TCONS_00060131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060131
Unique NameTCONS_00060131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060131 ID=TCONS_00060131|Name=TCONS_00060131|organism=Clytia hemisphaerica|type=transcript|length=396bp
TAATTTTCTATGAAAAGTTTTTCCTAAGTTTACCAACAAACTTCAAAAGT
TTAAGGATGcttaaatacacgttttttatataagaacaaactatataaga
acatggacaaaaatgctcacaaaatggtgaaaataagagtaCCTCAAGGC
TCGATTATTGGACCTGTAGCCTTCACAATCAATGTTGAAGATATGCCAAG
CTCAACCAATAGTCAACTTGAGCTACTTGCTGATGATTcgacactttttg
aaattgGAGATTCTGTCGACAATGTCATCCTATCACTTCAAAGAGAAATA
CAGAACTTTCACTGCTACGCCACCAAAAACTCGCTCACAATACACCCTGA
TAAGTGCAAGAATCTCATCATGAGTCGAATCAGAATGATTGGTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_334:83909..84304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060131 ID=TCONS_00060131|Name=TCONS_00060131|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at scaffold_334:83909..84304 (Clytia hemisphaerica)
GGGACCAATCATTCTGATTCGACTCATGATGAGATTCTTGCACTTATCAG
GGTGTATTGTGAGCGAGTTTTTGGTGGCGTAGCAGTGAAAGTTCTGTATT
TCTCTTTGAAGTGATAGGATGACATTGTCGACAGAATCTCcaatttcaaa
aagtgtcgAATCATCAGCAAGTAGCTCAAGTTGACTATTGGTTGAGCTTG
GCATATCTTCAACATTGATTGTGAAGGCTACAGGTCCAATAATCGAGCCT
TGAGGtactcttattttcaccattttgtgagcatttttgtccatgttctt
atatagtttgttcttatataaaaaacgtgtatttaagCATCCTTAAACTT
TTGAAGTTTGTTGGTAAACTTAGGAAAAACTTTTCATAGAAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037827XLOC_037827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060131-exon-scaffold_334-1491911889:83909..84304TCONS_00060131-exon-scaffold_334-1491911889:83909..84304Clytia hemisphaericaexon
TCONS_00060131-exon-scaffold_334-1510915933:83909..84304TCONS_00060131-exon-scaffold_334-1510915933:83909..84304Clytia hemisphaericaexon
TCONS_00060131-exon-scaffold_334-1575043694:83909..84304TCONS_00060131-exon-scaffold_334-1575043694:83909..84304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:83909..84304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326501	0.308332	0.644434	0.915512	0.318365	0.550856	2.38963	2.05516	2.26449	1.28992	1.51717	1.4338	0.0397856	0.874511	0.220599	0	0.996957	0.291957	1.64335	3.54671	1.77097	1.85419	0.439815	0.395532	1.94236	1.73571	2.03382	1.90475	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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