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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059931 ID=TCONS_00059931|Name=TCONS_00059931|organism=Clytia hemisphaerica|type=transcript|length=1754bp
TTTTAAATAAACAAgttacattttaaaatttagttattaataaaaaccct
tttttgattacaattaaattcaattttttataagtttcttAAATGCTGCC
GAATCTGCTCGTACTCTTAAAGAATCACGAGTTCTCGATGGATGAAAGTC
AAAAGTTTCATCTTTTATGATAGCTGCCCAGTTCTTCCCTCCATGCTTTT
GTAATCCCTTTAAAAGTTCTTCATCTTTCTTTTGCGAAAATTTTACATTT
CTGGAAGATCTTCTTGCTGTTTCCCTTATAGCAATCTCCTTTTTTACTTC
AGCACTTTGACTTATCTTTCGTGTATTGTAGGCTTTCTCTTTCCCAGATC
TGATTGGTGTAGATGATCCTGTCGAGCTGATGATTTCCATTTCTATGTCT
GCCGAACTGTTTAGATTTTGACTTGCAATAGCTTTGGATGAAAACATTGA
TTGAACGCGTTGCATAATGCTGTTCACTTCTGTGCATTGAGATTCGATAC
TACTGGGCTCAAATGCTTCATCATCTGATTCAATTGGGATAGCCATATTG
TTGCTTGTTGATTTTGAACAACATTGTCCGCCGTCAAAACATCTAGACTA
GCTTGTTTCGTAACAAATGGACTTTTTGATAATGCAGCTAAATCTCTAAA
TACCCCTGAAATCGCCACTTGGTGATCCTGGCAAGCCGTGCCTAGCATTT
TCTCCATGCATTTCTGTCCCTGTGTAGCGACTATTCTCGATTGTTTCTTT
TTGTAGTGTACCTTTGCAACATCAGAGCTATGCTTTCGGTCTTCTGATAT
TATTTCCTGTTCTGAACGAGATAATCTATCAGCACTTGTTGTTTCGACTA
TTTGTCTGTATCTTGTTGGATGGATATACTTTCCTATGGCTTGATGAACA
AGTATTGTCATTGCTGTTGTTAGAGATTGATACTGATTGCCTGTCGTTGA
TAATAATAAGTAATCACAAGTCGGTTTCATAAGTGGTTGAATAAAGTCTA
TGTATGTATCTAATATAGTAAATACTTCTTCAGTTAAAATTAGTGTATCA
AAGAGATATTTACCTGTCGTTTTGAATTCTCTTTGGTCAATAAAACCATC
AGTCTGTTTAGCTTTTTCGATCATTTGTAGAGTCAAGTATTGAAATGTCA
TTGGTCTACTACATTTCACACGAAGAAATAAAAAGGTTGTAATAAAACGA
GTGCAGAATGTAAGTTCTATCTTGTTCGGCAGAGGCTTTTGTACTTTGCA
TTTGTTGACAATCTCTTTAAAATTGAAGATATGATAAGGTATTACTGCTT
CCATGTCCTCTAAGCTGGCCCAGCTATCACGACCGATAAGTGTCTCTAAG
TTAAAGTTTCTTGTACCGTCAAGAcgtttcttctttctcaaattttcttt
tgctCTCCTCAAATAAACTTCTGTTATTGTAAAACACCTCAATTTGTTAT
CATTGACTCcaaatgattttttataatCCATTAAATCTGAGATAGCTTTT
ACATAATTCAATGCTCCTGAAGAAGATAATTTCCATTCTTCCTCTAAAAC
AGCTAAAAATTTCAGTATGATTGTTGTTGACCCTAAACAGCAGTCAATCA
GTTCATAAGATAAAGGTGTTTAGGATTCGTTATCCCCAGtgctattcata
aaaaatttcaaagcacgTTTGGCCACTTGTTTGGCTTCTCTGTCGTTTTT
ACCTCCTCCACAAGTAGTAGTTAGCCATTTATAAAACGATTTACCGATCC
CTTC Run BLAST on NCBI protein sequence of TCONS_00059931-protein >TCONS_00059931-protein ID=TCONS_00059931-protein|Name=TCONS_00059931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MDYKKSFGVNDNKLRCFTITEVYLRRAKENLRKKKRLDGTRNFNLETLIG
RDSWASLEDMEAVIPYHIFNFKEIVNKCKVQKPLPNKIELTFCTRFITTF
LFLRVKCSRPMTFQYLTLQMIEKAKQTDGFIDQREFKTTGKYLFDTLILT
EEVFTILDTYIDFIQPLMKPTCDYLLLSTTGNQYQSLTTAMTILVHQAIG
KYIHPTRYRQIVETTSADRLSRSEQEIISEDRKHSSDVAKVHYKKKQSRI
VATQGQKCMEKMLGTACQDHQVAISGVFRDLAALSKSPFVTKQASLDVLT
ADNVVQNQQATIWLSQLNQMMKHLSPVVSNLNAQK Run BLAST on NCBI transcript from alignment at scaffold_331:15162..16915 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059931 ID=TCONS_00059931|Name=TCONS_00059931|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at scaffold_331:15162..16915 (Clytia hemisphaerica)
GAAGGGATCGGTAAATCGTTTTATAAATGGCTAACTACTACTTGTGGAGG
AGGTAAAAACGACAGAGAAGCCAAACAAGTGGCCAAAcgtgctttgaaat
tttttatgaatagcaCTGGGGATAACGAATCCTAAACACCTTTATCTTAT
GAACTGATTGACTGCTGTTTAGGGTCAACAACAATCATACTGAAATTTTT
AGCTGTTTTAGAGGAAGAATGGAAATTATCTTCTTCAGGAGCATTGAATT
ATGTAAAAGCTATCTCAGATTTAATGGattataaaaaatcatttgGAGTC
AATGATAACAAATTGAGGTGTTTTACAATAACAGAAGTTTATTTGAGGAG
agcaaaagaaaatttgagaaagaagaaacgTCTTGACGGTACAAGAAACT
TTAACTTAGAGACACTTATCGGTCGTGATAGCTGGGCCAGCTTAGAGGAC
ATGGAAGCAGTAATACCTTATCATATCTTCAATTTTAAAGAGATTGTCAA
CAAATGCAAAGTACAAAAGCCTCTGCCGAACAAGATAGAACTTACATTCT
GCACTCGTTTTATTACAACCTTTTTATTTCTTCGTGTGAAATGTAGTAGA
CCAATGACATTTCAATACTTGACTCTACAAATGATCGAAAAAGCTAAACA
GACTGATGGTTTTATTGACCAAAGAGAATTCAAAACGACAGGTAAATATC
TCTTTGATACACTAATTTTAACTGAAGAAGTATTTACTATATTAGATACA
TACATAGACTTTATTCAACCACTTATGAAACCGACTTGTGATTACTTATT
ATTATCAACGACAGGCAATCAGTATCAATCTCTAACAACAGCAATGACAA
TACTTGTTCATCAAGCCATAGGAAAGTATATCCATCCAACAAGATACAGA
CAAATAGTCGAAACAACAAGTGCTGATAGATTATCTCGTTCAGAACAGGA
AATAATATCAGAAGACCGAAAGCATAGCTCTGATGTTGCAAAGGTACACT
ACAAAAAGAAACAATCGAGAATAGTCGCTACACAGGGACAGAAATGCATG
GAGAAAATGCTAGGCACGGCTTGCCAGGATCACCAAGTGGCGATTTCAGG
GGTATTTAGAGATTTAGCTGCATTATCAAAAAGTCCATTTGTTACGAAAC
AAGCTAGTCTAGATGTTTTGACGGCGGACAATGTTGTTCAAAATCAACAA
GCAACAATATGGCTATCCCAATTGAATCAGATGATGAAGCATTTGAGCCC
AGTAGTATCGAATCTCAATGCACAGAAGTGAACAGCATTATGCAACGCGT
TCAATCAATGTTTTCATCCAAAGCTATTGCAAGTCAAAATCTAAACAGTT
CGGCAGACATAGAAATGGAAATCATCAGCTCGACAGGATCATCTACACCA
ATCAGATCTGGGAAAGAGAAAGCCTACAATACACGAAAGATAAGTCAAAG
TGCTGAAGTAAAAAAGGAGATTGCTATAAGGGAAACAGCAAGAAGATCTT
CCAGAAATGTAAAATTTTCGCAAAAGAAAGATGAAGAACTTTTAAAGGGA
TTACAAAAGCATGGAGGGAAGAACTGGGCAGCTATCATAAAAGATGAAAC
TTTTGACTTTCATCCATCGAGAACTCGTGATTCTTTAAGAGTACGAGCAG
ATTCGGCAGCATTTaagaaacttataaaaaattgaatttaattgtaatca
aaaaagggtttttattaataactaaattttaaaatgtaacTTGTTTATTT
AAAA Coding sequence (CDS) from alignment at scaffold_331:15162..16915 >TCONS_00059931 ID=TCONS_00059931|Name=TCONS_00059931|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_331:15162..16915 (Clytia hemisphaerica)
ATGGattataaaaaatcatttgGAGTCAATGATAACAAATTGAGGTGTTT
TACAATAACAGAAGTTTATTTGAGGAGagcaaaagaaaatttgagaaaga
agaaacgTCTTGACGGTACAAGAAACTTTAACTTAGAGACACTTATCGGT
CGTGATAGCTGGGCCAGCTTAGAGGACATGGAAGCAGTAATACCTTATCA
TATCTTCAATTTTAAAGAGATTGTCAACAAATGCAAAGTACAAAAGCCTC
TGCCGAACAAGATAGAACTTACATTCTGCACTCGTTTTATTACAACCTTT
TTATTTCTTCGTGTGAAATGTAGTAGACCAATGACATTTCAATACTTGAC
TCTACAAATGATCGAAAAAGCTAAACAGACTGATGGTTTTATTGACCAAA
GAGAATTCAAAACGACAGGTAAATATCTCTTTGATACACTAATTTTAACT
GAAGAAGTATTTACTATATTAGATACATACATAGACTTTATTCAACCACT
TATGAAACCGACTTGTGATTACTTATTATTATCAACGACAGGCAATCAGT
ATCAATCTCTAACAACAGCAATGACAATACTTGTTCATCAAGCCATAGGA
AAGTATATCCATCCAACAAGATACAGACAAATAGTCGAAACAACAAGTGC
TGATAGATTATCTCGTTCAGAACAGGAAATAATATCAGAAGACCGAAAGC
ATAGCTCTGATGTTGCAAAGGTACACTACAAAAAGAAACAATCGAGAATA
GTCGCTACACAGGGACAGAAATGCATGGAGAAAATGCTAGGCACGGCTTG
CCAGGATCACCAAGTGGCGATTTCAGGGGTATTTAGAGATTTAGCTGCAT
TATCAAAAAGTCCATTTGTTACGAAACAAGCTAGTCTAGATGTTTTGACG
GCGGACAATGTTGTTCAAAATCAACAAGCAACAATATGGCTATCCCAATT
GAATCAGATGATGAAGCATTTGAGCCCAGTAGTATCGAATCTCAATGCAC
AGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059931-exon-scaffold_331-1491911889:15162..16915 | TCONS_00059931-exon-scaffold_331-1491911889:15162..16915 | Clytia hemisphaerica | exon |
| TCONS_00059931-exon-scaffold_331-1510915933:15162..16915 | TCONS_00059931-exon-scaffold_331-1510915933:15162..16915 | Clytia hemisphaerica | exon |
| TCONS_00059931-exon-scaffold_331-1575043694:15162..16915 | TCONS_00059931-exon-scaffold_331-1575043694:15162..16915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:15162..16915 . |
Blast
The following BLAST results are available for this feature:
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