TCONS_00060220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060220
Unique NameTCONS_00060220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060220 ID=TCONS_00060220|Name=TCONS_00060220|organism=Clytia hemisphaerica|type=transcript|length=506bp
catcaGTGTATGACCCAATTTTTGCTCTTTTTAGGCCCTAAATCTGAGGg
gtaaattactcaaaaaaatcacgtacactttccgaaaaaatcattaaaaa
atcaaaagNCAGTGTATGACCCAATTTTTGCTCTTTTTAGGCCCTAAATC
CGAGGggtaaattactcaaaaaaatcacgtacactttccgaaaaaatcat
taaaaaatcaaaaaaactcgTACACCTTCTTTTGAGTAATTTACCCCTCA
CCTAAATCGgtgtttttgctgatttgacCTCGATTTTATCTTCTAAATAT
CcagcaaccgccaaattaaatttttcgttcatccgccaaattaataTCCG
TTTTTTTGGGTAAAATCAGCTTGAAATCGGGCCGTTTTTAGGTAACTCAG
ATGgtcaaaattgaattttctaCTGTTggtgcaaaccatggttgcgcctc
ctttaATCACTATTAACATTGGTTTGGCCCCATCCACTTTCGAAATCAAG
ACGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_337:101630..102135

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060220 ID=TCONS_00060220|Name=TCONS_00060220|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_337:101630..102135 (Clytia hemisphaerica)
CCACGTCTTGATTTCGAAAGTGGATGGGGCCAAACCAATGTTAATAGTGA
TtaaaggaggcgcaaccatggtttgcaccAACAGtagaaaattcaatttt
gacCATCTGAGTTACCTAAAAACGGCCCGATTTCAAGCTGATTTTACCCA
AAAAAACGGAtattaatttggcggatgaacgaaaaatttaatttggcggt
tgctgGATATTTAGAAGATAAAATCGAGgtcaaatcagcaaaaacacCGA
TTTAGGTGAGGGGTAAATTACTCAAAAGAAGGTGTAcgagtttttttgat
tttttaatgattttttcggaaagtgtacgtgatttttttgagtaatttac
cCCTCGGATTTAGGGCCTAAAAAGAGCAAAAATTGGGTCATACACTGNct
tttgattttttaatgattttttcggaaagtgtacgtgatttttttgagta
atttaccCCTCAGATTTAGGGCCTAAAAAGAGCAAAAATTGGGTCATACA
Ctgatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037886XLOC_037886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060220-exon-scaffold_337-1491911889:101630..102135TCONS_00060220-exon-scaffold_337-1491911889:101630..102135Clytia hemisphaericaexon
TCONS_00060220-exon-scaffold_337-1510915933:101630..102135TCONS_00060220-exon-scaffold_337-1510915933:101630..102135Clytia hemisphaericaexon
TCONS_00060220-exon-scaffold_337-1575043694:101630..102135TCONS_00060220-exon-scaffold_337-1575043694:101630..102135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_337supercontigscaffold_337:101630..102135 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238907	0.232972	0	0	0.80545	0.127295	0.153577	0.43133	0	0	0	0.0795555	0	0.165009	0.135659	0	0.0896734	0	0	0	0.346484	0.507008	0	0	0	0.114462	0	0.174806	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top