|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059812 ID=TCONS_00059812|Name=TCONS_00059812|organism=Clytia hemisphaerica|type=transcript|length=1957bp
TTAAGTTTGAAGTACGGGCGACAAGACTTCAAATTGATTATTAGCGAAAa
agaacgaagaagaacaaGATAGGAAGAGGTGAGCGAGAATCAACaaagaa
aaggagaaaaagTTAATCAACAAACCAGCCATGGCAAAACATCACAAGAT
CACAGTGATCGTAGTCCTCCTCTTTACCTTTCTGTTCGCAGCATGCAATG
TCTACAAACTTTTAACACAAACTGAAGAAGACATCAAACAGTTCATGTGT
CACCATGTCAAACATGACGACCACAAGGATATGTTACGCCGGCAGAAACA
TCACCGTACCGAAGCTGTCCGATCACACACCATCGATGAAGAAGATGAAT
CATTCGAAGACAAAGTTCGAGATGGTTTGGACAAGAAAATCAAGGAATCT
CACTACCAGCACAAATTGAAAGCTGAGCATCGATGTCGACATCATATCAC
AGTTGACCAGATCCGTGGAATGAAGTTCCTATCCAAACTTGGTATCATTT
TCTCCTTGGTATCCATTGTAGCAACATTGATCGCCTTTGGATCCATCAGA
TCTGTTGAAACACCAAATGCACGTTTCTTCTTGATCCCATACATCTTTGC
ACACACCTTGTTGATTGCTTTTGAAATCTACGCTTGCATCCGTACCCAGG
AATTGGTCCACAAATTACCAGTCCTTTACATCGTCATGGTGGTTGTATCC
TCCATCATGCTTATCTCTTTCATTTCATTGGTCAAGATTTATTACAATGC
ATTATCCAAAGCTGGCCGCAAAGGCGGATCCGTCCCCAAAGCAAAAGAAG
CATTTGATTACGCGATCATGCCTGAGGAAAAAGACGCATCAGAAGCCTGA
ACAATGATGATGAAAACACCAAAATAACATTGTTGCTTTTTTCCACGCCA
TTCTTAATATAAACCAGGTGCCAGTAAATTTTGGATATAAAGGGCTTTAA
ATCAGCTTTTCTTTAgctgttttttttggaatttgagAGTgtgattgttc
ttaatttgttcttaaagattTTCTTCTGATTGTTTAAACTGATAAAAACC
GTAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTAGTGGTAGA
ATTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTCCAATCCCT
TTGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATGACAAAGCA
CTTTAAGTgcaatttatttaatttaaacTTTATAAATCATTTTATATTCT
TCATAgcactgaaaaataaatttaaaaaacttagtTCTTGGAGATTTGCA
TATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttcaactgTACT
CTTTCAAACTGTATCgaactttttgtattttctaaaaATGCTTTCAATTA
AAAGTTAATGCCAAACATTTTATAATTCCATTTGAAAAGAGTTCCTTTTA
CTGTTGTCTGAGTAAACGATGTCAAAAAATCGAGTCtccttcaaaattat
ttttgagcaaaccaaaaaattgaatttttgaaaaaagatttagtcACGAT
AAatccggggggggtacttaggcaaatggagggtacggtatgtgccgtcA
NattgttcttaatttgttcttaaagattTTCTTCTGATTGTTTAAACTGA
TAAAAACCGTAGTCTCAACACTGATCTGCTAATGTTAGATAAACGTTTTA
GTGGTAGAATTTAGCTCGGTATGAATACAAACCCAAGAATTTTAGTATTC
CAATCCCTTTGAATTTCGCACTGATCGCACTTTTCTATTAAATGTGTATG
ACAAAGCACTTTAAGTgcaatttatttaatttaaacTTTATAAATCATTT
TATATTCTTCATAgcactgaaaaataaatttaaaaatcttagtTCTTGGA
GATTTGCATATTATTTAAGAAGGATTTATATtcgtaaaaataaaatttca
actgtat Run BLAST on NCBI transcript from alignment at scaffold_331:653160..656086+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059812 ID=TCONS_00059812|Name=TCONS_00059812|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at scaffold_331:653160..656086+ (Clytia hemisphaerica)
TTAATGTGAGTTGTTTTCTAATTGAAGGAATACATCAGCAGGGCATTAGG
ATCGAGATACCTTTTGTAGATAAATATTGATATTGGTATTACTTACTTTG
ACACTAAAGAATCCGTAATTTAAAAACTCATGTATGTAGATTATgtttag
aaaaaaacgaaatcaaaatTCAGACGTTTAGACTTTTAGATGAACAGCCA
ACTATTCTTATAGGTAAGTAAACTAGAGAGTTGGACAACTTTCTCATTGG
AAATCAACTTGGTTAGCTCTTGGTCGATCTTAACAAGTCACCGAGATATG
AGGTGTCTAGGGCATTACATACAGGGTTTACACTTTTAAGCTTTTACCAA
CGAAAACCCCCCTTCTCACACACCCGGTAGGATTTTCTCatccagtgggg
gtaaaaataacggactgaaactcagtgttgatatctttttttggctggga
atttaaattcttttgttttcaagtcagaaatttcagtgggggggggggat
acGAGAAATTACATCCCTGCcttacagccccggtggaacttcatttgaaa
tgaaatattgcatcacaaaatattttaagacaagtttttagttttcaaga
tatCAAAAACCTAATGAATACTCTCTCATTTAAGAATCCTCAAATAAACA
ATGAGAAAAATTCTAACCTCATAATTCAAAAAATAGAAACCCTGCTGTTA
GTAACCAATCTTAAAAAAGGGTACCTGTTTGAAACAGACCAATCAGAAAC
AAGCTATGAATAATTCAAGTTTGAAGTGAACAGTAAAGATCCTGTTAGAT
ATTGCTTTATTATCCATCCCTTTCATTCATTATATTCAAAATTCACCAtg
gagtacacatcaaaacaaatctaattttagaaaatgagatatcaaaaatt
aatcaagaagaaattttttttctcactttttcgctgaatatgtaaaaaat
ttcaatccTTTTCTTTCGTTAACAGTTTGAAGTACGGGCGACAAGACTTC
AAATTGATTATTAGCGAAAaagaacgaagaagaacaaGATAGGAAGAGGT
GAGCGAGAATCAACaaagaaaaggagaaaaagTTAATCAACAAACCAGCC
ATGGCAAAACATCACAAGATCACAGTGATCGTAGTCCTCCTCTTTACCTT
TCTGTTCGCAGCATGCAATGTCTACAAACTTTTAACACAAACTGAAGAAG
ACATCAAACAGTTCATGTGTCACCATGTCAAACATGACGACCACAAGGAT
ATGTTACGCCGGCAGAAACATCACCGTACCGAAGCTGTCCGATCACACAC
CATCGATGAAGAAGATGAATCATTCGAAGACAAAGTTCGAGATGGTTTGG
ACAAGAAAATCAAGGAATCTCACTACCAGCACAAATTGAAAGCTGAGCAT
CGATGTCGACATCATATCACAGTTGACCAGATCCGTGGAATGAAGTTCCT
ATCCAAACTTGGTATCATTTTCTCCTTGGTATCCATTGTAGCAACATTGA
TCGCCTTTGGATCCATCAGATCTGTTGAAACACCAAATGCACGTTTCTTC
TTGATCCCATACATCTTTGCACACACCTTGTTGATTGCTTTTGAAATCTA
CGCTTGCATCCGTACCCAGGAATTGGTCCACAAATTACCAGTCCTTTACA
TCGTCATGGTGGTTGTATCCTCCATCATGCTTATCTCTTTCATTTCATTG
GTCAAGATTTATTACAATGCATTATCCAAAGCTGGCCGCAAAGGCGGATC
CGTCCCCAAAGCAAAAGAAGCATTTGATTACGCGATCATGCCTGAGGAAA
AAGACGCATCAGAAGCCTGAACAATGATGATGAAAACACCAAAATAACAT
TGTTGCTTTTTTCCACGCCATTCTTAATATAAACCAGGTGCCAGTAAATT
TTGGATATAAAGGGCTTTAAATCAGCTTTTCTTTAgctgttttttttgga
atttgagAGTgtgattgttcttaatttgttcttaaagattTTCTTCTGAT
TGTTTAAACTGATAAAAACCGTAGTCTCAACACTGATCTGCTAATGTTAG
ATAAACGTTTTAGTGGTAGAATTTAGCTCGGTATGAATACAAACCCAAGA
ATTTTAGTATTCCAATCCCTTTGAATTTCGCACTGATCGCACTTTTCTAT
TAAATGTGTATGACAAAGCACTTTAAGTgcaatttatttaatttaaacTT
TATAAATCATTTTATATTCTTCATAgcactgaaaaataaatttaaaaaac
ttagtTCTTGGAGATTTGCATATTATTTAAGAAGGATTTATATtcgtaaa
aataaaatttcaactgTACTCTTTCAAACTGTATCgaactttttgtattt
tctaaaaATGCTTTCAATTAAAAGTTAATGCCAAACATTTTATAATTCCA
TTTGAAAAGAGTTCCTTTTACTGTTGTCTGAGTAAACGATGTCAAAAAAT
CGAGTCtccttcaaaattatttttgagcaaaccaaaaaattgaatttttg
aaaaaagatttagtcACGATAAatccggggggggtacttaggcaaatgga
gggtacggtatgtgccgtcANattgttcttaatttgttcttaaagattTT
CTTCTGATTGTTTAAACTGATAAAAACCGTAGTCTCAACACTGATCTGCT
AATGTTAGATAAACGTTTTAGTGGTAGAATTTAGCTCGGTATGAATACAA
ACCCAAGAATTTTAGTATTCCAATCCCTTTGAATTTCGCACTGATCGCAC
TTTTCTATTAAATGTGTATGACAAAGCACTTTAAGTgcaatttatttaat
ttaaacTTTATAAATCATTTTATATTCTTCATAgcactgaaaaataaatt
taaaaatcttagtTCTTGGAGATTTGCATATTATTTAAGAAGGATTTATA
Ttcgtaaaaataaaatttcaactgtat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059812-exon-scaffold_331-1491911889:653160..653162 | TCONS_00059812-exon-scaffold_331-1491911889:653160..653162 | Clytia hemisphaerica | exon |
| TCONS_00059812-exon-scaffold_331-1510915933:653160..653162 | TCONS_00059812-exon-scaffold_331-1510915933:653160..653162 | Clytia hemisphaerica | exon |
| TCONS_00059812-exon-scaffold_331-1575043694:653160..653162 | TCONS_00059812-exon-scaffold_331-1575043694:653160..653162 | Clytia hemisphaerica | exon |
| TCONS_00059812-exon-scaffold_331-1491911889:654133..656086 | TCONS_00059812-exon-scaffold_331-1491911889:654133..656086 | Clytia hemisphaerica | exon |
| TCONS_00059812-exon-scaffold_331-1510915933:654133..656086 | TCONS_00059812-exon-scaffold_331-1510915933:654133..656086 | Clytia hemisphaerica | exon |
| TCONS_00059812-exon-scaffold_331-1575043694:654133..656086 | TCONS_00059812-exon-scaffold_331-1575043694:654133..656086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:653160..656086 + |
Blast
The following BLAST results are available for this feature:
|
