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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059811 ID=TCONS_00059811|Name=TCONS_00059811|organism=Clytia hemisphaerica|type=transcript|length=1993bp
GTGCTTTCATATGCTAGGTATAATTAATAATTAGCTTTAATTTTGAAGTA
CGGGCGACAAGACTTCAAATTGATTATTAGCGAAAaagaacgaagaagaa
caaGATAGGAAGAGGTGAGCGAGAATCAACaaagaaaaggagaaaaagTT
AATCAACAAACCAGCCATGGCAAAACATCACAAGATCACAGTGATCGTAG
TCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATGTCTACAAACTTTTA
ACACAAACTGAAGAAGACATCAAACAGTTCATGTGTCACCATGTCAAACA
TGACGACCACAAGGATATGTTACGCCGGCAGAAACATCACCGTACCGAAG
CTGTCCGATCACACACCATCGATGAAGAAGATGAATCATTCGAAGACAAA
GTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCTCACTACCAGCACAA
ATTGAAAGCTGAGCATCGATGTCGACATCATATCACAGTTGACCAGATCC
GTGGAATGAAGTTCCTATCCAAACTTGGTATCATTTTCTCCTTGGTATCC
ATTGTAGCAACATTGATCGCCTTTGGATCCATCAGATCTGTTGAAACACC
AAATGCACGTTTCTTCTTGATCCCATACATCTTTGCACACACCTTGTTGA
TTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGGAATTGGTCCACAAA
TTACCAGTCCTTTACATCGTCATGGTGGTTGTATCCTCCATCATGCTTAT
CTCTTTCATTTCATTGGTCAAGATTTATTACAATGCATTATCCAAAGCTG
GCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAGCATTTGATTACGCG
ATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGAACAATGATGATGAA
AACACCAAAATAACATTGTTGCTTTTTTCCACGCCATTCTTAATATAAAC
CAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAAATCAGCTTTTCTTT
AgctgttttttttggaatttgagAGTgtgattgttcttaatttgttctta
aagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGTCTCAACACT
GATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTAGCTCGGTAT
GAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAATTTCGCACT
GATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTAAGTgcaatt
tatttaatttaaacTTTATAAATCATTTTATATTCTTCATAgcactgaaa
aataaatttaaaaaacttagtTCTTGGAGATTTGCATATTATTTAAGAAG
GATTTATATtcgtaaaaataaaatttcaactgTACTCTTTCAAACTGTAT
CgaactttttgtattttctaaaaATGCTTTCAATTAAAAGTTAATGCCAA
ACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTACTGTTGTCTGAGTA
AACGATGTCAAAAAATCGAGTCtccttcaaaattatttttgagcaaacca
aaaaattgaatttttgaaaaaagatttagtcACGATAAatccgggggggg
tacttaggcaaatggagggtacggtatgtgccgtcANattgttcttaatt
tgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACCGTAGTC
TCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGAATTTAG
CTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCTTTGAAT
TTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCACTTTAA
GTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCTTCATAg
cactgaaaaataaatttaaaaatcttagtTCTTGGAGATTTGCATATTAT
TTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgtat Run BLAST on NCBI protein sequence of TCONS_00059811-protein >TCONS_00059811-protein ID=TCONS_00059811-protein|Name=TCONS_00059811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MAKHHKITVIVVLLFTFLFAACNVYKLLTQTEEDIKQFMCHHVKHDDHKD
MLRRQKHHRTEAVRSHTIDEEDESFEDKVRDGLDKKIKESHYQHKLKAEH
RCRHHITVDQIRGMKFLSKLGIIFSLVSIVATLIAFGSIRSVETPNARFF
LIPYIFAHTLLIAFEIYACIRTQELVHKLPVLYIVMVVVSSIMLISFISL
VKIYYNALSKAGRKGGSVPKAKEAFDYAIMPEEKDASEA Run BLAST on NCBI transcript from alignment at scaffold_331:653124..656086+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059811 ID=TCONS_00059811|Name=TCONS_00059811|organism=Clytia hemisphaerica|type=transcript|length=2963bp|location=Sequence derived from alignment at scaffold_331:653124..656086+ (Clytia hemisphaerica)
GTGCTTTCATATGCTAGGTATAATTAATAATTAGCTTTAATGTGAGTTGT
TTTCTAATTGAAGGAATACATCAGCAGGGCATTAGGATCGAGATACCTTT
TGTAGATAAATATTGATATTGGTATTACTTACTTTGACACTAAAGAATCC
GTAATTTAAAAACTCATGTATGTAGATTATgtttagaaaaaaacgaaatc
aaaatTCAGACGTTTAGACTTTTAGATGAACAGCCAACTATTCTTATAGG
TAAGTAAACTAGAGAGTTGGACAACTTTCTCATTGGAAATCAACTTGGTT
AGCTCTTGGTCGATCTTAACAAGTCACCGAGATATGAGGTGTCTAGGGCA
TTACATACAGGGTTTACACTTTTAAGCTTTTACCAACGAAAACCCCCCTT
CTCACACACCCGGTAGGATTTTCTCatccagtgggggtaaaaataacgga
ctgaaactcagtgttgatatctttttttggctgggaatttaaattctttt
gttttcaagtcagaaatttcagtgggggggggggatacGAGAAATTACAT
CCCTGCcttacagccccggtggaacttcatttgaaatgaaatattgcatc
acaaaatattttaagacaagtttttagttttcaagatatCAAAAACCTAA
TGAATACTCTCTCATTTAAGAATCCTCAAATAAACAATGAGAAAAATTCT
AACCTCATAATTCAAAAAATAGAAACCCTGCTGTTAGTAACCAATCTTAA
AAAAGGGTACCTGTTTGAAACAGACCAATCAGAAACAAGCTATGAATAAT
TCAAGTTTGAAGTGAACAGTAAAGATCCTGTTAGATATTGCTTTATTATC
CATCCCTTTCATTCATTATATTCAAAATTCACCAtggagtacacatcaaa
acaaatctaattttagaaaatgagatatcaaaaattaatcaagaagaaat
tttttttctcactttttcgctgaatatgtaaaaaatttcaatccTTTTCT
TTCGTTAACAGTTTGAAGTACGGGCGACAAGACTTCAAATTGATTATTAG
CGAAAaagaacgaagaagaacaaGATAGGAAGAGGTGAGCGAGAATCAAC
aaagaaaaggagaaaaagTTAATCAACAAACCAGCCATGGCAAAACATCA
CAAGATCACAGTGATCGTAGTCCTCCTCTTTACCTTTCTGTTCGCAGCAT
GCAATGTCTACAAACTTTTAACACAAACTGAAGAAGACATCAAACAGTTC
ATGTGTCACCATGTCAAACATGACGACCACAAGGATATGTTACGCCGGCA
GAAACATCACCGTACCGAAGCTGTCCGATCACACACCATCGATGAAGAAG
ATGAATCATTCGAAGACAAAGTTCGAGATGGTTTGGACAAGAAAATCAAG
GAATCTCACTACCAGCACAAATTGAAAGCTGAGCATCGATGTCGACATCA
TATCACAGTTGACCAGATCCGTGGAATGAAGTTCCTATCCAAACTTGGTA
TCATTTTCTCCTTGGTATCCATTGTAGCAACATTGATCGCCTTTGGATCC
ATCAGATCTGTTGAAACACCAAATGCACGTTTCTTCTTGATCCCATACAT
CTTTGCACACACCTTGTTGATTGCTTTTGAAATCTACGCTTGCATCCGTA
CCCAGGAATTGGTCCACAAATTACCAGTCCTTTACATCGTCATGGTGGTT
GTATCCTCCATCATGCTTATCTCTTTCATTTCATTGGTCAAGATTTATTA
CAATGCATTATCCAAAGCTGGCCGCAAAGGCGGATCCGTCCCCAAAGCAA
AAGAAGCATTTGATTACGCGATCATGCCTGAGGAAAAAGACGCATCAGAA
GCCTGAACAATGATGATGAAAACACCAAAATAACATTGTTGCTTTTTTCC
ACGCCATTCTTAATATAAACCAGGTGCCAGTAAATTTTGGATATAAAGGG
CTTTAAATCAGCTTTTCTTTAgctgttttttttggaatttgagAGTgtga
ttgttcttaatttgttcttaaagattTTCTTCTGATTGTTTAAACTGATA
AAAACCGTAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGT
GGTAGAATTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCA
ATCCCTTTGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGAC
AAAGCACTTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTTA
TATTCTTCATAgcactgaaaaataaatttaaaaaacttagtTCTTGGAGA
TTTGCATATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaac
tgTACTCTTTCAAACTGTATCgaactttttgtattttctaaaaATGCTTT
CAATTAAAAGTTAATGCCAAACATTTTATAATTCCATTTGAAAAGAGTTC
CTTTTACTGTTGTCTGAGTAAACGATGTCAAAAAATCGAGTCtccttcaa
aattatttttgagcaaaccaaaaaattgaatttttgaaaaaagatttagt
cACGATAAatccggggggggtacttaggcaaatggagggtacggtatgtg
ccgtcANattgttcttaatttgttcttaaagattTTCTTCTGATTGTTTA
AACTGATAAAAACCGTAGTCTCAACACTGATCTGCTAATGTTAGATAAAC
GTTTTAGTGGTAGAATTTAGCTCGGTATGAATACAAACCCAAGAATTTTA
GTATTCCAATCCCTTTGAATTTCGCACTGATCGCACTTTTCTATTAAATG
TGTATGACAAAGCACTTTAAGTgcaatttatttaatttaaacTTTATAAA
TCATTTTATATTCTTCATAgcactgaaaaataaatttaaaaatcttagtT
CTTGGAGATTTGCATATTATTTAAGAAGGATTTATATtcgtaaaaataaa
atttcaactgtat Coding sequence (CDS) from alignment at scaffold_331:653124..656086+ >TCONS_00059811 ID=TCONS_00059811|Name=TCONS_00059811|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_331:653124..656086+ (Clytia hemisphaerica)
ATGGCAAAACATCACAAGATCACAGTGATCGTAGTCCTCCTCTTTACCTT
TCTGTTCGCAGCATGCAATGTCTACAAACTTTTAACACAAACTGAAGAAG
ACATCAAACAGTTCATGTGTCACCATGTCAAACATGACGACCACAAGGAT
ATGTTACGCCGGCAGAAACATCACCGTACCGAAGCTGTCCGATCACACAC
CATCGATGAAGAAGATGAATCATTCGAAGACAAAGTTCGAGATGGTTTGG
ACAAGAAAATCAAGGAATCTCACTACCAGCACAAATTGAAAGCTGAGCAT
CGATGTCGACATCATATCACAGTTGACCAGATCCGTGGAATGAAGTTCCT
ATCCAAACTTGGTATCATTTTCTCCTTGGTATCCATTGTAGCAACATTGA
TCGCCTTTGGATCCATCAGATCTGTTGAAACACCAAATGCACGTTTCTTC
TTGATCCCATACATCTTTGCACACACCTTGTTGATTGCTTTTGAAATCTA
CGCTTGCATCCGTACCCAGGAATTGGTCCACAAATTACCAGTCCTTTACA
TCGTCATGGTGGTTGTATCCTCCATCATGCTTATCTCTTTCATTTCATTG
GTCAAGATTTATTACAATGCATTATCCAAAGCTGGCCGCAAAGGCGGATC
CGTCCCCAAAGCAAAAGAAGCATTTGATTACGCGATCATGCCTGAGGAAA
AAGACGCATCAGAAGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059811-exon-scaffold_331-1491911889:653124..653164 | TCONS_00059811-exon-scaffold_331-1491911889:653124..653164 | Clytia hemisphaerica | exon |
| TCONS_00059811-exon-scaffold_331-1510915933:653124..653164 | TCONS_00059811-exon-scaffold_331-1510915933:653124..653164 | Clytia hemisphaerica | exon |
| TCONS_00059811-exon-scaffold_331-1575043694:653124..653164 | TCONS_00059811-exon-scaffold_331-1575043694:653124..653164 | Clytia hemisphaerica | exon |
| TCONS_00059811-exon-scaffold_331-1491911889:654135..656086 | TCONS_00059811-exon-scaffold_331-1491911889:654135..656086 | Clytia hemisphaerica | exon |
| TCONS_00059811-exon-scaffold_331-1510915933:654135..656086 | TCONS_00059811-exon-scaffold_331-1510915933:654135..656086 | Clytia hemisphaerica | exon |
| TCONS_00059811-exon-scaffold_331-1575043694:654135..656086 | TCONS_00059811-exon-scaffold_331-1575043694:654135..656086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_331 | supercontig | scaffold_331:653124..656086 + |
Blast
The following BLAST results are available for this feature:
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