TCONS_00060212 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060212
Unique Name	TCONS_00060212
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1622

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_337:109154..110775-

transcript sequence

>TCONS_00060212 ID=TCONS_00060212|Name=TCONS_00060212|organism=Clytia hemisphaerica|type=transcript|length=1622bp
TTGAAGAAATACAATGATGTCATCAAATTTGGAAGCCcttcaaaagaaac
aaagacGGCTGTAGAATTTCCGTATCTGCCAGTTCCTGAACCAAAAGGTC
AGCCAGATGCACCCATAATCAATATTAGCGACATCACCATTATCTGTGAC
ATTGTATCAATTATAAGGCATTCATTAATATTGATAACCGTCCAGTTGTA
AGTGTGCAGCTTCCTTACAAGAGTGATCCTGTCAACAAAAAAGATTGTTG
GGCTAATATGACTCAACTGGTGCAATGCCATTGGCTCTTTGGGGTGATTT
AGTAAATCAAGTGGAGAGTAGTGGAACCTATCGTGTTATCAACGCTAAAG
TGAAGTCTGGGTATGGCAAGTTGTCTCTAACCACTAATTCTTCAACCAAA
ATTTACAATGATAACACTGCTGTAGCCCCATCCCCATTTTACCAACTAAT
CAGAAAACATATCAGCTGTCAAGTTTCCACCCATCAGAGTGATCAATTTG
CAACGCAGGTATTACTGTACTTCATGTAATAAATTCAAAGATTCTACATC
ANACGCAGGTATTACTGTACTTCATGTAATAAATTCAAAGATTCTACATC
ACCAAATCCAAACTTATTTTCTTGCTCATCAtgtaaatctaatttctcaa
cCGTACGCATGAAAAAGAAAGTTAGTACTCTGTTAGAATTTGAGGATGAT
CATGAATCGGTCAAAGTTAGGTTTGGAAGAAGCCAGGTGGAGGAATACTT
TAAAAGATTTGGCTCTGCCGTGCCCCGTGATGTTGATGACATCAGTATTG
CCCTACTGCAGGACTGTAACTCTATCATGCTTTATGATGCACAAAATTAT
TGTATTGGGTTTAAGTAAACTTACTCCCTTGCTGTGAGACGTATAAATTT
ANNNNNNNNNNNNNAGTATTGCCCTACTGCAGGACTGTAACTCTATCATG
CTTTATGATGCACAAAATTATTGTATTGGGTTTAAGTAAACTTACTCCCT
TGCTGTGAGACGTATAAATTTATAGAACTGTCAGAATTGAAATTTTAATC
TTGATCTTTTTATGACTTGGAGGTAAATTAAATACCATTCAGTTCTACTG
TTacattgttattttttgttctcTTTTGATGTTTGAAGGTGTGGTTATTA
AGTTTTATCTTCACTCAGTCTTCTGAACTTTGAAAAGAATCAATTTATAA
TTATTCTTATAAGAGTATGGGCTATGATGAGAATGTTTGTCCATAtgtta
aaaactttgaaatcaaattataattgttcttataaaagtatGGGCTATGA
ACGGAATGTGAATGTGTGtcgatttgttgttttttctattttgttctGCC
CTATATTTCAGCTATCCTGTGGCACTGTTTTGGCCAATCTAACTTGCCAG
CTTTGAGAATAGACCAGTATTTAGCTTCCTTGACTTGCCTTTCTCAATCA
TATACTTTGCTTCTGCTCTTCTTAATTTGTATTTTCATATTCTAAGCGTA
TATagattttaatatattttcatGGATACTACTTCATATTTTAAACTGTA
TAATAACTTAAAAAACAAACTCTTCAGATTTTCCTGCTCTTTTGTATTTG
ATGTTCTATGAATTTATGTgga

Run BLAST on NCBI

transcript from alignment at scaffold_337:109154..110775-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060212 ID=TCONS_00060212|Name=TCONS_00060212|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at scaffold_337:109154..110775- (Clytia hemisphaerica)
TTGAAGAAATACAATGATGTCATCAAATTTGGAAGCCCTTCAAAAGAAAC
AAAGACGGCTGTAGAATTTCCGTATCTGCCAGTTCCTGAACCAAAAGGTC
AGCCAGATGCACCCATAATCAATATTAGCGACATCACCATTATCTGTGAC
ATTGTATCAATTATAAGGCATTCATTAATATTGATAACCGTCCAGTTGTA
AGTGTGCAGCTTCCTTACAAGAGTGATCCTGTCAACAAAAAAGATTGTTG
GGCTAATATGACTCAACTGGTGCAATGCCATTGGCTCTTTGGGGTGATTT
AGTAAATCAAGTGGAGAGTAGTGGAACCTATCGTGTTATCAACGCTAAAG
TGAAGTCTGGGTATGGCAAGTTGTCTCTAACCACTAATTCTTCAACCAAA
ATTTACAATGATAACACTGCTGTAGCCCCATCCCCATTTTACCAACTAAT
CAGAAAACATATCAGCTGTCAAGTTTCCACCCATCAGAGTGATCAATTTG
CAACGCAGGTATTACTGTACTTCATGTAATAAATTCAAAGATTCTACATC
ANACGCAGGTATTACTGTACTTCATGTAATAAATTCAAAGATTCTACATC
ACCAAATCCAAACTTATTTTCTTGCTCATCATGTAAATCTAATTTCTCAA
CCGTACGCATGAAAAAGAAAGTTAGTACTCTGTTAGAATTTGAGGATGAT
CATGAATCGGTCAAAGTTAGGTTTGGAAGAAGCCAGGTGGAGGAATACTT
TAAAAGATTTGGCTCTGCCGTGCCCCGTGATGTTGATGACATCAGTATTG
CCCTACTGCAGGACTGTAACTCTATCATGCTTTATGATGCACAAAATTAT
TGTATTGGGTTTAAGTAAACTTACTCCCTTGCTGTGAGACGTATAAATTT
ANNNNNNNNNNNNNAGTATTGCCCTACTGCAGGACTGTAACTCTATCATG
CTTTATGATGCACAAAATTATTGTATTGGGTTTAAGTAAACTTACTCCCT
TGCTGTGAGACGTATAAATTTATAGAACTGTCAGAATTGAAATTTTAATC
TTGATCTTTTTATGACTTGGAGGTAAATTAAATACCATTCAGTTCTACTG
TTACATTGTTATTTTTTGTTCTCTTTTGATGTTTGAAGGTGTGGTTATTA
AGTTTTATCTTCACTCAGTCTTCTGAACTTTGAAAAGAATCAATTTATAA
TTATTCTTATAAGAGTATGGGCTATGATGAGAATGTTTGTCCATATGTTA
AAAACTTTGAAATCAAATTATAATTGTTCTTATAAAAGTATGGGCTATGA
ACGGAATGTGAATGTGTGTCGATTTGTTGTTTTTTCTATTTTGTTCTGCC
CTATATTTCAGCTATCCTGTGGCACTGTTTTGGCCAATCTAACTTGCCAG
CTTTGAGAATAGACCAGTATTTAGCTTCCTTGACTTGCCTTTCTCAATCA
TATACTTTGCTTCTGCTCTTCTTAATTTGTATTTTCATATTCTAAGCGTA
TATAGATTTTAATATATTTTCATGGATACTACTTCATATTTTAAACTGTA
TAATAACTTAAAAAACAAACTCTTCAGATTTTCCTGCTCTTTTGTATTTG
ATGTTCTATGAATTTATGTGGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037877	XLOC_037877	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060212-exon-scaffold_337-1575043694:109154..110775	TCONS_00060212-exon-scaffold_337-1575043694:109154..110775	Clytia hemisphaerica	exon
TCONS_00060212-exon-scaffold_337-1510915933:109154..110775	TCONS_00060212-exon-scaffold_337-1510915933:109154..110775	Clytia hemisphaerica	exon
TCONS_00060212-exon-scaffold_337-1491911889:109154..110775	TCONS_00060212-exon-scaffold_337-1491911889:109154..110775	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_337	supercontig	scaffold_337:109154..110775 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.673671	0.479618	0.315146	0.199519	1.12292	1.14517	0.904166	1.54517	1.6647	1.02737	1.40345	2.48831	3.4552	3.19931	4.56354	3.96726	3.05104	2.99036	5.38976	6.65457	6.22233	7.78137	3.24825	4.4801	1.58743	3.37008	7.49866	8.19189	8.07089	6.64272

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060212 vs. Swiss-Prot (Human)

BLAST of TCONS_00060212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00060212 (transcript) - C. hemisphaerica