TCONS_00060182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060182
Unique NameTCONS_00060182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060182 ID=TCONS_00060182|Name=TCONS_00060182|organism=Clytia hemisphaerica|type=transcript|length=592bp
GATTCAACTGGGATCAAAGCCAACAAGgTGTAATTTTGAGTAGTTTTTTC
TACGGTTACATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTA
CGGTGGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGA
CATTATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACA
GTCAGAGTCCTTGAAGGTATTGTCCAAGGTGGCCTTTTTTCAGCGTTGAA
TCAGTTGGTATCACAATGGGTTCCACAAACTCAAGTCACGTCTTTCTTTG
TTGTTGTGTATACAGGTTTACAATCAGGATCAGTGGTAGCTTTGTCAACT
TCTGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTTCTACTT
ATACGGAGGTTTATCTTTCATTGTATCAGTTTTATGGTTCATATTTGTTT
ACGATTCACCATCTCAGCATCCTTTCATATCAGATGAAGAAAANTATTTG
TTTACGATTCACCATCTCAGCATCCTTTCATATCTGATGAAGAAAGGACC
TACATACAGAAACATGTGAAAAAGGTGTCGGAATCCAATAAG
Run BLAST on NCBI

transcript from alignment at scaffold_336:191015..197718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060182 ID=TCONS_00060182|Name=TCONS_00060182|organism=Clytia hemisphaerica|type=transcript|length=6704bp|location=Sequence derived from alignment at scaffold_336:191015..197718- (Clytia hemisphaerica)
GATTCAACTGGGATCAAAGCCAACAAGGTTAATTCCAATTTATGACTTAT
TAACCTATCAGCCCCTTAACAGCGCGGTCGGCTTGTTAGAGGACTGGTAA
TAATCTTATAAGGAAAATCTTTTCTCGGCGCACGGCATTTTTAGTCTGCC
TCGATAAACAAAAAAAAAATAGAATTCCTGCTAAGACTATACTCCATGCG
AGAGACATTTTCTCGAGTCCGTTTCGTAATAACAACTCGATAGAGGTATG
AAATAAAAGTTCCCTGTATGTGTTGAAAAGTGCCAGAATGAGGGCTAGAA
AAGAGAATAAGAATGTCCCGGTTGAAATGTTCAGAAAGATTAATTAGGGT
TAACCACTGAACGTCATATAAACCTTGGAGGAAGTTTCTCAATCCCGGCA
AAGCAAAATTTTTGATCGGAGTTCTTTTGAGAGTGGTACCCTAATTTTCC
TCCAATCTTTGTGATGGTGAAGCGCCGTTTGACGTTGATTTTTAAACACT
GGAATGGCTTCTCCGATCAAAGATTGCGAATTTAACTTTCTAAATGTCAG
CGGGGTAAACCTTTTGGTACAGTAGCTCCATGTACTACTTTCTTTATAAA
TACTTCTTTCATTTTTACCTTTTTAGGTGTAATTTTGAGTAGTTTTTTCT
ACGGTTACATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTAC
GGTGGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGAC
ATTATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACAG
TCAGAGTCCTTGAAGGTATTGTCCAAGTAAGTCCCCCAGCTGGCACACAA
CGTTGTTTTAACGTTCAAACAAGAATCGCAAAATTGCGACTAAATATTTC
CTTAAAAATGAAGGTCATTATTGACATATATAAAAAAGCACACATAATAA
AGTATACATATATATTTGTCCAGAAAGAACGAGCATGTTTTTTGCTTTGA
TTTGGTGTTTAAAAATATGTACTTATCAGTCCTAAAAAAAATACAAATTT
GAATATAATGAGGGCAATAAGTCTGATTAAATGTTACTTTATACACAAGA
TTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTAAAAATCTATCTTTAATAGCAACAAAGAAAAAAATGTGGC
TCAAAGTTTTAAAGCATTTAAATAGCTTGTAAACAGTAGACCTTTTTTTA
AAGAGGCAGCCATATCGAATAATTATGTACTCCAGCATAACAATGATACA
GGCATGCATAATTACTGTATCATGCATATTTTAAAAATTCAGTAGGTATA
GAGAATTCAAGATTTGAAAACAGACACTGCATTGGTTTACAAGACTAGAC
TAGAGAAAGATGTCAACCATCCACACGGTTCATGAAAAAAATAAAGTATT
TATCAAAAACAGGTTCTCTTTTTTTGGTAATCAATACACCGTTTAACAGG
TGTTGGTTGCGCACGCGTATATACAATTTTCTATTGTTTTGATTTTGGCA
ACCACAAGAAACTTCACTCTCCCCCGTAAAAAATGGTAGGTAAACATCCA
GTTCTCATAAGAAAACCCAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTCTTGATGAATTTTTGTGAAATTTTCAGGAGAGATACATAAAATTG
TCATTAATATCATGTTCAAACATCTAAAACATTCTCTTTAAAGGAAGGAA
AAAAAATAGCAATGTTTACATTTCTCTAACCTTCCAGCCACAGTACTAAA
TTGAGCATTTTTACCTACCGCCTCTACGGTGGAGATGGCGAGACTGTTAA
ACGGTGTATTCCAACAAACAACAATCAATATACCGTAACAGGATCCCAAC
CAACAAAACCCACACCACCAAAATTGTAAAAATAAGTCAATATAATTTCT
ATCAACAATTTCTCGTAAAATGTTTTTTTTTCCAACATTCTGACTGTCTG
ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGA
CCCTTACAGTGCATTTGAGGTGCCTTGAAAAAGACACCCTTAGTGCCCGC
ACATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCCCGGGATATCTCAGT
AATTAGTCATTAGAAGTAAATACATGTTGACGACCAATAGACCGACCAAC
AACGGTAAGGGTCCAGTGAGCACTTAGTGAGGTCCCTTATCTTGAAAGAA
AGACATCAAAAACCCAAATAAGAAAAAAAACTACTTGGAATCGAAAAATA
TAATCAAGAATGAGGAACCGATATAAAAATGGCGGAAAGTTTTACGTTCC
ACCTAAGCAAAAATTTTAGAAATTGAGAACTATGATATACTAAATGGTCG
CTTAATCGCGCCACCTAGTCTATTAAAAAGCTTTAATTTCTTTAATTTAT
GGATTTCAAGCTACTAGAGATTGGATGAATTTTGTTAATGTTGTACCATC
CACATCATCCACCAAAACGTCAATACCGTTCTACCTCGAATAAACGCGCT
ATCTAATTCGATTTTCAAGAGGATTGGATTTTTACCGAATAAGGGAGCGT
ATCGAATGGTAGAATGTCGTTAATGAGAGTTTCCTGATGACCGTGACTTT
CAATATTATCGAATAATGGAGTGCATCGAATATTAGTGCGTCGAATTGGA
GAGCGTCTTGAAATCTAAATGACTGTCTATTCGAGAAGGATTGTAGAAAT
AGTTCGGTATGAAACATCACTATAAAATCTCAGGGTTGTGGTTTCGATCC
CAAAACAGCGAATTAATAGCTTAGATTGAGTAGTCTGATCTAGGCGGTAA
GTCACTGGAAGCTGAGAGTAGGGATCACTGACCTTTATATATCCCTGGAC
CAAGCAATATCCGCCATCTTTGATCGGAGTTTTTTTGGAATTGGAACCCG
AGAAGAAGCCATTGCAATGTTGAAAATTAACGTCTAACGTCGCTACATCA
TCAAAAGAATTTGAGGAAAAGTAGACCTAGCGCTCTCGATGCATTTACAC
CGCTATCGAGTAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCCGA
TCAAAGATTTTGCTTGGCTGGAATTGAGAAGCTTGGTCCAGGGTATATAA
AGGTCAGTGGTAGGGATGCACCTAAACATTCGATCTCCCAGGTCTAGTGC
AAATAGAACAGGGGATGAAATCAATCACTCCCGGCTCCGCCGACAGGCAC
CAGATGTACTTACTATATACTATACCTATACTCATACTTATTATTTCTTT
GTCATAGGGTGGCCTTTTTTCAGCGTTGAATCAGTTGGTATCACAATGGG
TTCCACAAACTCAAGTCACGTCTTTCTTTGTTGTTGTGTATACAGGTAGA
GTTGTCTCTTTCTAATTCGATATTCAAGTGACCAAAACTTTTCTTCGAAT
TAGAGAATGATTCGTATAATAAAGGGCGTTTCTACTTTCCCACTGAGCGA
AGTCGACGGTTTGATTTGAATTATAGATGTTCGAAATATAGAGGTTCGAA
TTAAAGAGACTTGATTTGGATCAGCAACAAGACAATTTAATGCACCTATC
AACCCTTGACTGCGCGGTCGGGTTTTGAGGGGACTGGTAATGAATTTACA
AGAAAATGACGTCTCTAAACTCATTGTTTAAGAAAATGTCAATGCAACGA
CTTCAGACATTTTGACGTCATTCCTTCATTGTAAGCTCGAACCCAGTTTC
CTCACACTTTAAAGGTTTTTTACAACGAGACAGACAATTATCAAAACTTA
GGCAAACTCACTCTGAAGGTATGTCAGGGTGTGCTGACAACGTCTCCTGA
AAAACAGTATACAGTCGACTCTTATTGGAACTCGAACATGGAATCAGATT
CGTTCGAATTACAGGGAGATTCAAGAGATTTTCTCCTTGACGGGGACTGG
AAACAAGTTCAAATAAGTAAGAGTTTACTGTAAATCTTTGACTCCTTTTT
TTTCATGATACAGGTTTACAATCAGGATCAGTGGTAGCTTTGTCAACTTC
TGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTTCTACTTAT
ACGGTATGCTATATATACAGTGTGTCCCGAAAAAAGCAGACAAATTGTTA
TATGAATTATATCCAATGTATAGCAATGTGCCCTCCCGGTTATTACCATA
ATGGCTTTATGGCAACTCCTGAACTTGGGCACAGGATGTACGGTTACACA
TTTTGTGGATTGCATTGTGGACTCACAAAAATAATATCTTCACAATTTAA
GCCAGACTATGTCTTCAATCTATTCAATGATCTGGGGTCTGTACATTTTT
AACATTACTCGCGAGGGGAAAATATATCTTTAAAAGTATATGGTCTGCTC
CCACAAATAGTTGGCAATCTGCAATCATTTAGTTAAAAATGGCTTGCGAG
GGAGTACATTCAACTCTCTCTCTAATTCGACTCGAACGCTATCTTCCTCT
TCCATGAAGATTCAATTGAAAATATTTCAAGATGTATTCTATAGTTTTTC
TACATTTACATTTATCAGTAGTTTTATTCTCAACTTCAGTTGAGCTAGAA
TCTGAGAATGTCTGTGTGTCTGTCTGTGTGTCTGTCTGTCTGTCTGTCAC
AAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGCTTGGATTTGGCTGA
AATTTGGCACACTTGTTCCTTGGGTCAATATCTGGGGGTATTTTTTTCAT
TTTTTGAAAATTTTAATTTTTGGGGCCTAGGGACGAGTTTTTCGCCAAAA
CGAAGCTAAAACTTTGGGGCAGCCTGGAAACTTCAAAAATTGTCGGATTT
AGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTAGGGGTGTTTT
TTTTATTTTTCAAAAATCTTGATTTTTGGGGCCTGGGGACGAGTTTTTCG
CCAAAACGAGGCTAAAACTTTAGAGCAGAGCCTGCAGGCCTCAAAAATGG
TTGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGG
GGTCTACAATTGGGCCTATGAATAATTTGAAGCCACTGAAGTTGAGCCCA
GTGTGTTGCGCACGTTCGACTATATTCTTAATAATGTAGCTTAAGACATT
CGACTCGAACGCTGTCTTCCTCTTCCACGGAAATTTAGTTGAAAATATTT
CAAGATGTGATTTCAAAGTATCCAGTTAAATGAGAAAGTCAACAAAATTT
CATTTATTCAGCCGAAGCTTTTCGGTATAACCATGCCATGATCAATGCTA
GATCTCGCAAAAAAAAACTCAAGATTTTTCTTTGATCTATCTTCATTTCA
TTTATAGGAGGAATTTCTGTCATCGTGTCAGTTTTATGGTTCATATTCAT
AATAATGTAGCTTATGACATTCGACTCGAACGCTATTTTCCTCTTCAATC
GTGGAGATTTAGTTGAACCAAATATTTCAAGATTTATTCCTTACTTTTTC
TACATTTCCATTCATAGGAGGTTTATCTTTCATTGTATCAGTTTTATGGT
TCATATTTGTTTACGATTCACCATCTCAGCATCCTTTCATATCAGATGAA
GAAAANTATTTGTTTACGATTCACCATCTCAGCATCCTTTCATATCTGAT
GAAGAAAGGACCTACATACAGAAACATGTGAAAAAGGTGTCGGAATCCAA
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037858XLOC_037858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060182-exon-scaffold_336-1575043694:197692..197718TCONS_00060182-exon-scaffold_336-1575043694:197692..197718Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1575043694:196893..197092TCONS_00060182-exon-scaffold_336-1575043694:196893..197092Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1575043694:193324..193411TCONS_00060182-exon-scaffold_336-1575043694:193324..193411Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1575043694:192616..192705TCONS_00060182-exon-scaffold_336-1575043694:192616..192705Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1575043694:191015..191201TCONS_00060182-exon-scaffold_336-1575043694:191015..191201Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1510915933:197692..197718TCONS_00060182-exon-scaffold_336-1510915933:197692..197718Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1510915933:196893..197092TCONS_00060182-exon-scaffold_336-1510915933:196893..197092Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1510915933:193324..193411TCONS_00060182-exon-scaffold_336-1510915933:193324..193411Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1510915933:192616..192705TCONS_00060182-exon-scaffold_336-1510915933:192616..192705Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1510915933:191015..191201TCONS_00060182-exon-scaffold_336-1510915933:191015..191201Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1491911889:197692..197718TCONS_00060182-exon-scaffold_336-1491911889:197692..197718Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1491911889:196893..197092TCONS_00060182-exon-scaffold_336-1491911889:196893..197092Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1491911889:193324..193411TCONS_00060182-exon-scaffold_336-1491911889:193324..193411Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1491911889:192616..192705TCONS_00060182-exon-scaffold_336-1491911889:192616..192705Clytia hemisphaericaexon
TCONS_00060182-exon-scaffold_336-1491911889:191015..191201TCONS_00060182-exon-scaffold_336-1491911889:191015..191201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:191015..197718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.181126	0	3.91499	1.30552	0.00237639	0.712984	0.125878	0.420768	0	0.65873	0	0.00889219	0	0	0	0	0	0.679616	0	0	0	0
Blast
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BLAST of TCONS_00060182 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.106e-37
Identity = 63/163 (38.65%), Postives = 103/163 (63.19%), Query Frame = 3 
Query:    3 FNWDQSQQGVILSSFFYGYILTQIFGGWVSLRYGGRKVFGWSLMATSILTLLTPVASRISYFCLVTVRVLEGIVQGGLFSALNQLVSQWVPQTQVTSFFVVVYTGLQSGSVVALSTSGYLADSSYGWPSSFYLYGGLSFIVSVLWFIFVYDSPSQHPFISDEE 491
            FNWD    G+I  SFF+GYI+TQI GG+++ R    +VFG +++ TS L +L P A+R+ Y C++ VR+L+G+V+G  + A + + S+W P  + +      + G  +G+V+A+  +G L   + GW S FY+YG    +  + W +  Y+SP++HP I+DEE
Sbjct:  117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYT-GWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEE 278
The following BLAST results are available for this feature:
BLAST of TCONS_00060182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU26.106e-3738.65Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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