TCONS_00060086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060086
Unique NameTCONS_00060086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060086 ID=TCONS_00060086|Name=TCONS_00060086|organism=Clytia hemisphaerica|type=transcript|length=273bp
tttttatttaggaaTAGAAAATACATAAATGCTCCATCCTGCCAAATTTC
AGTTCTAAAGccccattagatcaaaagttattgctcATGGAATCCATAAT
CCATTTTCATTATGGAGTCATTTAATCCTAACGTGATCCTAACTTTAAGA
GGCTATAAGTACTGGTTTAGTTTCTCTAGAAGGCTCGGGAAAAATGGAAT
GGAATCTTCAATCCTTTGCCGATTCCCCTGATATTATATTAAGAAAAGGt
gcattttgtatttattttaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_333:352092..352364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060086 ID=TCONS_00060086|Name=TCONS_00060086|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at scaffold_333:352092..352364 (Clytia hemisphaerica)
gttttaaaataaatacaaaatgcaCCTTTTCTTAATATAATATCAGGGGA
ATCGGCAAAGGATTGAAGATTCCATTCCATTTTTCCCGAGCCTTCTAGAG
AAACTAAACCAGTACTTATAGCCTCTTAAAGTTAGGATCACGTTAGGATT
AAATGACTCCATAATGAAAATGGATTATGGATTCCATgagcaataacttt
tgatctaatggggCTTTAGAACTGAAATTTGGCAGGATGGAGCATTTATG
TATTTTCTAttcctaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037801XLOC_037801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060086-exon-scaffold_333-1491911889:352092..352364TCONS_00060086-exon-scaffold_333-1491911889:352092..352364Clytia hemisphaericaexon
TCONS_00060086-exon-scaffold_333-1510915933:352092..352364TCONS_00060086-exon-scaffold_333-1510915933:352092..352364Clytia hemisphaericaexon
TCONS_00060086-exon-scaffold_333-1575043694:352092..352364TCONS_00060086-exon-scaffold_333-1575043694:352092..352364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:352092..352364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543338	0.52984	2.84874	5.87962	2.93088	1.64801	0	1.96191	1.37358	1.13427	2.20189	0.72372	3.97492	1.12582	0.308525	1.32438	0.407881	2.50839	6.35338	2.24279	2.10132	1.53742	1.86894	0.566379	2.63728	3.59768	2.23507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top