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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059820 ID=TCONS_00059820|Name=TCONS_00059820|organism=Clytia hemisphaerica|type=transcript|length=2225bp
tgggactgtcatatttgtccgaaaatcacaccaaaatatccaaaaaaaat
tggcacctatgttattttgattcccttacctttccaaaaaatgtaaaaca
agtgctttgaccgaGAGGAAGTTGTGACTTGGAttgtgaagaaaaaaata
gatGTACTTTAgccatttctaaaaaatctaaaatttcgttttttcaaaaa
atctaaaattccgcaaaaataatcaaaaagtaTGAATGTTACGATATTTA
AACTACGGAAGGCAAAACATTTTTCAGCCTTGAGCAAAATGAGAGAAATA
TCTTCGTTACTTGTTAACACATCAACTGTCAATAGCATCTCTTTCAGCGA
TAAGTGTAAACGctttgctttcttttttttcctatTTGTAGTgtctaaat
ttgaaataaaaatagtgTTTTAAGACACCACTGAATAACCTATTGTTCAA
TTTACACAATTTCAATAATGCACCCCAAATCTACCAAGTATTTAATTTGT
AAGTGGATGAGAAATAAAGTCATTTTAAGCTGAATGTAacatattttttg
gaatttaacTAAATATCTCCTCAGGAACATATTCAGTAGTTGTGGTCGTG
CttgttgttgtagttgtagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGt
tgtggtcgttgttgtagtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCG
TTTTCGTTGTTgtaggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTC
GTTGTAGGAGTGGTCATTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGT
AGTTGTAggtgtggttgttgttgttggagtggtcgttgtggttgtaggag
tggtcgttgtagttgtaggagtggtcgttgtagtagttggagtggtcgtt
gttgttgttgtaggagtggtcgttgtagTTGTAGTTGTAggtgtggttgt
tgttgttgtagttgtaggtgtggttgttgttgttgtagttgtagGTGTGG
TTGttgtggtcgttgttgttgtagttgtagGTGTGGTCGTTGTAGTTGTA
GGTGTGGTCGTTGTCGTTTTTGTTGTAGGAGTGGAAGTTGTTGTAGTTGT
AGAAGTGGGAGTGGTCGTTGTAGTAGTTTGAGTGGTCGTTGTAGTAGTtt
gagtggtcgttgttgttgtaggCCTGGTCGTtggagtggtcgttgtagtt
GTGGTCGTTTTCTTTATCAAACACTCGTCATTTCGACAATACCTAGCGTA
GTAACAATATTGATTGCAATAGTCTGCCACAATTCTATCTCGATAAAGCC
CACGGTCAATGTAACGAGAATTAGGACCTGTCCAGCTCCATTTACATAAG
CATTCACCAGTAGTCAAACATTGACCTTTACCAAACAAATGACATTTAAC
GTTGCATTTCTTTTTCGGTTTCGGCGTAACCACGCTTACACATTTAGGGT
TTCGATACCACCTGTTGTAGTGACAGGATGTCGTACAATAATCAGCTGTG
ATGCGGTTTCGATTCGTACCTTTGTTAACATATTGTGAATTAGGACCCGT
ACATTTCCATCTGCATAAGCAGCGACCGTTCGGTAAACACCGGCCGTACG
CTTTATTGTTTTTTTCGCATCTAGAATGACATTTGGTTGATGGAGCTTTG
GTTGTTGTCGTTGTagtggtggtcgttgtcgtCGTGGGTTTTGAAGTTGT
CGAAAGAAAGGGTGTACAGACACGTGACCACGAAGGCGTGTAGTGACATG
GTACTCGACAATGATCTGCTTTAACTCTCTTATCTAGTGACCCTCCAGTG
AGAGATACTGCATTAGGTCCAGTCCATCCCCACCAACATAGGCAACGACC
ATCAGGTTGACAGACACCAGTACCTGGTGTAGGATGCTCACAGCGTTGGT
CGCAGTGTCTCCTGACTCTGCCTCGATGACTGCCAACAACTTGACGTGTT
CTATATCTCCTTGACGAGTGACCATAGCTATGGTATCTTGCCAAAACTAT
ACCAATGCATAATGCAAAGATAATTGTGATTAAGGTCGACTggttcattt
ttgaaatcagcCACGACAATGTCTTGATTTAAAGtgacaagtaaaaaaaa
ttctgaattcTCCCTTTAAAATCCAACAGTTTTGTAAACCGCTTGTAGTT
CTTGTGAACCTCTTGTGAACCTTCTTTTCAGCTAGTCAAATACGGAAATG
aagtgattttgaaaaatgtccaaat Run BLAST on NCBI transcript from alignment at scaffold_331:670041..672820+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059820 ID=TCONS_00059820|Name=TCONS_00059820|organism=Clytia hemisphaerica|type=transcript|length=2780bp|location=Sequence derived from alignment at scaffold_331:670041..672820+ (Clytia hemisphaerica)
tgggactgtcatatttgtccgaaaatcacaccaaaatatccaaaaaaaat
tggcacctatgttattttgattcccttacctttccaaaaaatgtaaaaca
agtgctttgaccgaGAGGAAGTTGTGACTTGGAttgtgaagaaaaaaata
gatGTACTTTAgccatttctaaaaaatctaaaatttcgttttttcaaaaa
atctaaaattccgcaaaaataatcaaaaagtaTGAATGTTACGATATTTA
AACTACGGAAGGCAAAACATTTTTCAGCCTTGAGCAAAATGAGAGAAATA
TCTTCGTTACTTGTTAACACATCAACTGTCAATAGCATCTCTTTCAGCGA
TAAGTGTAAACGctttgctttcttttttttcctatTTGTAGTgtctaaat
ttgaaataaaaatagtgTTTTAAGACACCACTGAATAACCTATTGTTCAA
TTTACACAATTTCAATAATGCACCCCAAATCTACCAAGTATTTAATTTGT
AAGTGGATGAGAAATAAAGTCATTTTAAGCTGAATGTAacatattttttg
gaatttaacTAAATATCTCCTCAGGAACATATTCAGTAGTTGTGGTCGTG
CttgttgttgtagttgtagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGt
tgtggtcgttgttgtagtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCG
TTTTCGTTGTTgtaggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTC
GTTGTAGGAGTGGTCATTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGT
AGTTGTAggtgtggttgttgttgttggagtggtcgttgtggttgtaggag
tggtcgttgtagttgtaggagtggtcgttgtagtagttggagtggtcgtt
gttgttgttgtaggagtggtcgttgtaggtgtggtcgttgttgtagttgg
agtggtcgttgtggttgtaggagtggtcgttgtagtagttggagtggtcg
ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagta
gttggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTCGTTgtaggagt
ggtcgttgtagttgtagttgtaggagtggtcgttgtagtagttggagtgg
tcgttgtagtagttggagtggtcgttgtagtAGTTGTAGTTGTAggtgtg
gttgttgttgttgtagttgtaggtgtggttgttgttgttgtaggaGTGGT
CGTGGTAGTAGTTGGAGTAGTCGTTGTAGTAGTTGGAGTAGTCGTTGTCG
TTgtaggagtggtcgttgtagttgtagttataggagtggtcgttgtagta
gttggagtggtcgttgtagtAGTTGGAGTGGTCGTAGTAGTTGTAGGTGT
GGTCGTAGTTGTAGGAGTGGTCGCTGTAGTAGTTGTAGTTGTAggtgtgg
ttgttgttgttgtagttgtagGTGTGGTTGttgtggtcgttgttgttgta
gttgtaggtgtggtcgttgttgtagttggaGTGGTCGTTGTGGTTGTAGG
AGTGGTCGTGGTAGTTGTAGGTGTGGTCGTTGTAGGTGTGGTCGTTGTAG
TTGTAGGTGTGGTCGTTGTCGTTTTTGTTGTAGGAGTGGAAGTTGTTGTA
GTTGTAGAAGTGGGAGTGGTCGTTGTAGTAGTTTGAGTGGTCGTTGTAGT
AGTttgagtggtcgttgttgttgtaggCCTGGTCGTtggagtggtcgttg
tagttGTGGTCGTTTTCTTTATCAAACACTCGTCATTTCGACAATACCTA
GCGTAGTAACAATATTGATTGCAATAGTCTGCCACAATTCTATCTCGATA
AAGCCCACGGTCAATGTAACGAGAATTAGGACCTGTCCAGCTCCATTTAC
ATAAGCATTCACCAGTAGTCAAACATTGACCTTTACCAAACAAATGACAT
TTAACGTTGCATTTCTTTTTCGGTTTCGGCGTAACCACGCTTACACATTT
AGGGTTTCGATACCACCTGTTGTAGTGACAGGATGTCGTACAATAATCAG
CTGTGATGCGGTTTCGATTCGTACCTTTGTTAACATATTGTGAATTAGGA
CCCGTACATTTCCATCTGCATAAGCAGCGACCGTTCGGTAAACACCGGCC
GTACGCTTTATTGTTTTTTTCGCATCTAGAATGACATTTGGTTGATGGAG
CTTTGGTTGTTGTCGTTGTagtggtggtcgttgtcgtCGTGGGTTTTGAA
GTTGTCGAAAGAAAGGGTGTACAGACACGTGACCACGAAGGCGTGTAGTG
ACATGGTACTCGACAATGATCTGCTTTAACTCTCTTATCTAGTGACCCTC
CAGTGAGAGATACTGCATTAGGTCCAGTCCATCCCCACCAACATAGGCAA
CGACCATCAGGTTGACAGACACCAGTACCTGGTGTAGGATGCTCACAGCG
TTGGTCGCAGTGTCTCCTGACTCTGCCTCGATGACTGCCAACAACTTGAC
GTGTTCTATATCTCCTTGACGAGTGACCATAGCTATGGTATCTTGCCAAA
ACTATACCAATGCATAATGCAAAGATAATTGTGATTAAGGTCGACTggtt
catttttgaaatcagcCACGACAATGTCTTGATTTAAAGtgacaagtaaa
aaaaattctgaattcTCCCTTTAAAATCCAACAGTTTTGTAAACCGCTTG
TAGTTCTTGTGAACCTCTTGTGAACCTTCTTTTCAGCTAGTCAAATACGG
AAATGaagtgattttgaaaaatgtccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059820-exon-scaffold_331-1491911889:670041..670968 | TCONS_00059820-exon-scaffold_331-1491911889:670041..670968 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1510915933:670041..670968 | TCONS_00059820-exon-scaffold_331-1510915933:670041..670968 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1575043694:670041..670968 | TCONS_00059820-exon-scaffold_331-1575043694:670041..670968 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1491911889:671224..671262 | TCONS_00059820-exon-scaffold_331-1491911889:671224..671262 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1510915933:671224..671262 | TCONS_00059820-exon-scaffold_331-1510915933:671224..671262 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1575043694:671224..671262 | TCONS_00059820-exon-scaffold_331-1575043694:671224..671262 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1491911889:671485..671547 | TCONS_00059820-exon-scaffold_331-1491911889:671485..671547 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1510915933:671485..671547 | TCONS_00059820-exon-scaffold_331-1510915933:671485..671547 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1575043694:671485..671547 | TCONS_00059820-exon-scaffold_331-1575043694:671485..671547 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1491911889:671626..672820 | TCONS_00059820-exon-scaffold_331-1491911889:671626..672820 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1510915933:671626..672820 | TCONS_00059820-exon-scaffold_331-1510915933:671626..672820 | Clytia hemisphaerica | exon |
| TCONS_00059820-exon-scaffold_331-1575043694:671626..672820 | TCONS_00059820-exon-scaffold_331-1575043694:671626..672820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:670041..672820 + |
Blast
The following BLAST results are available for this feature:
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