TCONS_00059815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059815
Unique NameTCONS_00059815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059815 ID=TCONS_00059815|Name=TCONS_00059815|organism=Clytia hemisphaerica|type=transcript|length=2723bp
TTGATAACCAAAAAAAGGAACActgaaaagtttttatttgttGTACCTTT
CTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGactattttacaaaatatta
tcACAAAATTATCTATTCCGTAATAATAACAACACAGTGTCTGGTTCAGG
GTATGACAACCTTTTTCACAGACCAACTGGGACCCCTTCTCATCAAATAA
ACCAAACCTCGCTTCAAAATATTATTCCATTTGTCCTATCCCctctgaat
tttctgacttgaaaaaaatggattttaaacATAGTGATTTAAACCCCCGG
CCATAAAAACATATGGGAatatatcaatccccatcgagtttcagttcgtt
atttttacccccactggctagAAAactcctaccgggtctgtgagaaggcg
TGTTGTATGAGGAAAATCAGGCTGTTATCTACTGTCGATGAAAAGTATAT
ACTCCCGATATCAAATTGCTCAAATTACACTCTCAAAATACACTCCTCTA
CTCATAAAAGGAGCTACAAACCAACATTGCTAAAATAGTAGGGAGAAATT
AAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCAAAAGCAGCtattttcc
acttttttcactttttgaagcttgatatctcgagttaggtagaGAAATCA
Cccatactcgcaatatatctctaatcttaatttttttagagctttccaaa
aatatacaacaggtctctcttttctcaagctaaaatatttattaaatttt
gaccctatgatttttgcctgggactgtcatatttgtccgaaaatcacacc
aaaatatccaaaaaaaattggcacctatgttattttgattcccttacctt
tccaaaaaatgtaaaacaagtgctttgaccgaGAGGAAGTTGTGACTTGG
AttgtgaagaaaaaaatagatGTACTTTAgccatttctaaaaaatctaaa
atttcgttttttcaaaaaatctaaaattccgcaaaaataatcaaaaagta
TGAATGTTACGATATTTAAACTACGGAAGGCAAAACATTTTTCAGCCTTG
AGCAAAATGAGAGAAATATCTTCGTTACTTGTTAACACATCAACTGTCAA
TAGCATCTCTTTCAGCGATAAGTGTAAACGctttgctttcttttttttcc
tatTTGTAGTgtctaaatttgaaataaaaatagtgTTTTAAGACACCACT
GAATAACCTATTGTTCAATTTACACAATTTCAATAATGCACCCCAAATCT
ACCAAGTATTTAATTTGTAAGTGGATGAGAAATAAAGTCATTTTAAGCTG
AATGTAacatattttttggaatttaacTAAATATCTCCTCAGGAACATAT
TCAGTAGTTGTGGTCGTGCttgttgttgtagttgtaggtgtggttgttgt
tgttgtagttgtagGTGTGGTTGttgtggtcgttgttgttgtagttgtag
gtgtggtcgttgttgtagttggaGTGGTCGTTGTGGTTGTAGGAGTGGTC
GTGGTAGTTGTAGGTGTGGTCGTTGTAGGTGTGGTCGTTGTAGTTGTAGG
TGTGGTCGTTGTCGTTTTTGTTGTAGGAGTGGAAGTTGTTGTAGTTGTAG
AAGTGGGAGTGGTCGTTGTAGTAGTTTGAGTGGTCGTTGTAGTAGTttga
gtggtcgttgttgttgtaggCCTGGTCGTtggagtggtcgttgtagttGT
GGTCGTTTTCTTTATCAAACACTCGTCATTTCGACAATACCTAGCGTAGT
AACAATATTGATTGCAATAGTCTGCCACAATTCTATCTCGATAAAGCCCA
CGGTCAATGTAACGAGAATTAGGACCTGTCCAGCTCCATTTACATAAGCA
TTCACCAGTAGTCAAACATTGACCTTTACCAAACAAATGACATTTAACGT
TGCATTTCTTTTTCGGTTTCGGCGTAACCACGCTTACACATTTAGGGTTT
CGATACCACCTGTTGTAGTGACAGGATGTCGTACAATAATCAGCTGTGAT
GCGGTTTCGATTCGTACCTTTGTTAACATATTGTGAATTAGGACCCGTAC
ATTTCCATCTGCATAAGCAGCGACCGTTCGGTAAACACCGGCCGTACGCT
TTATTGTTTTTTTCGCATCTAGAATGACATTTGGTTGATGGAGCTTTGGT
TGTTGTCGTTGTagtggtggtcgttgtcgtCGTGGGTTTTGAAGTTGTCG
AAAGAAAGGGTGTACAGACACGTGACCACGAAGGCGTGTAGTGACATGGT
ACTCGACAATGATCTGCTTTAACTCTCTTATCTAGTGACCCTCCAGTGAG
AGATACTGCATTAGGTCCAGTCCATCCCCACCAACATAGGCAACGACCAT
CAGGTTGACAGACACCAGTACCTGGTGTAGGATGCTCACAGCGTTGGTCG
CAGTGTCTCCTGACTCTGCCTCGATGACTGCCAACAACTTGACGTGTTCT
ATATCTCCTTGACGAGTGACCATAGCTATGGTATCTTGCCAAAACTATAC
CAATGCATAATGCAAAGATAATTGTGATTAAGGTCGACTggttcattttt
gaaatcagcCACGACAATGTCTTGATTTAAAGtgacaagtaaaaaaaatt
ctgaattcTCCCTTTAAAATCCAACAGTTTTGTAAACCGCTTGTAGTTCT
TGTGAACCTCTTGTGAACCTTCTTTTCAGCTAGTCAAATACGGAAATGaa
gtgattttgaaaaatgtccaaat
Run BLAST on NCBI

transcript from alignment at scaffold_331:669273..672820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059815 ID=TCONS_00059815|Name=TCONS_00059815|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_331:669273..672820+ (Clytia hemisphaerica)
TTGATAACCAAAAAAAGGAACActgaaaagtttttatttgttGTACCTTT
CTTTTCAAAGAGAAAGTCGCTCTAAGTAAGGactattttacaaaatatta
tcACAAAATTATCTATTCCGTAATAATAACAACACAGTGTCTGGTTCAGG
GTATGACAACCTTTTTCACAGACCAACTGGGACCCCTTCTCATCAAATAA
ACCAAACCTCGCTTCAAAATATTATTCCATTTGTCCTATCCCctctgaat
tttctgacttgaaaaaaatggattttaaacATAGTGATTTAAACCCCCGG
CCATAAAAACATATGGGAatatatcaatccccatcgagtttcagttcgtt
atttttacccccactggctagAAAactcctaccgggtctgtgagaaggcg
TGTTGTATGAGGAAAATCAGGCTGTTATCTACTGTCGATGAAAAGTATAT
ACTCCCGATATCAAATTGCTCAAATTACACTCTCAAAATACACTCCTCTA
CTCATAAAAGGAGCTACAAACCAACATTGCTAAAATAGTAGGGAGAAATT
AAGCAATTAAAAATAGTGTTGTTTTGTTCAGCCAAAAGCAGCtattttcc
acttttttcactttttgaagcttgatatctcgagttaggtagaGAAATCA
Cccatactcgcaatatatctctaatcttaatttttttagagctttccaaa
aatatacaacaggtctctcttttctcaagctaaaatatttattaaatttt
gaccctatgatttttgcctgggactgtcatatttgtccgaaaatcacacc
aaaatatccaaaaaaaattggcacctatgttattttgattcccttacctt
tccaaaaaatgtaaaacaagtgctttgaccgaGAGGAAGTTGTGACTTGG
AttgtgaagaaaaaaatagatGTACTTTAgccatttctaaaaaatctaaa
atttcgttttttcaaaaaatctaaaattccgcaaaaataatcaaaaagta
TGAATGTTACGATATTTAAACTACGGAAGGCAAAACATTTTTCAGCCTTG
AGCAAAATGAGAGAAATATCTTCGTTACTTGTTAACACATCAACTGTCAA
TAGCATCTCTTTCAGCGATAAGTGTAAACGctttgctttcttttttttcc
tatTTGTAGTgtctaaatttgaaataaaaatagtgTTTTAAGACACCACT
GAATAACCTATTGTTCAATTTACACAATTTCAATAATGCACCCCAAATCT
ACCAAGTATTTAATTTGTAAGTGGATGAGAAATAAAGTCATTTTAAGCTG
AATGTAacatattttttggaatttaacTAAATATCTCCTCAGGAACATAT
TCAGTAGTTGTGGTCGTGCttgttgttgtagttgtagGTGTGGTCGTTGT
GGTTGTAGGAGTGGTCGttgtggtcgttgttgtagtcGGAGTGGTTGTTG
TGGTTGTAGGAGTGGTCGTTTTCGTTGTTgtaggagtggtcgttgtagtA
GTTGGAGTAGTCGTTGTCGTTGTAGGAGTGGTCATTGTAGTTGTAGGTGT
GTTCTTTGTTGTAGTTGTAGTTGTAggtgtggttgttgttgttggagtgg
tcgttgtggttgtaggagtggtcgttgtagttgtaggagtggtcgttgta
gtagttggagtggtcgttgttgttgttgtaggagtggtcgttgtaggtgt
ggtcgttgttgtagttggagtggtcgttgtggttgtaggagtggtcgttg
tagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtagtt
ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTAGT
CGTTGTCGTTgtaggagtggtcgttgtagttgtagttgtaggagtggtcg
ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagtA
GTTGTAGTTGTAggtgtggttgttgttgttgtagttgtaggtgtggttgt
tgttgttgtaggaGTGGTCGTGGTAGTAGTTGGAGTAGTCGTTGTAGTAG
TTGGAGTAGTCGTTGTCGTTgtaggagtggtcgttgtagttgtagttata
ggagtggtcgttgtagtagttggagtggtcgttgtagtAGTTGGAGTGGT
CGTAGTAGTTGTAGGTGTGGTCGTAGTTGTAGGAGTGGTCGCTGTAGTAG
TTGTAGTTGTAggtgtggttgttgttgttgtagttgtagGTGTGGTTGtt
gtggtcgttgttgttgtagttgtaggtgtggtcgttgttgtagttggaGT
GGTCGTTGTGGTTGTAGGAGTGGTCGTGGTAGTTGTAGGTGTGGTCGTTG
TAGGTGTGGTCGTTGTAGTTGTAGGTGTGGTCGTTGTCGTTTTTGTTGTA
GGAGTGGAAGTTGTTGTAGTTGTAGAAGTGGGAGTGGTCGTTGTAGTAGT
TTGAGTGGTCGTTGTAGTAGTttgagtggtcgttgttgttgtaggCCTGG
TCGTtggagtggtcgttgtagttGTGGTCGTTTTCTTTATCAAACACTCG
TCATTTCGACAATACCTAGCGTAGTAACAATATTGATTGCAATAGTCTGC
CACAATTCTATCTCGATAAAGCCCACGGTCAATGTAACGAGAATTAGGAC
CTGTCCAGCTCCATTTACATAAGCATTCACCAGTAGTCAAACATTGACCT
TTACCAAACAAATGACATTTAACGTTGCATTTCTTTTTCGGTTTCGGCGT
AACCACGCTTACACATTTAGGGTTTCGATACCACCTGTTGTAGTGACAGG
ATGTCGTACAATAATCAGCTGTGATGCGGTTTCGATTCGTACCTTTGTTA
ACATATTGTGAATTAGGACCCGTACATTTCCATCTGCATAAGCAGCGACC
GTTCGGTAAACACCGGCCGTACGCTTTATTGTTTTTTTCGCATCTAGAAT
GACATTTGGTTGATGGAGCTTTGGTTGTTGTCGTTGTagtggtggtcgtt
gtcgtCGTGGGTTTTGAAGTTGTCGAAAGAAAGGGTGTACAGACACGTGA
CCACGAAGGCGTGTAGTGACATGGTACTCGACAATGATCTGCTTTAACTC
TCTTATCTAGTGACCCTCCAGTGAGAGATACTGCATTAGGTCCAGTCCAT
CCCCACCAACATAGGCAACGACCATCAGGTTGACAGACACCAGTACCTGG
TGTAGGATGCTCACAGCGTTGGTCGCAGTGTCTCCTGACTCTGCCTCGAT
GACTGCCAACAACTTGACGTGTTCTATATCTCCTTGACGAGTGACCATAG
CTATGGTATCTTGCCAAAACTATACCAATGCATAATGCAAAGATAATTGT
GATTAAGGTCGACTggttcatttttgaaatcagcCACGACAATGTCTTGA
TTTAAAGtgacaagtaaaaaaaattctgaattcTCCCTTTAAAATCCAAC
AGTTTTGTAAACCGCTTGTAGTTCTTGTGAACCTCTTGTGAACCTTCTTT
TCAGCTAGTCAAATACGGAAATGaagtgattttgaaaaatgtccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037627XLOC_037627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059815-exon-scaffold_331-1491911889:669273..670659TCONS_00059815-exon-scaffold_331-1491911889:669273..670659Clytia hemisphaericaexon
TCONS_00059815-exon-scaffold_331-1510915933:669273..670659TCONS_00059815-exon-scaffold_331-1510915933:669273..670659Clytia hemisphaericaexon
TCONS_00059815-exon-scaffold_331-1575043694:669273..670659TCONS_00059815-exon-scaffold_331-1575043694:669273..670659Clytia hemisphaericaexon
TCONS_00059815-exon-scaffold_331-1491911889:671485..672820TCONS_00059815-exon-scaffold_331-1491911889:671485..672820Clytia hemisphaericaexon
TCONS_00059815-exon-scaffold_331-1510915933:671485..672820TCONS_00059815-exon-scaffold_331-1510915933:671485..672820Clytia hemisphaericaexon
TCONS_00059815-exon-scaffold_331-1575043694:671485..672820TCONS_00059815-exon-scaffold_331-1575043694:671485..672820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:669273..672820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0954253	0	0	0	0	0.0508951	0	0	0	0	0	0	0	0	2.79118e-06	0	0	0	0	0	0	0	0	0	0.0628785	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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