TCONS_00059804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059804
Unique NameTCONS_00059804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059804 ID=TCONS_00059804|Name=TCONS_00059804|organism=Clytia hemisphaerica|type=transcript|length=1741bp
ATTAGATGATCAGAgcactttcttttattttgaaaaagaagtttCTAACC
CATATGAATAATGGTCTGCATTTCTTTGATTTAGAACAATAACATAGAAA
AATCATGCAACAACCAGGATATCCACCACCTGGACAACCAGGATATCAGG
GGCAGCCTGGTTACCCCCCTGCTCAGCCTGGCTACCCACCAGCTGGGCAG
CCTGGTTATCCACCACCAGGACAGCCAGGTTATCCACCTGTTATGCAGCA
ACCAGGAGGAGCTCCAGGAGGAGAATGGATGCCAATGGTTGCTCAAGCAC
CACCAAATTGTCCACCAGGTCTGGAATACCTTACCCAAATTGATCAACTA
ATTGTTAAACAGCAAGTTGAATTACTTGAAGcTTTCACTGGGTTTGAAAC
AGCCAACAAATACAAGGTCAAAAACTCCCTTGGACAGACTATTTATTTTG
CTGCGGAAGATACTGATTGTTGTACAAGGCAATGCTGTGGACCAGGCCGA
CCTTTCGATATGAAAATCATGGATAATTCACAGCGTGAAGTTATTCATTT
GGTACGTCCCTTGAGATGTACTGGATGTTGTTTCCCGTGTTGTTTACAAG
AAATTGAAGTCAGCTCACCTCCTGGCACACCTATTGGATACATTACACAA
CAATGGTCGTTGTGTGCACCGAAATTTGAGATTCAAGATGCTCAACATAA
TCCTGTATTGTTGATTGAAGGACCTGTCTGTACATTCAACATGTGTGGAG
ATATCGAGTTCAAGGTGCTAGCATTAGACGGATCCAACCAGGTTGGGCGT
ATTTCGAAACAATGGGGCGGATTTGCTAAGGAGGCTTTTACGGATGCCGA
TACCTTTGGAATCACCTgaTTTCATGTTTTTCGAGCAATCGGCCAACCAA
GACAATCAAATGACAATTAACGGTTAAAAGTGCCGGCATCCGAAAAATCT
TAAGTAGCAAGTAGTGTGACGTAATCTTGTTCTAAGCACATATATGGTAG
ATTTAGACATACATGTTATCACTAATCACTAACCAGAACTAATAGGGAAA
TTGGAAGAGTCTTATAGTTTTATTCGGTtttatctttttagaaatcacac
aatttaaaaaaaatgattcgCTAGGATCATGTTTGCTTTTATGTCTTTgt
gtgaaatttttattttgaaatgataattttatttctgatttttgtatatt
ttgattttgggttcaactattttttttgtaattcagataatttttttgta
taaataatCGGATCTTGGAAGATAATATAGGAGTAGTATATAGTAGTTTT
TAAACCAATAAAGCTTCCGGTGTTggatctattcatgatatgcatgacgt
aatgttttatacggcaAAACCCAAAATGCCCTGGTGTTAACCACtaattt
tactaattttcaaaattagggGAAAGACCCTGTTTTTTTTGGGCCCTTCC
GTGTATAAAATATTACCTCACGAATATCGCGAATTTTAATCACTTACAAT
TTCTTGGTGATTCTGCAAATATAACCACATCACTACAGCATCATTCGATT
TAATTTTTTGGCTCCTCATTATTGATTAATTATTATTTTGGTTTAAAGTT
TAactaatttgatttaaaaaatgtaaatcaCATACCGTATATATTTTAGT
TCAGTTTGGTCTGCTGGTTTGTacataataaatatttttagaaaatcttg
attcgatttcttgtctttgaaataaataattactaaaaata
Run BLAST on NCBI

protein sequence of TCONS_00059804-protein

>TCONS_00059804-protein ID=TCONS_00059804-protein|Name=TCONS_00059804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MQQPGYPPPGQPGYQGQPGYPPAQPGYPPAGQPGYPPPGQPGYPPVMQQP
GGAPGGEWMPMVAQAPPNCPPGLEYLTQIDQLIVKQQVELLEAFTGFETA
NKYKVKNSLGQTIYFAAEDTDCCTRQCCGPGRPFDMKIMDNSQREVIHLV
RPLRCTGCCFPCCLQEIEVSSPPGTPIGYITQQWSLCAPKFEIQDAQHNP
VLLIEGPVCTFNMCGDIEFKVLALDGSNQVGRISKQWGGFAKEAFTDADT
FGIT
Run BLAST on NCBI

transcript from alignment at scaffold_331:537979..547200+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059804 ID=TCONS_00059804|Name=TCONS_00059804|organism=Clytia hemisphaerica|type=transcript|length=9222bp|location=Sequence derived from alignment at scaffold_331:537979..547200+ (Clytia hemisphaerica)
ATTAGATGATCAGAgcactttcttttattttgaaaaagaagtttCTAACC
CATATGAATAATGGTCTGCATTTCTTTGGTAAGAAATCTATATCTATAGA
ATAACTATACCAACTAAGGTATTGTTAAGTGAGGGGAGGGTTTACTGACA
GAGCTTTGATACatacttgagaaaaattttcttctcgNTATAACTACTAA
GGTATTGTTAAGTGAGGGGAGGACTTACTGACAGCGGTTTGATAcctaaa
tgaaaatttttttgttataatATTCCTTCTCACTGTCCTTTTAGATTTAG
AACAATAACATAGAAAAATCATGCAACAACCAGGATATCCACCACCTGGA
CAACCAGGATATCAGGGGCAGCCTGGTTACCCCCCTGCTCAGCCTGGCTA
CCCACCAGCTGGGCAGCCTGGTTATCCACCACCAGGACAGCCAGGTTATC
CACCTGTTATGCAGCAACCAGGAGGAGCTCCAGGAGGAGGTTTGATCTTT
GTTGCTTTTTTACGACTTTCATGTCTAGGAAACATGATAATTAAAATGAG
TTTTCATTCCAACTCAAATAGACTAAAAATAGTTCTTTTAatcttgttta
aaaaaaatagaaattagaACTATTTGCAAATGATTTGAGCAAATTTTTAA
CAAAGCCTTGTAAATTTCACCTAAacacaaataaaaatgaattaggaggc
aaaataaatttatagcaatagcaaaacttttgaaaacaaaGTATTAAAAT
TGATACACTTTTTAAACTTCACATACATCATCCACTAAAAAtgactttta
tacaaaaaactGTTAAATTCCATGAGGTTTCATTCTGTTGAAATCANCGC
AATAGCAAAACTTTATGGCTTTTAAGTTTAATACGAAAAACTGTTAAAAT
TCCTAGAGGTCTCATTCTATTGAAATCCTTTACAGAATGGATGCCAATGG
TTGCTCAAGCACCACCAAATTGTCCACCAGGTCTGGAATACCTTACCCAA
ATTGATCAACTAATTGTTAAACAGCAAGTTGAATTACTTGAAGGTAGATA
TGTTTATGGCATttaaactttcatttttcattgttttaagtTTTGTCAAT
AATTCACCTgttgtattttattttgaagaatgaGGGCTTTTAGCTCAAAT
TTATAATATTATATAAAAGTTAGAGAAATTTCTCTTCAAGCTGAATTTTG
GCACAATGATCTGCTTCCAAGGAAAACATAAGGAACCTTTTCAATctttt
tagattatttttcttttgtttttatttatagcTTTCACTGGGTTTGAAAC
AGCCAACAAATACAAGGTCAAAAACTCCCTTGGACAGACTATTTATTTTG
CTGCGGAAGGTATATTAGTGTTATGATATTTTAGCTAAGCCAATTATTTT
CCTAAATTATGGCTGAATGTGTTTATTATTGTTCAAACATAACCCAAGGT
CCACTTCCTGGCTTTTTTAACTGGGCGGCACAAATGCTTAAATTCTAGTT
TTTAAGGTAAAAATGGATGAAgcaatcttttattttaaaataggGTATTG
TAAATGTGTTATTGTTCACTGGTTTCCCATTCTTAATTATAAATTTAATT
ATCAATTCCAATTCAGTTGTTTTCTTATTTGGAATTCtagtgtttttctt
tctttttgactcatcttcatcaaatttaaacTCAAGAAATTCAGCCATCT
ATCTCTCCATAGAATGTTCAATTGTAAGATGAATTCTATGGAAATAATCA
AAAAGCTGTCTAGATTACTTTGTGGTCATAATAAAATGATCTTGTTAATA
AATCCTAATTTAGATACTGATTGTTGTACAAGGCAATGCTGTGGACCAGG
CCGACCTTTCGATATGAAAATCATGGATAATTCACAGCGTGAAGTTATTC
ATTTGGTACGTCCCTTGAGATGTACTGGATGTTGTTTCCCGTGTTGTTTA
CAAGAAATTGAAGTCAGCTCACCTCCTGGCACACCTATTGGATACATTAC
ACAACAGTacgtagcctatactagactttttcgaatgttttgagcccagg
ttttcgggctctttaaacattcgattttttgacgtcactttaaacgttTG
AAGCCCCTACAGtataaaaaatcgaatttgcttCAAAACACTTGAagggc
ttctatttttcgaaaatcgtcaaagtggaactcactaagaaacgggataa
aaaatttcggtttttagtgaggtactCATTTAACAGTACGGAGAAGTATT
TATATTCTTTTgcaaattaaaacaaattttgtctCCGCCTACTGAATACT
ACTGAATAAAGCAATAAAAAAGGATGTCAGAAAATTTAATATAGAAGTGG
AGGAAGAAAGAAATTAGGTActatgaaattcaaaatttgattaaagTTAT
GTTTATGCAGGTCTATGGTGTTACATTACCAAACGTCGCAAGTTAGCAAT
TTTTGTCTGAATAATTAATGGGGTAATTAAAGGAGGATGTCAGAAAATTT
AATCTGGAAGTGGGGGAAGAAAGTGCTAAATTAGACgtacataaaattta
aaaatagatCGTTAGTTTTGTCTGTATGttaaattaaaagttttgttttt
aaataagagtgacatcgtttgcttactcatcaattttaatttacaagctt
tttgatattgaattgacacggatgtggagcaagattggtcagaaaaagga
caagaaaaacattttttgcttatatcagcaaaatataacaataggcaaac
actgtcctgatatgaaacatgtgccttatatgaaacgggaacacttaaaG
TAAAACCTTCAACAAACGCCTGGTTTTGCCTCTCAAGAGAAACTTTTTGT
GAGATATTGAAAAAGTAACATTCTTCTTCGTTTAGATGGTCGTTGTGTGC
ACCGAAATTTGAGATTCAAGATGCTCAACATAATCCTGTATTGTTGATTG
AAGGACCTGTCTGTACATTCAACATGTGTGGAGATATCGAGTTCAAGGTA
ACAATCTTATTTGTTTAGTCTATACATCTTTGTCCGATAGCCCCTTTCTA
TTGCCAAGTTTTCGGTTTTGCTCAGCCTTTTATTTTAATGAtacttttta
ggtttttattgaagaaaaaatgtaGTTCGTTCGTGGGTTTTATCACAGGT
CAGTCAATGTGTATTATCCAGAATATACATTTGGGAGGGTCTCTTAACTT
AAAGAGGGTGTGAGAATATTAGTATAAATGaataagaaattattttcaca
ccatagaaaagttactttctggCGCATCTTTTTTTGCAATACACTTTTTT
GAAAGTAACAACATCTAATTCTCGCCTCTACATCGTATTGCTAGCGAACT
CCGTCATAGATTTAGACTAATTGTTTTTTTCGTTTTGATAAATTCTTGAA
GTATGCAATCTCTCCTTTTTTCCTTATAGGTGCTAGCATTAGACGGATCC
AACCAGGTTGGGCGTATTTCGAAACAATGGGGCGGATTTGCTAAGGAGGC
TTTTACGGATGCCGATACCTTTGGAATCACCTGTAAGTTAATTCAGTAGA
TTTGGGGTGGGTTTACATCTGAAAAATAACAATTCAGAACATAAACgaaa
caaaaactcaaaatcatTTAATACGAATTCTTTTATACAGACAACGAAAA
ACTGAAGAGTGTATATTGTAATTTTGTTCAAAACGGTTAGTTTGCTGGTG
ATGATCAACCCAGAAGAAACTATTAGTACTAAAAAagtgtttctcttttt
tcataTACACAATTGTTTCAAGAAGTAGGCACCAGGACATAGGACTTAAC
GAGGAGAAGGCCCTTGTTGAGACATCGGAAAATCAGATAACAGATTTTCC
AATTATgcgttttttgtaagaacaagaCTAATAATAAGAACATTAAGACT
TCGATCATGGCCAAAATGTAAGAACaaggtaagaacattttaaggcttcg
tggaccCTATAACTATAAAAGAAATCGCACATAAATACTCAGGtgaatta
agaatatttttttggcTTTAAACCTTATTAGGTTAACATCCGACaggctt
tgaaaattttagacgtttttatgaaaaaaagacgtgtaaatTGATTCCCC
GCCTATTGCAACATTTTTCTATAGTTttgctttaaccctattcgtactag
gggggggctctttctgttctgaggtcaaactattggtaatagctcctgaa
ataataaagcttttgccgtgaatttttctgtaaattcctaaattttattt
agcttcaaaataaaaaaaaaattgacagctaaaaattttcacaccttgag
catgatgacatttctgacagtaaggtgtcacaaaaattgacacttttcca
atacaaattaattttttatgtcaaatatatcgtttaaaccgtaatttatt
gaatattcaggataaaataagcattttaaactctggcaacttttttctaa
agcctttgttaaaatacaatagctatttataagaacaaaggaaattttcg
gtttttgctcactttgggtatgatgaatgacgtcatcaaaaaaatttttt
gtcaaaagttaccttacgtcacaaggatcttgtgtgccaaatttcatcca
aaaagacccactagatcaaaagttaaggggtggtacaggaaaagcccccc
cctagttctgaaccgcccctaaaagcctagtatgaatagggttaacaaAT
AAGTGTTCTATCAAGCTATACATATAGAGGACCTCTACCGTGAAGTTGGA
CATTTATTTTATACAGAACTGTTTACAAGAATCTAAAGTGTACGTTGAGT
GGGATAGAGACTCTTAACAAGGGTCTGAAAGAGGTCTCGGAGGATTCGTT
TTAAAGTAGGGCCCTTACTTTGTGATTAAAGAGGGGTGAGGacattttaa
taaaataaatcaaGATTTGAACTTTTCGGattgataaatcagaatagttA
AAAACACCATTCATTTAAACAAATCTCAATGGAACTTTAATCGAAAtcaa
acgggttttttttaacGATATCAAttattgatttttagtttgacagcTTG
TGCCCGCGTGGTTCAATGGTCATGAATGAGGAATTCTACAATAAATTTCT
TTAGCGTCTTTACAtgatttgtttacttttttgaaatcataataaaaatg
tttaaatgtGCAACGAATGTCCGAACCTCGTACGTAATGATTTTACATCG
TGTTCCAACTTTTACTAACATTAAATACAAACTTCAAATCAaggattgga
aaatatatttcatatctATATGACTTTCGTATGGTTACTATGATTACTGA
AAACTAGTAAAGTGAATCAATCAATAATTCATCGAATGTCTTTTTAAAGA
AACGCATAAAGTACaaatgtttttcgtttttttttcacaagtttttgTAT
TATTTGCGGCCTTTATTTTAATTTGCATCACAAAGAGATTGGACTCGAGT
TTAAAAGTTTTGTCGCTgctttgaatttcaaaaagtagTTCTTTATTGCA
AACACTTCACAAAGTAACCAATTTGTCCAAGCGTATGTACTACTAGGCGG
ACCAAAGAAGatcatcattttttattttctcagtGAAAAGTGATCCTGAA
AAATAGGTGAACCAATCATAGGGCCCGATACCCTTTCAGATATAAACTAT
TCAAGTATTTAGCGTTCATGATCAGCATTAGAGCATCAAAGTCCGACCAG
ACTTAAAAAGATAAGCTAAAAGAGCGGACCTAGTCAGTCAACTTCCCGAT
GAGGAAGAATCTTCTCAAACGGACAGAAAAAATTTGAGTGAATTCTCCCC
GTTCGGGAAGTTTTTCCCGGTTTGGTTAGTGGTGTAGACTGTCAATGAGA
GCTCGTCAGTCCTAATGCACTCCTATTTCACAATATTGTTCAAAAAATTC
CTTGAATGCAGTTTTATCGGACAATTCTATGGACTTGATTAAATACCAAC
TACGGATTCGATGATTGATCATTAAGAACATTAATTGCTAACTATTGAAG
TCACTTCAGCTTTTTTTCGTGTCGAGAAAATggttctaggaaaattgccc
ccgagaaaattgccccccggaaaactgcccccggaaaattgccccccgga
aaattgccccctaggaaaactgCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNcagtcagtcagtcagtcagtcagtcagtcagtcagtcagtc
agtcactCAGTCACTCAGTCACTCAGTCACTCAGTCACTCAGTCactcag
tcagtcagtcagtcagtcagtcagtcactCAGTCACTCAGTCACTCAGTC
ACTCAGTCAGGATGTGTAAACAAACTAGAAACTTACCATCTCTGTCTtgg
ctttttaaattttaaggacTTCGACTTTTGGGGACTGGGACAATTTGTCA
CTATTCCTACAATCGAACCCTCGAATAGTTGgaaaaatactgaagttgag
cccattGCGGTCACGTTCGCCTATAGCTTCAATTTTCGCCTTAATTCTGT
TTCTTATTCTAACATTGGaaatttgcattgttttttctttttttctagga
TTTCATGTTTTTCGAGCAATCGGCCAACCAAGACAATCAAATGACAATTA
ACGGTTAAAAGTGCCGGCATCCGAAAAATCTTAAGTAGCAAGTAGTGTGA
CGTAATCTTGTTCTAAGCACATATATGGTAGATTTAGACATACATGTTAT
CACTAATCACTAACCAGAACTAATAGGGAAATTGGAAGAGTCTTATAGTT
TTATTCGGTtttatctttttagaaatcacacaatttaaaaaaaatgattc
gCTAGGATCATGTTTGCTTTTATGTCTTTgtgtgaaatttttattttgaa
atgataattttatttctgatttttgtatattttgattttgggttcaacta
ttttttttgtaattcagataatttttttgtataaataatCGGATCTTGGA
AGATAATATAGGAGTAGTATATAGTAGTTTTTAAACCAATAAAGCTTCCG
GTGTTggatctattcatgatatgcatgacgtaatgttttatacggcaAAA
CCCAAAATGCCCTGGTGTTAACCACtaattttactaattttcaaaattag
ggGAAAGACCCTGTTTTTTTTGGGCCCTTCCGTGTATAAAATATTACCTC
ACGAATATCGCGAATTTTAATCACTTACAATTTCTTGGTGATTCTGCAAA
TATAACCACATCACTACAGCATCATTCGATTTAATTTTTTGGCTCCTCAT
TATTGATTAATTATTATTTTGGTTTAAAGTTTAactaatttgatttaaaa
aatgtaaatcaCATACCGTATATATTTTAGTTCAGTTTGGTCTGCTGGTT
TGTacataataaatatttttagaaaatcttgattcgatttcttgtctttg
aaataaataattactaaaaata

Coding sequence (CDS) from alignment at scaffold_331:537979..547200+

>TCONS_00059804 ID=TCONS_00059804|Name=TCONS_00059804|organism=Clytia hemisphaerica|type=CDS|length=5355bp|location=Sequence derived from alignment at scaffold_331:537979..547200+ (Clytia hemisphaerica)
ATGCAACAACCAGGATATCCACCACCTGGACAACCAGGATATCAGGGGCA
GCCTGGTTACCCCCCTGCTCAGCCTGGCTACCCACCAGCTGGGCAGCCTG
GTTATCCACCACCAGGACAGCCAGGTTATCCACCTGTTATGCAGCAACCA
GGAGGAGCTCCAGGAGGAGAATGGATGCCAATGGTTGCTCAAGCACCACC
AAATTGTCCACCAGGTCTGGAATACCTTACCCAAATTGATCAACTAATTG
TTAAACAGCAAGTTGAATTACTTGAAGcTTTCACTGGGTTTGAAACAGCC
AACAAATACAAGGTCAAAAACTCCCTTGGACAGACTATTTATTTTGCTGC
GGAAGATACTGATTGTTGTACAAGGCAATGCTGTGGACCAGGCCGACCTT
TCGATATGAAAATCATGGATAATTCACAGCGTGAAGTTATTCATTTGGTA
CGTCCCTTGAGATGTACTGGATGTTGTTTCCCGTGTTGTTTACAAGAAAT
TGAAGTCAGCTCACCTCCTGGCACACCTATTGGATACATTACACAACAAT
GGTCGTTGTGTGCACCGAAATTTGAGATTCAAGATGCTCAACATAATCCT
GTATTGTTGATTGAAGGACCTGTCTGTACATTCAACATGTGTGGAGATAT
CGAGTTCAAGGTGCTAGCATTAGACGGATCCAACCAGGTTGGGCGTATTT
CGAAACAATGGGGCGGATTTGCTAAGGAGGCTTTTACGGATGCCGATACC
TTTGGAATCACCTgaATGCAACAACCAGGATATCCACCACCTGGACAACC
AGGATATCAGGGGCAGCCTGGTTACCCCCCTGCTCAGCCTGGCTACCCAC
CAGCTGGGCAGCCTGGTTATCCACCACCAGGACAGCCAGGTTATCCACCT
GTTATGCAGCAACCAGGAGGAGCTCCAGGAGGAGAATGGATGCCAATGGT
TGCTCAAGCACCACCAAATTGTCCACCAGGTCTGGAATACCTTACCCAAA
TTGATCAACTAATTGTTAAACAGCAAGTTGAATTACTTGAAGcTTTCACT
GGGTTTGAAACAGCCAACAAATACAAGGTCAAAAACTCCCTTGGACAGAC
TATTTATTTTGCTGCGGAAGATACTGATTGTTGTACAAGGCAATGCTGTG
GACCAGGCCGACCTTTCGATATGAAAATCATGGATAATTCACAGCGTGAA
GTTATTCATTTGGTACGTCCCTTGAGATGTACTGGATGTTGTTTCCCGTG
TTGTTTACAAGAAATTGAAGTCAGCTCACCTCCTGGCACACCTATTGGAT
ACATTACACAACAATGGTCGTTGTGTGCACCGAAATTTGAGATTCAAGAT
GCTCAACATAATCCTGTATTGTTGATTGAAGGACCTGTCTGTACATTCAA
CATGTGTGGAGATATCGAGTTCAAGGTGCTAGCATTAGACGGATCCAACC
AGGTTGGGCGTATTTCGAAACAATGGGGCGGATTTGCTAAGGAGGCTTTT
ACGGATGCCGATACCTTTGGAATCACCTgaATGCAACAACCAGGATATCC
ACCACCTGGACAACCAGGATATCAGGGGCAGCCTGGTTACCCCCCTGCTC
AGCCTGGCTACCCACCAGCTGGGCAGCCTGGTTATCCACCACCAGGACAG
CCAGGTTATCCACCTGTTATGCAGCAACCAGGAGGAGCTCCAGGAGGAGA
ATGGATGCCAATGGTTGCTCAAGCACCACCAAATTGTCCACCAGGTCTGG
AATACCTTACCCAAATTGATCAACTAATTGTTAAACAGCAAGTTGAATTA
CTTGAAGcTTTCACTGGGTTTGAAACAGCCAACAAATACAAGGTCAAAAA
CTCCCTTGGACAGACTATTTATTTTGCTGCGGAAGATACTGATTGTTGTA
CAAGGCAATGCTGTGGACCAGGCCGACCTTTCGATATGAAAATCATGGAT
AATTCACAGCGTGAAGTTATTCATTTGGTACGTCCCTTGAGATGTACTGG
ATGTTGTTTCCCGTGTTGTTTACAAGAAATTGAAGTCAGCTCACCTCCTG
GCACACCTATTGGATACATTACACAACAATGGTCGTTGTGTGCACCGAAA
TTTGAGATTCAAGATGCTCAACATAATCCTGTATTGTTGATTGAAGGACC
TGTCTGTACATTCAACATGTGTGGAGATATCGAGTTCAAGGTGCTAGCAT
TAGACGGATCCAACCAGGTTGGGCGTATTTCGAAACAATGGGGCGGATTT
GCTAAGGAGGCTTTTACGGATGCCGATACCTTTGGAATCACCTgaATGCA
ACAACCAGGATATCCACCACCTGGACAACCAGGATATCAGGGGCAGCCTG
GTTACCCCCCTGCTCAGCCTGGCTACCCACCAGCTGGGCAGCCTGGTTAT
CCACCACCAGGACAGCCAGGTTATCCACCTGTTATGCAGCAACCAGGAGG
AGCTCCAGGAGGAGAATGGATGCCAATGGTTGCTCAAGCACCACCAAATT
GTCCACCAGGTCTGGAATACCTTACCCAAATTGATCAACTAATTGTTAAA
CAGCAAGTTGAATTACTTGAAGcTTTCACTGGGTTTGAAACAGCCAACAA
ATACAAGGTCAAAAACTCCCTTGGACAGACTATTTATTTTGCTGCGGAAG
ATACTGATTGTTGTACAAGGCAATGCTGTGGACCAGGCCGACCTTTCGAT
ATGAAAATCATGGATAATTCACAGCGTGAAGTTATTCATTTGGTACGTCC
CTTGAGATGTACTGGATGTTGTTTCCCGTGTTGTTTACAAGAAATTGAAG
TCAGCTCACCTCCTGGCACACCTATTGGATACATTACACAACAATGGTCG
TTGTGTGCACCGAAATTTGAGATTCAAGATGCTCAACATAATCCTGTATT
GTTGATTGAAGGACCTGTCTGTACATTCAACATGTGTGGAGATATCGAGT
TCAAGGTGCTAGCATTAGACGGATCCAACCAGGTTGGGCGTATTTCGAAA
CAATGGGGCGGATTTGCTAAGGAGGCTTTTACGGATGCCGATACCTTTGG
AATCACCTgaATGCAACAACCAGGATATCCACCACCTGGACAACCAGGAT
ATCAGGGGCAGCCTGGTTACCCCCCTGCTCAGCCTGGCTACCCACCAGCT
GGGCAGCCTGGTTATCCACCACCAGGACAGCCAGGTTATCCACCTGTTAT
GCAGCAACCAGGAGGAGCTCCAGGAGGAGAATGGATGCCAATGGTTGCTC
AAGCACCACCAAATTGTCCACCAGGTCTGGAATACCTTACCCAAATTGAT
CAACTAATTGTTAAACAGCAAGTTGAATTACTTGAAGcTTTCACTGGGTT
TGAAACAGCCAACAAATACAAGGTCAAAAACTCCCTTGGACAGACTATTT
ATTTTGCTGCGGAAGATACTGATTGTTGTACAAGGCAATGCTGTGGACCA
GGCCGACCTTTCGATATGAAAATCATGGATAATTCACAGCGTGAAGTTAT
TCATTTGGTACGTCCCTTGAGATGTACTGGATGTTGTTTCCCGTGTTGTT
TACAAGAAATTGAAGTCAGCTCACCTCCTGGCACACCTATTGGATACATT
ACACAACAATGGTCGTTGTGTGCACCGAAATTTGAGATTCAAGATGCTCA
ACATAATCCTGTATTGTTGATTGAAGGACCTGTCTGTACATTCAACATGT
GTGGAGATATCGAGTTCAAGGTGCTAGCATTAGACGGATCCAACCAGGTT
GGGCGTATTTCGAAACAATGGGGCGGATTTGCTAAGGAGGCTTTTACGGA
TGCCGATACCTTTGGAATCACCTgaATGCAACAACCAGGATATCCACCAC
CTGGACAACCAGGATATCAGGGGCAGCCTGGTTACCCCCCTGCTCAGCCT
GGCTACCCACCAGCTGGGCAGCCTGGTTATCCACCACCAGGACAGCCAGG
TTATCCACCTGTTATGCAGCAACCAGGAGGAGCTCCAGGAGGAGAATGGA
TGCCAATGGTTGCTCAAGCACCACCAAATTGTCCACCAGGTCTGGAATAC
CTTACCCAAATTGATCAACTAATTGTTAAACAGCAAGTTGAATTACTTGA
AGcTTTCACTGGGTTTGAAACAGCCAACAAATACAAGGTCAAAAACTCCC
TTGGACAGACTATTTATTTTGCTGCGGAAGATACTGATTGTTGTACAAGG
CAATGCTGTGGACCAGGCCGACCTTTCGATATGAAAATCATGGATAATTC
ACAGCGTGAAGTTATTCATTTGGTACGTCCCTTGAGATGTACTGGATGTT
GTTTCCCGTGTTGTTTACAAGAAATTGAAGTCAGCTCACCTCCTGGCACA
CCTATTGGATACATTACACAACAATGGTCGTTGTGTGCACCGAAATTTGA
GATTCAAGATGCTCAACATAATCCTGTATTGTTGATTGAAGGACCTGTCT
GTACATTCAACATGTGTGGAGATATCGAGTTCAAGGTGCTAGCATTAGAC
GGATCCAACCAGGTTGGGCGTATTTCGAAACAATGGGGCGGATTTGCTAA
GGAGGCTTTTACGGATGCCGATACCTTTGGAATCACCTgaATGCAACAAC
CAGGATATCCACCACCTGGACAACCAGGATATCAGGGGCAGCCTGGTTAC
CCCCCTGCTCAGCCTGGCTACCCACCAGCTGGGCAGCCTGGTTATCCACC
ACCAGGACAGCCAGGTTATCCACCTGTTATGCAGCAACCAGGAGGAGCTC
CAGGAGGAGAATGGATGCCAATGGTTGCTCAAGCACCACCAAATTGTCCA
CCAGGTCTGGAATACCTTACCCAAATTGATCAACTAATTGTTAAACAGCA
AGTTGAATTACTTGAAGcTTTCACTGGGTTTGAAACAGCCAACAAATACA
AGGTCAAAAACTCCCTTGGACAGACTATTTATTTTGCTGCGGAAGATACT
GATTGTTGTACAAGGCAATGCTGTGGACCAGGCCGACCTTTCGATATGAA
AATCATGGATAATTCACAGCGTGAAGTTATTCATTTGGTACGTCCCTTGA
GATGTACTGGATGTTGTTTCCCGTGTTGTTTACAAGAAATTGAAGTCAGC
TCACCTCCTGGCACACCTATTGGATACATTACACAACAATGGTCGTTGTG
TGCACCGAAATTTGAGATTCAAGATGCTCAACATAATCCTGTATTGTTGA
TTGAAGGACCTGTCTGTACATTCAACATGTGTGGAGATATCGAGTTCAAG
GTGCTAGCATTAGACGGATCCAACCAGGTTGGGCGTATTTCGAAACAATG
GGGCGGATTTGCTAAGGAGGCTTTTACGGATGCCGATACCTTTGGAATCA
CCTga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037624XLOC_037624Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059804-proteinTCONS_00059804-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059804-exon-scaffold_331-1491911889:537979..538056TCONS_00059804-exon-scaffold_331-1491911889:537979..538056Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:537979..538056TCONS_00059804-exon-scaffold_331-1510915933:537979..538056Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:537979..538056TCONS_00059804-exon-scaffold_331-1575043694:537979..538056Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:538273..538467TCONS_00059804-exon-scaffold_331-1491911889:538273..538467Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:538273..538467TCONS_00059804-exon-scaffold_331-1510915933:538273..538467Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:538273..538467TCONS_00059804-exon-scaffold_331-1575043694:538273..538467Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:538914..539021TCONS_00059804-exon-scaffold_331-1491911889:538914..539021Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:538914..539021TCONS_00059804-exon-scaffold_331-1510915933:538914..539021Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:538914..539021TCONS_00059804-exon-scaffold_331-1575043694:538914..539021Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:539260..539337TCONS_00059804-exon-scaffold_331-1491911889:539260..539337Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:539260..539337TCONS_00059804-exon-scaffold_331-1510915933:539260..539337Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:539260..539337TCONS_00059804-exon-scaffold_331-1575043694:539260..539337Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:539792..539984TCONS_00059804-exon-scaffold_331-1491911889:539792..539984Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:539792..539984TCONS_00059804-exon-scaffold_331-1510915933:539792..539984Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:539792..539984TCONS_00059804-exon-scaffold_331-1575043694:539792..539984Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:540864..540975TCONS_00059804-exon-scaffold_331-1491911889:540864..540975Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:540864..540975TCONS_00059804-exon-scaffold_331-1510915933:540864..540975Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:540864..540975TCONS_00059804-exon-scaffold_331-1575043694:540864..540975Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:541408..541510TCONS_00059804-exon-scaffold_331-1491911889:541408..541510Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:541408..541510TCONS_00059804-exon-scaffold_331-1510915933:541408..541510Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:541408..541510TCONS_00059804-exon-scaffold_331-1575043694:541408..541510Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1491911889:546327..547200TCONS_00059804-exon-scaffold_331-1491911889:546327..547200Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1510915933:546327..547200TCONS_00059804-exon-scaffold_331-1510915933:546327..547200Clytia hemisphaericaexon
TCONS_00059804-exon-scaffold_331-1575043694:546327..547200TCONS_00059804-exon-scaffold_331-1575043694:546327..547200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:537979..547200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6911	6.58413	100.286	95.9812	22.7976	13.4435	12.8846	19.8811	51.2013	52.1359	56.7426	36.9604	120.281	88.409	110.412	124.588	67.8549	71.9217	103.471	81.0776	68.4207	68.0194	23.0741	24.5558	44.825	61.8572	24.7507	23.4509	21.307	18.9829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005552Scramblase
IPR025659Tubby_C-like
Blast
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BLAST of TCONS_00059804 vs. Swiss-Prot (Human)
Match: PLS1 (Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.863e-74
Identity = 123/201 (61.19%), Postives = 149/201 (74.13%), Query Frame = 3 
Query:  261 APGGEWMPMVAQAPPNCPPGLEYLTQIDQLIVKQQVELLEAFTGFETANKYKVKNSLGQTIYFAAEDTDCCTRQCCGPGRPFDMKIMDNSQREVIHLVRPLRCTGCCFPCCLQEIEVSSPPGTPIGYITQQWSLCAPKFEIQDAQHNPVLLIEGPVCTFNMCGDIEFKVLALDGSNQVGRISKQWGGFAKEAFTDADTFGI 863
            A G  WMP   Q P NCPPGLEYL+QIDQ+++ QQ+ELLE  TGFET NKY++KNS GQ +YFAAEDTDCCTR CCGP RPF ++I+DN  +EVI L RPLRC+ CC PCCLQEIE+ +PPG PIGY+ Q W  C PKF IQ+ +   VL I GP    + CGD++F++ +LD    VG+ISK W G  +EAFTDAD FGI
Sbjct:   80 AAGVPWMP-APQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGI 279
The following BLAST results are available for this feature:
BLAST of TCONS_00059804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLS11.863e-7461.19Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR... [more]
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