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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060213 ID=TCONS_00060213|Name=TCONS_00060213|organism=Clytia hemisphaerica|type=transcript|length=1958bp
tccgccaaattaaattcccgccaaaattaattttttctctaatccgccaa
attaaattccctctaaaaggACTTTTTCgcccatccaccaaattaaattt
ccgccaaaatttgttcgaataaggtataaaaaatgtcatttcattattgg
ttttctcaaatttgagAGGGCACAGCAAACAATGACAATGTCATTCAAAT
GTGGTAACAAACTTATTTGAActtcatttgataaaatttggaaAGTTTTC
ACCCTACGAATGACCTGTTCAACCAAAATCCGAACTTTAGCAATGTGAGC
TGTCTTTTTAAGTTGCGCTTCAGTCATTTGGGAAGTACCGCGTCTTCCAG
GTGGAATAATTAGATGTATGCTTTTTTGAGCACACTCTTGTTCAATATTA
AAACCTTTATCTGTCATAAGACTACAGTATGGGGGTAGAGTGTCCAGGAA
CTCAGTCTCATTTACAATAGCCTTGTCTGATATTCTTCCGGTGTAGGGCT
CTGAAACATAACTGATCAAAGAGTTGGGTAAGACACTAATTAAGATTTTT
GCAGTGTTGTGATGTTTATATTCACTCCAAGTTGCACTTTGTAGTTCTAA
ACTTTTTGgagtttcaataaaaacttcGGTACAGTCTATGATACCATTTA
ATCTATGAAACCCTCTGAACCGTGATGGCGTGGTGTTTCGTATATTTTCC
TCCTCAGGGAGATAAATCAATGATCTCAAACACAATGACAGGGCTCTTAT
CCAGCTCTGAAAAATTTTGGACGCACAGCTCTTCGATACTCCAAACCGGT
CACCAAGGTCCTCAAAAAGTAATCCCAATCTCAGCTTCATTAGTGTCAAC
AGCAATTCATCGACAGAATTTAATTTTCGATCAGGCCCAGGCTTTTTTGG
TGTGTGTACTTTGTTGAAAGGATTGGCAAGAGTTCTTTTCTTTGCGTAAA
ACCGACTACGTACAAAACCTTTGACGTTATTATGCAATTGATGAAACAGC
TCCAGGTTGGTTATGTTGGtgtaaaaaagacattttttattgtttttcaa
taaagttTCAAACAAAGGTTTCACCACTGGACTATTAGCTGCACTGACAG
TTTTCATTGAATTAtgcatttttgtctttttgatgCTTGAACGAATTGAT
TTGTTGATTCTTTTAATACATTCTGGAGTTTTTTTGGTGATTATTAAATC
AACATTTGATTCAAGTTCATTGGGTAACATCGATGTAGTTGTTGAAGCTT
TAGGATGATGAGGTTGGTGAACTGGTGTAGACAACATATTTTTTGACATA
ATAGATGCTGTTGGAGTTTCCCTTACAGTAAGAGTAGATTGAGCAGTATC
CTTTTTGGGATTTGGTAAAGTTATTTTAATGACAGATGATGACAAACGTT
GTTTTTGTTGTAGTCGTGATGAAGTAGTCGTTGATGATGATCCTTCGCCA
CCAGCTGCTGTTATATTATGATTGTTAGAAGACTTTCTCTTTCTGCTGAT
AGCTGTTGTTGATGGTGGAGACAAAAATAAAGCTCGCTTTTCTGCACCAT
CATATCCCATGGATAGTACTGGAAGAGGGTTATCAGAAGAAGGTTCACCG
TCTTTGAAATGGATGGAACACACACGTGCATTTCTGCCTGGTTCAAAAAA
TCCTTTAGTAGTATCATCAGCACGATTAATCACCTTAATCCACTTCATTC
TTAGCTCATAATCTTTCTTTACAGTAGGAAATGGATGTAGCTTGAAAGGA
GGGTCACAGTTACAAAGTTCATGAATCTGTCGATGCTCTTCACACTGTAA
ACTCTTCCACTTGTTAAGTCTATAACTTCCATTGCTGCAGCCAATAACAA
CACAACAAAGAGCCATAATATCTATCTCCTCTCCTTTCTCATGTATTGTG
AGCTCAGTctcaaaaaaaataacaaaatggcTTTCTTGAGTCCAGAATAT
GAGTGAAA Run BLAST on NCBI protein sequence of TCONS_00060213-protein >TCONS_00060213-protein ID=TCONS_00060213-protein|Name=TCONS_00060213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
SLIFWTQESHFVIFFETELTIHEKGEEIDIMALCCVVIGCSNGSYRLNKW
KSLQCEEHRQIHELCNCDPPFKLHPFPTVKKDYELRMKWIKVINRADDTT
KGFFEPGRNARVCSIHFKDGEPSSDNPLPVLSMGYDGAEKRALFLSPPST
TAISRKRKSSNNHNITAAGGEGSSSTTTSSRLQQKQRLSSSVIKITLPNP
KKDTAQSTLTVRETPTASIMSKNMLSTPVHQPHHPKASTTTSMLPNELES
NVDLIITKKTPECIKRINKSIRSSIKKTKMHNSMKTVSAANSPVVKPLFE
TLLKNNKKCLFYTNITNLELFHQLHNNVKGFVRSRFYAKKRTLANPFNKV
HTPKKPGPDRKLNSVDELLLTLMKLRLGLLFEDLGDRFGVSKSCASKIFQ
SWIRALSLCLRSLIYLPEEENIRNTTPSRFRGFHRLNGIIDCTEVFIETP
KSLELQSATWSEYKHHNTAKILISVLPNSLISYVSEPYTGRISDKAIVNE
TEFLDTLPPYCSLMTDKGFNIEQECAQKSIHLIIPPGRRGTSQMTEAQLK
KTAHIAKVRILVEQVIRRVKTFQILSNEVQISLLPHLNDIVIVCCALSNL
RKPIMK Run BLAST on NCBI transcript from alignment at scaffold_337:789..2746 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060213 ID=TCONS_00060213|Name=TCONS_00060213|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at scaffold_337:789..2746 (Clytia hemisphaerica)
TTTCACTCATATTCTGGACTCAAGAAAgccattttgttattttttttgag
ACTGAGCTCACAATACATGAGAAAGGAGAGGAGATAGATATTATGGCTCT
TTGTTGTGTTGTTATTGGCTGCAGCAATGGAAGTTATAGACTTAACAAGT
GGAAGAGTTTACAGTGTGAAGAGCATCGACAGATTCATGAACTTTGTAAC
TGTGACCCTCCTTTCAAGCTACATCCATTTCCTACTGTAAAGAAAGATTA
TGAGCTAAGAATGAAGTGGATTAAGGTGATTAATCGTGCTGATGATACTA
CTAAAGGATTTTTTGAACCAGGCAGAAATGCACGTGTGTGTTCCATCCAT
TTCAAAGACGGTGAACCTTCTTCTGATAACCCTCTTCCAGTACTATCCAT
GGGATATGATGGTGCAGAAAAGCGAGCTTTATTTTTGTCTCCACCATCAA
CAACAGCTATCAGCAGAAAGAGAAAGTCTTCTAACAATCATAATATAACA
GCAGCTGGTGGCGAAGGATCATCATCAACGACTACTTCATCACGACTACA
ACAAAAACAACGTTTGTCATCATCTGTCATTAAAATAACTTTACCAAATC
CCAAAAAGGATACTGCTCAATCTACTCTTACTGTAAGGGAAACTCCAACA
GCATCTATTATGTCAAAAAATATGTTGTCTACACCAGTTCACCAACCTCA
TCATCCTAAAGCTTCAACAACTACATCGATGTTACCCAATGAACTTGAAT
CAAATGTTGATTTAATAATCACCAAAAAAACTCCAGAATGTATTAAAAGA
ATCAACAAATCAATTCGTTCAAGcatcaaaaagacaaaaatgcaTAATTC
AATGAAAACTGTCAGTGCAGCTAATAGTCCAGTGGTGAAACCTTTGTTTG
AaactttattgaaaaacaataaaaaatgtcttttttacaCCAACATAACC
AACCTGGAGCTGTTTCATCAATTGCATAATAACGTCAAAGGTTTTGTACG
TAGTCGGTTTTACGCAAAGAAAAGAACTCTTGCCAATCCTTTCAACAAAG
TACACACACCAAAAAAGCCTGGGCCTGATCGAAAATTAAATTCTGTCGAT
GAATTGCTGTTGACACTAATGAAGCTGAGATTGGGATTACTTTTTGAGGA
CCTTGGTGACCGGTTTGGAGTATCGAAGAGCTGTGCGTCCAAAATTTTTC
AGAGCTGGATAAGAGCCCTGTCATTGTGTTTGAGATCATTGATTTATCTC
CCTGAGGAGGAAAATATACGAAACACCACGCCATCACGGTTCAGAGGGTT
TCATAGATTAAATGGTATCATAGACTGTACCgaagtttttattgaaactc
CAAAAAGTTTAGAACTACAAAGTGCAACTTGGAGTGAATATAAACATCAC
AACACTGCAAAAATCTTAATTAGTGTCTTACCCAACTCTTTGATCAGTTA
TGTTTCAGAGCCCTACACCGGAAGAATATCAGACAAGGCTATTGTAAATG
AGACTGAGTTCCTGGACACTCTACCCCCATACTGTAGTCTTATGACAGAT
AAAGGTTTTAATATTGAACAAGAGTGTGCTCAAAAAAGCATACATCTAAT
TATTCCACCTGGAAGACGCGGTACTTCCCAAATGACTGAAGCGCAACTTA
AAAAGACAGCTCACATTGCTAAAGTTCGGATTTTGGTTGAACAGGTCATT
CGTAGGGTGAAAACTttccaaattttatcaaatgaagTTCAAATAAGTTT
GTTACCACATTTGAATGACATTGTCATTGTTTGCTGTGCCCTctcaaatt
tgagaaaaccaataatgaaatgacattttttataccttattcgaacaaat
tttggcggaaatttaatttggtggatgggcGAAAAAGTccttttagaggg
aatttaatttggcggattagagaaaaaattaattttggcgggaatttaat
ttggcgga Coding sequence (CDS) from alignment at scaffold_337:789..2746 >TCONS_00060213 ID=TCONS_00060213|Name=TCONS_00060213|organism=Clytia hemisphaerica|type=CDS|length=1821bp|location=Sequence derived from alignment at scaffold_337:789..2746 (Clytia hemisphaerica)
TCACTCATATTCTGGACTCAAGAAAgccattttgttattttttttgagAC
TGAGCTCACAATACATGAGAAAGGAGAGGAGATAGATATTATGGCTCTTT
GTTGTGTTGTTATTGGCTGCAGCAATGGAAGTTATAGACTTAACAAGTGG
AAGAGTTTACAGTGTGAAGAGCATCGACAGATTCATGAACTTTGTAACTG
TGACCCTCCTTTCAAGCTACATCCATTTCCTACTGTAAAGAAAGATTATG
AGCTAAGAATGAAGTGGATTAAGGTGATTAATCGTGCTGATGATACTACT
AAAGGATTTTTTGAACCAGGCAGAAATGCACGTGTGTGTTCCATCCATTT
CAAAGACGGTGAACCTTCTTCTGATAACCCTCTTCCAGTACTATCCATGG
GATATGATGGTGCAGAAAAGCGAGCTTTATTTTTGTCTCCACCATCAACA
ACAGCTATCAGCAGAAAGAGAAAGTCTTCTAACAATCATAATATAACAGC
AGCTGGTGGCGAAGGATCATCATCAACGACTACTTCATCACGACTACAAC
AAAAACAACGTTTGTCATCATCTGTCATTAAAATAACTTTACCAAATCCC
AAAAAGGATACTGCTCAATCTACTCTTACTGTAAGGGAAACTCCAACAGC
ATCTATTATGTCAAAAAATATGTTGTCTACACCAGTTCACCAACCTCATC
ATCCTAAAGCTTCAACAACTACATCGATGTTACCCAATGAACTTGAATCA
AATGTTGATTTAATAATCACCAAAAAAACTCCAGAATGTATTAAAAGAAT
CAACAAATCAATTCGTTCAAGcatcaaaaagacaaaaatgcaTAATTCAA
TGAAAACTGTCAGTGCAGCTAATAGTCCAGTGGTGAAACCTTTGTTTGAa
actttattgaaaaacaataaaaaatgtcttttttacaCCAACATAACCAA
CCTGGAGCTGTTTCATCAATTGCATAATAACGTCAAAGGTTTTGTACGTA
GTCGGTTTTACGCAAAGAAAAGAACTCTTGCCAATCCTTTCAACAAAGTA
CACACACCAAAAAAGCCTGGGCCTGATCGAAAATTAAATTCTGTCGATGA
ATTGCTGTTGACACTAATGAAGCTGAGATTGGGATTACTTTTTGAGGACC
TTGGTGACCGGTTTGGAGTATCGAAGAGCTGTGCGTCCAAAATTTTTCAG
AGCTGGATAAGAGCCCTGTCATTGTGTTTGAGATCATTGATTTATCTCCC
TGAGGAGGAAAATATACGAAACACCACGCCATCACGGTTCAGAGGGTTTC
ATAGATTAAATGGTATCATAGACTGTACCgaagtttttattgaaactcCA
AAAAGTTTAGAACTACAAAGTGCAACTTGGAGTGAATATAAACATCACAA
CACTGCAAAAATCTTAATTAGTGTCTTACCCAACTCTTTGATCAGTTATG
TTTCAGAGCCCTACACCGGAAGAATATCAGACAAGGCTATTGTAAATGAG
ACTGAGTTCCTGGACACTCTACCCCCATACTGTAGTCTTATGACAGATAA
AGGTTTTAATATTGAACAAGAGTGTGCTCAAAAAAGCATACATCTAATTA
TTCCACCTGGAAGACGCGGTACTTCCCAAATGACTGAAGCGCAACTTAAA
AAGACAGCTCACATTGCTAAAGTTCGGATTTTGGTTGAACAGGTCATTCG
TAGGGTGAAAACTttccaaattttatcaaatgaagTTCAAATAAGTTTGT
TACCACATTTGAATGACATTGTCATTGTTTGCTGTGCCCTctcaaatttg
agaaaaccaataatgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060213-exon-scaffold_337-1491911889:789..2746 | TCONS_00060213-exon-scaffold_337-1491911889:789..2746 | Clytia hemisphaerica | exon |
| TCONS_00060213-exon-scaffold_337-1510915933:789..2746 | TCONS_00060213-exon-scaffold_337-1510915933:789..2746 | Clytia hemisphaerica | exon |
| TCONS_00060213-exon-scaffold_337-1575043694:789..2746 | TCONS_00060213-exon-scaffold_337-1575043694:789..2746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_337 | supercontig | scaffold_337:789..2746 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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