATGCCCTG
GTGTTAACCACtaattttactaattttcaaaattagggGAAAGACCCTGT
TTTTTTTGGGCCCTTCCGTGTATAAAATATTACCTCACGAATATCGCGAA
TTTTAATCACTTACAATTTCTTGGTGATTCTGCAAATATAACCACATCAC
TACAGCATCATTCGATTTAATTTTTTGGCTCCTCATTATTGATTAATTAT
TATTTTGGTTTAAAGTTTAactaatttgatttaaaaaatgtaaatcaCAT
ACCGTATATATTTTAGTTCAGTTTGGTCTGCTGGTTTGTacataataaat
atttttagaaaatcttgattcgatttcttgtctttgaaataaataattac
taaaaata

Run BLAST on NCBI

transcript from alignment at scaffold_331:531516..547200+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059803 ID=TCONS_00059803|Name=TCONS_00059803|organism=Clytia hemisphaerica|type=transcript|length=15685bp|location=Sequence derived from alignment at scaffold_331:531516..547200+ (Clytia hemisphaerica)
GGCGGGTGAAATGTTCCTGTGGAAAATCAGCGATCAGCAGTAAAAACACC
GGATGAAGATCTGAAGTAACTACTCCATAGAATGATGCTCCAAGGGTATT
AAATTATTTCATTAATTGGGTCTTGGGAatcttattttttaatttcagca
CTAACATTTCCATCTCTTTATTCGTTAAGACTCTGAGGTTGTAGACTATC
AATGTTTGTGTtttttcattccattttatagTTTGTATAATATATGAAGT
AAGTGTTCTTAAAAATCCCATTTATACTGCCATCATAGCAACCTATTAAT
TAAAACTCTTTCTGAATTGGTTTGGTTTGTTCTATTTTTAATACAATTTG
AAAGAATTACTTTTAGACAGTCTGACAGTGAATACTTCTTTTTGGTAATG
TAAATAAAGGCTGCAACAGAAAAATTagatcactttcactttcactttct
ttcactTGCTGGTATCCCTTTTGCTGGGAAAATTCTAGTTGTCATCAACG
ATCCTGTTGTTTTGTTTCCGCAGAAATTCTAAGTCCCGAATAGCGTGGAT
attaaatttacagaccagaataatcAACCGTAGTAGGGTTACCCAATAAG
ATACTATTTACTCGATCGGGAAacgatttgatattttttatcaaaacgcA
CATCCTCTTTGGGATATGCATTTTAGACTTGatcttcaaatcttcaaatg
aaaaggaaaattttgagaaaagggGAAGCTATAAAAGGCacctcataaaa
tattttaaatttagaTATCGATTGACcagaggatttatttaaaagttCAC
CGCAGTGGAaaactttaaataaaagaaagacattctACGGTtctacttta
attttttttcttaaccttttccAGGCATGAATTTGCTTTTGTATATCGAA
TTGCTTTATTGCGTACAAAAGTTTACGAAGTTTGATATAGGATGCGTTTT
CCAATTGGGTAAATAATAGTGGTTATGAACGAAAACGAGTCTCATGTTCA
CAAGccaaaagaaaggttttttaaaCACGCCAATTATATGATTATACACC
ATCCACTCATTCAAACAATTGCATAAGAACAGTGGTTATCATGCATTGCG
CTACTAGCACTTGGGGAGCCaattggttaattttgtttCCCGCCCGCATT
TCATAACAATACGCATAACAAGAAATCATAAACTTACGTCATGAgtttat
tctggtctgtaaactTAATACCCATGCTCTTCGGGACTTAGAATTTTTGC
GGAAAAAAAACAACAGGATCGTTGATGACAACTAGAATTTTCCCTTTTGC
TGTGaatggtttaaaaaaatctgCAATAAATGGCATTCAACAGTTCTCCT
GGGGGGGATTCAAATAAGGGATTCAAATAAGGCCCATAACTAGGTCTTAG
AAATTGGACTTTttcagtgcagagaaaatttagtcaaatttgagtaaatt
tggctgaaaaatctACCGTGAGCCAGAGGCTAGGCTATCCCTCAAacaaa
tgacctggctggtcattaaaatacaaaattaaataaaaataaaactggta
gagtagagctgcaagcggagctgcgtggttcatttgttttgaaattttcc
tgCTTAGATTGGTCAGtcgtcatttgagggctatgcatgttagcctccac
tgatgcaagttacccggtACTaaggtgcattttcttgaaagaaATATGGT
CAGGTTATCTAAAttttaccgtgagattgggtaacttgcatcagtggagg
caaacatcacaagtgttacgcgtaagccaaatcgtgTATTatgaacaacc
tctaaattgccaagtacaggagaaaaaaaatcgaaattcaaaatggcggc
caagcccacgatgataactatcaaaaatcttcgttttttattcagctatt
gcagctcaataaatcaatgaaataatttgaaataaaaagtaaacaaacct
cttgaacctttcatgaatccaaataaataaaagtattcatctaaagtgaa
gattacatttcaaaattcacacgtgaccagaatttttatccagggaaatg
ccgtggccgcaatgttttgctttagtgagattgaccattttgttgtttag
atttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgttggaa
tactggttgaaacacttgtgacatgcatagccctcaaatgaatgacctgt
ctggtgattaaaatacaactacgcagctccgctcgcagctctactctacc
attttttttttatttaactttttattCCTGTATAATACAGATGCAGTGCA
GGGAGTGATTAAAGCTAAGAAATTGCCTACCCTAAGTATCAGacttcaag
ttttcaaagataaATTATTAATGAATTTGGAGCTGTGGTCCTGTTATCCT
GCAGGATAATTTGCAcccagaattaaaaaaaatagttaAACCATCGCATC
AAATTGGTGTTGCGATTTTTGTCATCTCagagaagaagtcattgcattgt
tttttcgcgcgcgttctattttgcgccaatcaaattgcgtcacgtATTCG
AAAGAtgcgaaaatgttgcaatcaaaatcaaaacaaaaatttccatttGT
GACTTTGTCAGTTTGGCTTTTGAAAAGAACAcattgagcttttcaaaaaa
taaaacctttaattattACTCtcattctaaaaaataaaacctgAGAATGA
aggaaagttgtaaaattaattaaGTGGAGATTTGATTGGAAAGAGGTATG
TATGTAGAGAAATGGAATGCCTTTTTTGCTTCAGTTTTCGCTGTAGACTT
TCCTgccttcgaaattcagttttcgaAGGTAGCCTTTATTATTTATCCCA
ACTTTATTCTTATCAAATGGTgattcaattttggatatcaaaaactccca
aggatgaccagtaagtttttatttaatttggagatgaaaaaaatggcaaa
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTGCCATGATTCACTGT
AAACCTTGGAACACGATagaatttcagatttttgttaaaaaagtcaGTGA
AGTTCAGAGGCTGTAGTAGTACACAAATCTTTAGAGTTAAGAGTCCAAAT
AAAAACCAATTGGTAGACaaattattgtatttttcagaAATATATACATT
TCATAACTAAAAGTGATTATAAACACCTAAAAAAGTGATATTAGAGTGGG
CTAAATCGTTAAATATGACCCGCGCGCCATTTCTGATGTGATTTCGAAcg
ttttacccccgtctttttgacgtttatgattcgaacgtcaaaattaggAA
ACCCCATTTGGCGCGATGCAATGAAAATAACTGAAGCTACCTCCAGCTGA
AtgtaattttcttttaagtAACGATCTTCTAAATTGAAAAGCTATCCAAT
ATTGACAAATCAACCTATCCCTTCCATTTCTAGACGGAAAATGACTTAGT
TTCCAATACTATTCAGTTTTGTCTCCCATTTCCCCACGTTTCCAAATCGC
TTCCTAGGCATTTCCatatcgtttccacccgtttctctGTCGTTTCTCCT
CGTTTCCTGGGCGTTTCACGTTTTAGTAAGTACGGTTATTTGGTATAGAA
AAAAGTAAACCCCTATTaaccatatatttttggaatcgtCTTAATgagct
ttttcatattttgttataAGTTTAGTGATGATTCCCAGACCTCATTTCCT
CTTTAATGTCCGAGTTTGTGGACTTTGTATCCTAATGATTGTAATGTCTG
ATTTTAGGCACACTGTGTGGAGGTGTGGACattctttttaagaaaaatgg
TCGGAAAATGATACCATGGTACCATGTCtacaaaaaggtctattaactTA
AGTTTTTAGTAGAGACGCCCAAGAAATATGACTTTCTGTAGATATTTtgc
attttattttgtttaaaaaatttaacaCTATAAGGATTATCAATTTCAGG
ACTCCCAGATGTCCTAATTTTAATTTNAAAAAATTTAACACTATAAGGAT
TATCAATTTCAGGACTCTCTGATGTCCTAATTTTActagtttttgagaaa
tttggaaaaatattacAGTAATTTGCTAATTATTGTCCAaagtattttag
ttttttgttttttcttattattgatTATTTTGTCCTTGTCCTCCTAATAA
TCAGTTTAATCAAAATGTAGCttgaaataacttttttttacttcttttac
TACTTTTCTTACTCCTATCTTTACCTAACATTAAAGTTTTGCAGATAACT
TTGATTGTAAACTATTTATTATTATCTTATATCTTTATTAAAtacaaatt
ttgtatttcttACAGTAGATTATTAAAGATAGTATTCATTTGGAAATATT
TTCCATCTTGTTCTTAACATTGAAAATAATTCCATGTCTGAATGCTTATA
AAAGTTTAATCTGATTTTGAAGGATAAAGCAGTATGTAAAATGATcttgt
tttgtattttgaatcTCAGCATCTCACCGCATGCGATTAACGACAGTCAC
ACTGTCTTGTCACATCTAAAACATAGTTTACATCAGCTTTTAATTAGAAA
GAAATTATGTGATAATCAGAATTATTACTATATAATGATCGGAATTTTTA
AAAGCAGCATATCATTTCGTGTGCAATTAAATTTGAGTAGTTGTGGGCTG
GCTTAGATAAGACATGATTGTTAACTTCCTCTATAGAACTGCTAACTATg
ctattttccaatttttttatgTCTTGACGTGAAATCTTAAAGTCATTTCA
AGTGTTTTGTCATGATTCAAGTAGGTGTCGTCTTTTTTCCTATAATGTTA
GAAAGATAGAAAGAAGCATACCAAATGTGATGGAGGAgaatatttttctg
aaacttGAATTTACTCTTTGACAAAAggttattttgtttattttgtggCT
TGTTGACTAACTTCTCAAATTTCACACTGTTAGAAATGTTGAGATGTATT
GTTTGGAAGAGTAATTAGATGATCAGAgcactttcttttattttgaaaaa
gaagtttCTAACCCATATGAATAATGGTCTGCATTTCTTTGGTAAGAAAT
CTATATCTATAGAATAACTATACCAACTAAGGTATTGTTAAGTGAGGGGA
GGGTTTACTGACAGAGCTTTGATACatacttgagaaaaattttcttctcg
NTATAACTACTAAGGTATTGTTAAGTGAGGGGAGGACTTACTGACAGCGG
TTTGATAcctaaatgaaaatttttttgttataatATTCCTTCTCACTGTC
CTTTTAGATTTAGAACAATAACATAGAAAAATCATGCAACAACCAGGATA
TCCACCACCTGGACAACCAGGATATCAGGGGCAGCCTGGTTACCCCCCTG
CTCAGCCTGGCTACCCACCAGCTGGGCAGCCTGGTTATCCACCACCAGGA
CAGCCAGGTTATCCACCTGTTATGCAGCAACCAGGAGGAGCTCCAGGAGG
AGGTTTGATCTTTGTTGCTTTTTTACGACTTTCATGTCTAGGAAACATGA
TAATTAAAATGAGTTTTCATTCCAACTCAAATAGACTAAAAATAGTTCTT
TTAatcttgtttaaaaaaaatagaaattagaACTATTTGCAAATGATTTG
AGCAAATTTTTAACAAAGCCTTGTAAATTTCACCTAAacacaaataaaaa
tgaattaggaggcaaaataaatttatagcaatagcaaaacttttgaaaac
aaaGTATTAAAATTGATACACTTTTTAAACTTCACATACATCATCCACTA
AAAAtgacttttatacaaaaaactGTTAAATTCCATGAGGTTTCATTCTG
TTGAAATCANCGCAATAGCAAAACTTTATGGCTTTTAAGTTTAATACGAA
AAACTGTTAAAATTCCTAGAGGTCTCATTCTATTGAAATCCTTTACAGAA
TGGATGCCAATGGTTGCTCAAGCACCACCAAATTGTCCACCAGGTCTGGA
ATACCTTACCCAAATTGATCAACTAATTGTTAAACAGCAAGTTGAATTAC
TTGAAGGTAGATATGTTTATGGCATttaaactttcatttttcattgtttt
aagtTTTGTCAATAATTCACCTgttgtattttattttgaagaatgaGGGC
TTTTAGCTCAAATTTATAATATTATATAAAAGTTAGAGAAATTTCTCTTC
AAGCTGAATTTTGGCACAATGATCTGCTTCCAAGGAAAACATAAGGAACC
TTTTCAATctttttagattatttttcttttgtttttatttatagcTTTCA
CTGGGTTTGAAACAGCCAACAAATACAAGGTCAAAAACTCCCTTGGACAG
ACTATTTATTTTGCTGCGGAAGGTATATTAGTGTTATGATATTTTAGCTA
AGCCAATTATTTTCCTAAATTATGGCTGAATGTGTTTATTATTGTTCAAA
CATAACCCAAGGTCCACTTCCTGGCTTTTTTAACTGGGCGGCACAAATGC
TTAAATTCTAGTTTTTAAGGTAAAAATGGATGAAgcaatcttttatttta
aaataggGTATTGTAAATGTGTTATTGTTCACTGGTTTCCCATTCTTAAT
TATAAATTTAATTATCAATTCCAATTCAGTTGTTTTCTTATTTGGAATTC
tagtgtttttctttctttttgactcatcttcatcaaatttaaacTCAAGA
AATTCAGCCATCTATCTCTCCATAGAATGTTCAATTGTAAGATGAATTCT
ATGGAAATAATCAAAAAGCTGTCTAGATTACTTTGTGGTCATAATAAAAT
GATCTTGTTAATAAATCCTAATTTAGATACTGATTGTTGTACAAGGCAAT
GCTGTGGACCAGGCCGACCTTTCGATATGAAAATCATGGATAATTCACAG
CGTGAAGTTATTCATTTGGTACGTCCCTTGAGATGTACTGGATGTTGTTT
CCCGTGTTGTTTACAAGAAATTGAAGTCAGCTCACCTCCTGGCACACCTA
TTGGATACATTACACAACAGTacgtagcctatactagactttttcgaatg
ttttgagcccaggttttcgggctctttaaacattcgattttttgacgtca
ctttaaacgttTGAAGCCCCTACAGtataaaaaatcgaatttgcttCAAA
ACACTTGAagggcttctatttttcgaaaatcgtcaaagtggaactcacta
agaaacgggataaaaaatttcggtttttagtgaggtactCATTTAACAGT
ACGGAGAAGTATTTATATTCTTTTgcaaattaaaacaaattttgtctCCG
CCTACTGAATACTACTGAATAAAGCAATAAAAAAGGATGTCAGAAAATTT
AATATAGAAGTGGAGGAAGAAAGAAATTAGGTActatgaaattcaaaatt
tgattaaagTTATGTTTATGCAGGTCTATGGTGTTACATTACCAAACGTC
GCAAGTTAGCAATTTTTGTCTGAATAATTAATGGGGTAATTAAAGGAGGA
TGTCAGAAAATTTAATCTGGAAGTGGGGGAAGAAAGTGCTAAATTAGACg
tacataaaatttaaaaatagatCGTTAGTTTTGTCTGTATGttaaattaa
aagttttgtttttaaataagagtgacatcgtttgcttactcatcaatttt
aatttacaagctttttgatattgaattgacacggatgtggagcaagattg
gtcagaaaaaggacaagaaaaacattttttgcttatatcagcaaaatata
acaataggcaaacactgtcctgatatgaaacatgtgccttatatgaaacg
ggaacacttaaaGTAAAACCTTCAACAAACGCCTGGTTTTGCCTCTCAAG
AGAAACTTTTTGTGAGATATTGAAAAAGTAACATTCTTCTTCGTTTAGAT
GGTCGTTGTGTGCACCGAAATTTGAGATTCAAGATGCTCAACATAATCCT
GTATTGTTGATTGAAGGACCTGTCTGTACATTCAACATGTGTGGAGATAT
CGAGTTCAAGGTAACAATCTTATTTGTTTAGTCTATACATCTTTGTCCGA
TAGCCCCTTTCTATTGCCAAGTTTTCGGTTTTGCTCAGCCTTTTATTTTA
ATGAtactttttaggtttttattgaagaaaaaatgtaGTTCGTTCGTGGG
TTTTATCACAGGTCAGTCAATGTGTATTATCCAGAATATACATTTGGGAG
GGTCTCTTAACTTAAAGAGGGTGTGAGAATATTAGTATAAATGaataaga
aattattttcacaccatagaaaagttactttctggCGCATCTTTTTTTGC
AATACACTTTTTTGAAAGTAACAACATCTAATTCTCGCCTCTACATCGTA
TTGCTAGCGAACTCCGTCATAGATTTAGACTAATTGTTTTTTTCGTTTTG
ATAAATTCTTGAAGTATGCAATCTCTCCTTTTTTCCTTATAGGTGCTAGC
ATTAGACGGATCCAACCAGGTTGGGCGTATTTCGAAACAATGGGGCGGAT
TTGCTAAGGAGGCTTTTACGGATGCCGATACCTTTGGAATCACCTGTAAG
TTAATTCAGTAGATTTGGGGTGGGTTTACATCTGAAAAATAACAATTCAG
AACATAAACgaaacaaaaactcaaaatcatTTAATACGAATTCTTTTATA
CAGACAACGAAAAACTGAAGAGTGTATATTGTAATTTTGTTCAAAACGGT
TAGTTTGCTGGTGATGATCAACCCAGAAGAAACTATTAGTACTAAAAAag
tgtttctcttttttcataTACACAATTGTTTCAAGAAGTAGGCACCAGGA
CATAGGACTTAACGAGGAGAAGGCCCTTGTTGAGACATCGGAAAATCAGA
TAACAGATTTTCCAATTATgcgttttttgtaagaacaagaCTAATAATAA
GAACATTAAGACTTCGATCATGGCCAAAATGTAAGAACaaggtaagaaca
ttttaaggcttcgtggaccCTATAACTATAAAAGAAATCGCACATAAATA
CTCAGGtgaattaagaatatttttttggcTTTAAACCTTATTAGGTTAAC
ATCCGACaggctttgaaaattttagacgtttttatgaaaaaaagacgtgt
aaatTGATTCCCCGCCTATTGCAACATTTTTCTATAGTTttgctttaacc
ctattcgtactaggggggggctctttctgttctgaggtcaaactattggt
aatagctcctgaaataataaagcttttgccgtgaatttttctgtaaattc
ctaaattttatttagcttcaaaataaaaaaaaaattgacagctaaaaatt
ttcacaccttgagcatgatgacatttctgacagtaaggtgtcacaaaaat
tgacacttttccaatacaaattaattttttatgtcaaatatatcgtttaa
accgtaatttattgaatattcaggataaaataagcattttaaactctggc
aacttttttctaaagcctttgttaaaatacaatagctatttataagaaca
aaggaaattttcggtttttgctcactttgggtatgatgaatgacgtcatc
aaaaaaattttttgtcaaaagttaccttacgtcacaaggatcttgtgtgc
caaatttcatccaaaaagacccactagatcaaaagttaaggggtggtaca
ggaaaagcccccccctagttctgaaccgcccctaaaagcctagtatgaat
agggttaacaaATAAGTGTTCTATCAAGCTATACATATAGAGGACCTCTA
CCGTGAAGTTGGACATTTATTTTATACAGAACTGTTTACAAGAATCTAAA
GTGTACGTTGAGTGGGATAGAGACTCTTAACAAGGGTCTGAAAGAGGTCT
CGGAGGATTCGTTTTAAAGTAGGGCCCTTACTTTGTGATTAAAGAGGGGT
GAGGacattttaataaaataaatcaaGATTTGAACTTTTCGGattgataa
atcagaatagttAAAAACACCATTCATTTAAACAAATCTCAATGGAACTT
TAATCGAAAtcaaacgggttttttttaacGATATCAAttattgattttta
gtttgacagcTTGTGCCCGCGTGGTTCAATGGTCATGAATGAGGAATTCT
ACAATAAATTTCTTTAGCGTCTTTACAtgatttgtttacttttttgaaat
cataataaaaatgtttaaatgtGCAACGAATGTCCGAACCTCGTACGTAA
TGATTTTACATCGTGTTCCAACTTTTACTAACATTAAATACAAACTTCAA
ATCAaggattggaaaatatatttcatatctATATGACTTTCGTATGGTTA
CTATGATTACTGAAAACTAGTAAAGTGAATCAATCAATAATTCATCGAAT
GTCTTTTTAAAGAAACGCATAAAGTACaaatgtttttcgtttttttttca
caagtttttgTATTATTTGCGGCCTTTATTTTAATTTGCATCACAAAGAG
ATTGGACTCGAGTTTAAAAGTTTTGTCGCTgctttgaatttcaaaaagta
gTTCTTTATTGCAAACACTTCACAAAGTAACCAATTTGTCCAAGCGTATG
TACTACTAGGCGGACCAAAGAAGatcatcattttttattttctcagtGAA
AAGTGATCCTGAAAAATAGGTGAACCAATCATAGGGCCCGATACCCTTTC
AGATATAAACTATTCAAGTATTTAGCGTTCATGATCAGCATTAGAGCATC
AAAGTCCGACCAGACTTAAAAAGATAAGCTAAAAGAGCGGACCTAGTCAG
TCAACTTCCCGATGAGGAAGAATCTTCTCAAACGGACAGAAAAAATTTGA
GTGAATTCTCCCCGTTCGGGAAGTTTTTCCCGGTTTGGTTAGTGGTGTAG
ACTGTCAATGAGAGCTCGTCAGTCCTAATGCACTCCTATTTCACAATATT
GTTCAAAAAATTCCTTGAATGCAGTTTTATCGGACAATTCTATGGACTTG
ATTAAATACCAACTACGGATTCGATGATTGATCATTAAGAACATTAATTG
CTAACTATTGAAGTCACTTCAGCTTTTTTTCGTGTCGAGAAAATggttct
aggaaaattgcccccgagaaaattgccccccggaaaactgcccccggaaa
attgccccccggaaaattgccccctaggaaaactgCCCCNNNNNNNNNNN
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cagtcagtcagtcagtcactCAGTCACTCAGTCACTCAGTCACTCAGTCA
CTCAGTCactcagtcagtcagtcagtcagtcagtcagtcactCAGTCACT
CAGTCACTCAGTCACTCAGTCAGGATGTGTAAACAAACTAGAAACTTACC
ATCTCTGTCTtggctttttaaattttaaggacTTCGACTTTTGGGGACTG
GGACAATTTGTCACTATTCCTACAATCGAACCCTCGAATAGTTGgaaaaa
tactgaagttgagcccattGCGGTCACGTTCGCCTATAGCTTCAATTTTC
GCCTTAATTCTGTTTCTTATTCTAACATTGGaaatttgcattgttttttc
tttttttctaggaTTTCATGTTTTTCGAGCAATCGGCCAACCAAGACAAT
CAAATGACAATTAACGGTTAAAAGTGCCGGCATCCGAAAAATCTTAAGTA
GCAAGTAGTGTGACGTAATCTTGTTCTAAGCACATATATGGTAGATTTAG
ACATACATGTTATCACTAATCACTAACCAGAACTAATAGGGAAATTGGAA
GAGTCTTATAGTTTTATTCGGTtttatctttttagaaatcacacaattta
aaaaaaatgattcgCTAGGATCATGTTTGCTTTTATGTCTTTgtgtgaaa
tttttattttgaaatgataattttatttctgatttttgtatattttgatt
ttgggttcaactattttttttgtaattcagataatttttttgtataaata
atCGGATCTTGGAAGATAATATAGGAGTAGTATATAGTAGTTTTTAAACC
AATAAAGCTTCCGGTGTTggatctattcatgatatgcatgacgtaatgtt
ttatacggcaAAACCCAAAATGCCCTGGTGTTAACCACtaattttactaa
ttttcaaaattagggGAAAGACCCTGTTTTTTTTGGGCCCTTCCGTGTAT
AAAATATTACCTCACGAATATCGCGAATTTTAATCACTTACAATTTCTTG
GTGATTCTGCAAATATAACCACATCACTACAGCATCATTCGATTTAATTT
TTTGGCTCCTCATTATTGATTAATTATTATTTTGGTTTAAAGTTTAacta
atttgatttaaaaaatgtaaatcaCATACCGTATATATTTTAGTTCAGTT
TGGTCTGCTGGTTTGTacataataaatatttttagaaaatcttgattcga
tttcttgtctttgaaataaataattactaaaaata

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037624	XLOC_037624	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_331	supercontig	scaffold_331:531516..547200 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.22922	2.03512	34.6354	69.7107	4.08788e-05	4.44811	16.1436	12.5632	4.93672	2.17844	12.69	4.01871	18.0449	35.4598	15.082	10.7849	20.3725	24.5956	13.3127	16.2514	9.80004	14.7645	7.17887	13.0541	38.1931	26.0102	6.6506e-06	3.09688e-06	2.31635	2.36007

Blast

[Close]

BLAST of TCONS_00059803 vs. Swiss-Prot (Human)
Match: PLS1 (Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 2.129e-74
Identity = 123/201 (61.19%), Postives = 149/201 (74.13%), Query Frame = 2

Query:  278 APGGEWMPMVAQAPPNCPPGLEYLTQIDQLIVKQQVELLEAFTGFETANKYKVKNSLGQTIYFAAEDTDCCTRQCCGPGRPFDMKIMDNSQREVIHLVRPLRCTGCCFPCCLQEIEVSSPPGTPIGYITQQWSLCAPKFEIQDAQHNPVLLIEGPVCTFNMCGDIEFKVLALDGSNQVGRISKQWGGFAKEAFTDADTFGI 880
            A G  WMP   Q P NCPPGLEYL+QIDQ+++ QQ+ELLE  TGFET NKY++KNS GQ +YFAAEDTDCCTR CCGP RPF ++I+DN  +EVI L RPLRC+ CC PCCLQEIE+ +PPG PIGY+ Q W  C PKF IQ+ +   VL I GP    + CGD++F++ +LD    VG+ISK W G  +EAFTDAD FGI
Sbjct:   80 AAGVPWMP-APQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGI 279

The following BLAST results are available for this feature:

BLAST of TCONS_00059803 vs. Swiss-Prot (Human)

BLAST of TCONS_00059803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PLS1	2.129e-74	61.19	Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR...	[more]

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TCONS_00059803 (transcript) - C. hemisphaerica