TCONS_00060254 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060254
Unique Name	TCONS_00060254
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1291

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_339:328528..340860+
coding sequence from alignment at scaffold_339:328528..340860+

transcript sequence

>TCONS_00060254 ID=TCONS_00060254|Name=TCONS_00060254|organism=Clytia hemisphaerica|type=transcript|length=1291bp
tgaaagtttcaataaGAATTGAGATTATAAAAATCACGGATTTAGAGAAA
TTAGAGTAATAACATTGAAGCTAAGAGCCAAAACATTGCGTACAGAAGAG
ATAAGAATGATGAAGGGATTTGTTGCTTTCAGAATTTTGTTGGTTTTCGT
GGTAGCAGTGTGGTGTGTGTGCAGCGAAAAACAGGAATGTCGAGCTCGTT
GTAAGGATGGGCGCGACGGAAGGAACGGGCGGAATGGAGTTGATGGCGTG
GACGGAAGAAACGGAGTTGACGGGTTTTGTGGAAAACATGGGATCAATGG
AACAAACGGAATCGACGGAAAAGATGGGCAGAATGGAAAAGATGGAAAAG
ACGGTAAAGATGGAAGGAACGGAAAGGATGGAAAGAATGGAAAAGATGGA
AAAGATATCACTCGAAAGAGAAATTGGAAAGAATGTGCTTGGGACAATAT
CAGTGATGGAAGGGATAACGGACTCATTAAAACATGCAGTTTCTCAAAGT
CAGAACAATCAACATACCTGTACGTTCAAGTGTCGTCCAACATGCGAATT
GTAAACTGCGATAACTGTTGCAAACGCTGGTTCATAACATTCGACGGAAA
AGAATGCACTCCCGTCGCCATCGACGGCGTTGTCTACATGAGATGGGGCA
AGGGAAACCGATACAAGAACCTCCTGCGACCACGAGTCATCGCTGGACAT
TGTAAAATCAACAAGAGCGGGAGAATCAATGTCGGTTTCAACGTCGGCAA
TTGCCAAGGTTACAATTCGAATGTAGATGCCAACACTGGATGGAATTCCG
CCACTAGAATCCACATCTACGAGATGGAGCCTCCGCAACAATAAACAcat
cattttatcatatttcACAACAATTTCATATTACTATACTATTTCTAAGT
AATTTATTGCAACTTTTGTTTAATACTTCGAAATGATGAATACTAAAATG
AGAAGTATATGCCAAAACTATGGGGTGCCCTATGtgcaaaagtaaattta
aaggCTTGTGAAAATATTAGCTTTTCGGGTAGCAAAGTGGCATCCTTTTC
GGGTAGTAAACATAATTTCTTTTGGGTAgcacattttaaaattttcgggt
AGCAAATTCTTAATTTCTTTCGGGTAGcaaattctcaaattttcgtGCAG
caaattctcaaattttcgtCTAGcaaattctcaaattttcgtGTAacaaa
ttcttaaatttttgtgtagcaaatttcatatttttcgtatagcaaatttc
caatttttcgggtaataaattttcaaattttcgagtagcaa

Run BLAST on NCBI

protein sequence of TCONS_00060254-protein

>TCONS_00060254-protein ID=TCONS_00060254-protein|Name=TCONS_00060254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MMKGFVAFRILLVFVVAVWCVCSEKQECRARCKDGRDGRNGRNGVDGVDG
RNGVDGFCGKHGINGTNGIDGKDGQNGKDGKDGKDGRNGKDGKNGKDGKD
ITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVN
CDNCCKRWFITFDGKECTPVAIDGVVYMRWGKGNRYKNLLRPRVIAGHCK
INKSGRINVGFNVGNCQGYNSNVDANTGWNSATRIHIYEMEPPQQ

Run BLAST on NCBI

transcript from alignment at scaffold_339:328528..340860+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060254 ID=TCONS_00060254|Name=TCONS_00060254|organism=Clytia hemisphaerica|type=transcript|length=12333bp|location=Sequence derived from alignment at scaffold_339:328528..340860+ (Clytia hemisphaerica)
tgaaagtttcaataaGAATTGAGATTATAAAAATCACGGATTTAGAGAAA
TTAGAGTAATAACATTGAAGCTAAGAGCCAAAACATTGCGTACAGAAGAG
ATAAGAATGATGAAGGGATTTGTTGCTTTCAGAATTTTGTTGGTTTTCGT
GGTAGCAGTGTGGTGTGTGTGCAGCGAAAAACAGGTAATTCGACACACTT
TATTTCGCATTAACAAATACTAAGTACAAGAGGCTGAAATTCTTCGCTAA
ACATGATaggatcccggggggggggcactagggttggcggatgaggggta
tgtgcagatgggacctccgaaaaccgacccttagagagactgatttttgc
tgaaaaggtgacccttagagagactttttgaaaattttttttcgattttt
gaaaaaagtcaaacccttagagagactttattacaacttttttttgattt
ttgaaaaaagtcatacccttagagagactttattacaattttttctctgg
aaataaaaaaaaattctaaaaatcctgaattttccgacccttagagagac
tttgaaaggtgaaaaaaccgacccttaccgtccacaCATAcacatcatcc
atttttgcctaagtaccccccgggACAGGATATTAAACTCGTCTCGATTA
TCAACTGAGATTACAAAACCGACGTCAAACGACATATTTTGCCATCCACT
ACCCCGACcgaaattttcttggtcgggccttctatagatctcattttaaa
atataaaagaaacagtgcaaacagttttattcatctgccatttatccttg
taacttccaTTGTCTTTAGCAGTTACTtgctagtcttcaaaataaagtcg
aatgctatgagagggttgaaaattgaaaacttttcccgccggcgcaaacc
atggttgcgcttcctccgtaactaacattttcctctctttcttagatgct
tattcttagATGCATCAAAGACATCAGGTCCTTTCCCTCAAGCCGGGGCC
CTTTGATTCAGGGCCCGCGccacgattttgaaagtgagggggccaacaaa
aatttagtgactaaggaggcgcaaccatggtttgcactgacgggccggaa
aattttcgattttgacctgtCTTACCAGGGTTTGGTCTTACATAAAACag
cttcctttttgttctgatttcctgaaagaaaactgttaagtttgtttgtt
taaaacaaaagagtATAATTAGACTTATTTAAGTGTCCATCTGTCCCCTT
TTAGAAAGGTtctaacgtttttattggcacgcgcacagaaaaaaaaaaaa
caagacgactagaagtcgaaaatttcgccttaaaTAAGACAAGaatagaa
catttttgaaatccttGGAGAACAATACacataattaaaacttgaagagG
AATGCGGAAAATTAATAAGATAAACCTATTTTGAGTGCGTTAAGAGCGAA
AGGCaaggtaaaattttacgtaatttccggtcgaaaatatccaatatttt
gaattcgaaaagaCAAAATTCAAGATTCCAAGCAATCCGTAGGAAAGTTT
TCTTTCATTCTAGCCGAAAATCTGCTTTCGTTTTTTAATGAGCAGGAAAA
TACAGGTTGGTACAGGGGCAAAAACGGGTAACTTNtttcattttttaatg
agcAGGAAAATAAAGGTTGGTACAGGGGCAAAAACGGGTAAATTGAGTCT
CGATCTTatgaatctaaaaattatatttccaagTATTCGTAATTCCAAAA
TTTCGATAGTTCATAGTTCATAGAAAATAGCTAGCAATTTACANNNNNNN
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GTCAGACataacaaatcattttcatacaaaaatctgtcctTTTGAATATC
AACTGCATGTCGTTTTAAAGATCTTACATTCAATAGGCTAACATTTAAAT
TAGAACTGCACCTCATAATATCTGCAACTCTTTCAACTTTGTTCTGACGC
AATCGTGTGTATTCTGCACTAACTTTATTACTACAGACAAAAGCACTACG
TCGATATTGACCAGTAAAGTACaaaccatttaaatttttcactcTGCTCA
TTGCAACATACATTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNCTGATAAGCCACCTGTATCGTTAAGTGGCAGGTTCTTA
ACCTTGGTAATTTGAGATTCAGTAAAATCCCTTGGATAAACGTCCATAGC
TTCTACATTTATTGTTTCAGAGGGCAGAGTATCTAATCTTTGAACATTGT
GAAGATGGACTGAAGCATTTTCTGCAAACAAATGCAATGATTCTATTGGA
TAATCAGGGTGTTCTTGTGTTATCAGTCTAGATTTAATCATACTTTCATC
ATTACTATTCAATTCACCTACTCTTACATTGTTCAAGAGATCAATGAAGT
CAGAGTCATCCTTTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNAAATTTAGATCCCCTTGATTCAAAACATAA
TCTAAATCATGAGTCTTCCAAAGTGATAATTTTCTGAGCTGTGCATAGCA
AATGGCAAAAAAACAATTGGATGAACACTGTATACCAGCAGTCTCGCCAA
ACTTTGAATTTCCTTGATGAAATGAACCTTGAATACTTTTTATCTCTTCC
TGTGGTGGACCTGGATTAAGTTCTATATCACCTGACAATAGTAATGTATA
GTTGACTTTAAAAGTAATAAGAACTGGCTCTGGTAAATTATACCCTGCAC
TATTTGGATACTGAACAAACGTTCCATTCCTTGAAAAATGCATAAGGTCA
AGAGGTGTTTGAATTTCAACTGTTTCGTAAGACTTAGGGattgcaaaaaa
taaaagtgtAAAAAGTGCTATGAATCTAACGGGTTTCAATAATCTAGAAA
aagcatttttagaaaatttggagCCGATAAAAATGGACTTAGAAATTGAC
TTTACATTTCTCTGAGCTGTGTAGGCAAAGCCTCCTATCAACGCACGGTA
TGATTCAATGGAtatcatttcaaaaataaaaaactatatGTAAATCTCTG
AGACTCAAATATTTTCTAATGTATCTAAATAAGATATTTGTAAAAGCTGA
CAATGCAGCTTGGTATTGTAATCACTGACAATGCAAGNNNNNNNNNNNNN
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CCGAATAAAAACGCCCACACGCCATTATTTCGCCCGAAAAATTTTCTCGC
CAcacagaaaggctatcgtaatactttcgctaggcgaaattaaaaattag
gTGAAGagaagttttttattttgatttgcaaaaaaaaagttgtgATGTGA
CACACCAGTTGTCAAACAAAAGAACTATATAAACCTAAGtgttcaaattt
tctttgaaaaaactgGTTATAAGCTTATTCATTTAACACTTTTTGAATAA
GTCTTACAGCTTTTGAAATTCATCATGAGACAAGtcgtctttttttcttt
ttaaaatacatAGTGAAcgaatttaaaagttttatttatcGCAGGAATGT
CGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGAACGGGCGGAATGGAGT
TGATGGCGTGGACGGAAGAAACGGAGTTGACGGGTTTTGTGGAAAACATG
GGATCAATGGAACAAACGGAATCGACGGAAAAGATGGGCAGAATGGAAAA
GATGGAAAAGACGGTAAAGATGGAAGGAACGGAAAGGATGGAAAGAATGG
AAAAGATGGAAAAGATATCACTCGAAAGAGAAATTGGAAAGAATGTGCTT
GGGACAATATCAGTGATGGAAGGGATAACGGACTCATTAAAGTAAActtc
ttttttcttaaatttttcaaagGCATATATCATTCTTACACAATTCTCCT
TCTTCTTTGTGCCAAAAGTGCTCGATGATATCTCACAGCTGTTCAAGTTG
TTGGTATttcatgaaacttaaagtttaACGAAGCCGTTCACACGGACGAC
AAATTTCTGGCGTAAAGAAAAGGATAAGAATGCGAGAGCAACATTCTGAA
AATGATGTAATTCATTTCTTTAGACATGCAGTTTCTCAAAGTCAGAACAA
TCAACATACCTGTACGTTCAAGTGTCGTCCAACATGCGAATTGTAAACTG
CGATAACTGTTGCAAACGCTGGTTCATAACATTCGACGGAAAAGAATGCA
CTCCCGTCGCCATCGACGGCGTTGTCTACATGAGATGGGGCAAGGGAAAC
CGATACAAGAACCTCCTGCGACCACGAGTCATCGCTGGACATTGTAAAAT
CAACAAGAGCGGGAGAATCAATGTCGGTTTCAACGTCGGCAATTGCCAAG
GTTACAATTCGAATGTAGATGCCAACACTGGATGGAATTCCGCCACTAGA
ATCCACATCTACGAGATGGAGCCTCCGCAACAATAAACAcatcattttat
catatttcACAACAATTTCATATTACTATACTATTTCTAAGTAATTTATT
GCAACTTTTGTTTAATACTTCGAAATGATGAATACTAAAATGAGAAGTAT
ATGCCAAAACTATGGGGTGCCCTATGtgcaaaagtaaatttaaaggCTTG
TGAAAATATTAGCTTTTCGGGTAGCAAAGTGGCATCCTTTTCGGGTAGTA
AACATAATTTCTTTTGGGTAgcacattttaaaattttcgggtAGCAAATT
CTTAATTTCTTTCGGGTAGcaaattctcaaattttcgtGCAGcaaattct
caaattttcgtCTAGcaaattctcaaattttcgtGTAacaaattcttaaa
tttttgtgtagcaaatttcatatttttcgtatagcaaatttccaattttt
cgggtaataaattttcaaattttcgagtagcaa

Coding sequence (CDS) from alignment at scaffold_339:328528..340860+

>TCONS_00060254 ID=TCONS_00060254|Name=TCONS_00060254|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_339:328528..340860+ (Clytia hemisphaerica)
ATGATGAAGGGATTTGTTGCTTTCAGAATTTTGTTGGTTTTCGTGGTAGC
AGTGTGGTGTGTGTGCAGCGAAAAACAGGAATGTCGAGCTCGTTGTAAGG
ATGGGCGCGACGGAAGGAACGGGCGGAATGGAGTTGATGGCGTGGACGGA
AGAAACGGAGTTGACGGGTTTTGTGGAAAACATGGGATCAATGGAACAAA
CGGAATCGACGGAAAAGATGGGCAGAATGGAAAAGATGGAAAAGACGGTA
AAGATGGAAGGAACGGAAAGGATGGAAAGAATGGAAAAGATGGAAAAGAT
ATCACTCGAAAGAGAAATTGGAAAGAATGTGCTTGGGACAATATCAGTGA
TGGAAGGGATAACGGACTCATTAAAACATGCAGTTTCTCAAAGTCAGAAC
AATCAACATACCTGTACGTTCAAGTGTCGTCCAACATGCGAATTGTAAAC
TGCGATAACTGTTGCAAACGCTGGTTCATAACATTCGACGGAAAAGAATG
CACTCCCGTCGCCATCGACGGCGTTGTCTACATGAGATGGGGCAAGGGAA
ACCGATACAAGAACCTCCTGCGACCACGAGTCATCGCTGGACATTGTAAA
ATCAACAAGAGCGGGAGAATCAATGTCGGTTTCAACGTCGGCAATTGCCA
AGGTTACAATTCGAATGTAGATGCCAACACTGGATGGAATTCCGCCACTA
GAATCCACATCTACGAGATGGAGCCTCCGCAACAATAAATGATGAAGGGA
TTTGTTGCTTTCAGAATTTTGTTGGTTTTCGTGGTAGCAGTGTGGTGTGT
GTGCAGCGAAAAACAGGAATGTCGAGCTCGTTGTAAGGATGGGCGCGACG
GAAGGAACGGGCGGAATGGAGTTGATGGCGTGGACGGAAGAAACGGAGTT
GACGGGTTTTGTGGAAAACATGGGATCAATGGAACAAACGGAATCGACGG
AAAAGATGGGCAGAATGGAAAAGATGGAAAAGACGGTAAAGATGGAAGGA
ACGGAAAGGATGGAAAGAATGGAAAAGATGGAAAAGATATCACTCGAAAG
AGAAATTGGAAAGAATGTGCTTGGGACAATATCAGTGATGGAAGGGATAA
CGGACTCATTAAAACATGCAGTTTCTCAAAGTCAGAACAATCAACATACC
TGTACGTTCAAGTGTCGTCCAACATGCGAATTGTAAACTGCGATAACTGT
TGCAAACGCTGGTTCATAACATTCGACGGAAAAGAATGCACTCCCGTCGC
CATCGACGGCGTTGTCTACATGAGATGGGGCAAGGGAAACCGATACAAGA
ACCTCCTGCGACCACGAGTCATCGCTGGACATTGTAAAATCAACAAGAGC
GGGAGAATCAATGTCGGTTTCAACGTCGGCAATTGCCAAGGTTACAATTC
GAATGTAGATGCCAACACTGGATGGAATTCCGCCACTAGAATCCACATCT
ACGAGATGGAGCCTCCGCAACAATAAATGATGAAGGGATTTGTTGCTTTC
AGAATTTTGTTGGTTTTCGTGGTAGCAGTGTGGTGTGTGTGCAGCGAAAA
ACAGGAATGTCGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGAACGGGC
GGAATGGAGTTGATGGCGTGGACGGAAGAAACGGAGTTGACGGGTTTTGT
GGAAAACATGGGATCAATGGAACAAACGGAATCGACGGAAAAGATGGGCA
GAATGGAAAAGATGGAAAAGACGGTAAAGATGGAAGGAACGGAAAGGATG
GAAAGAATGGAAAAGATGGAAAAGATATCACTCGAAAGAGAAATTGGAAA
GAATGTGCTTGGGACAATATCAGTGATGGAAGGGATAACGGACTCATTAA
AACATGCAGTTTCTCAAAGTCAGAACAATCAACATACCTGTACGTTCAAG
TGTCGTCCAACATGCGAATTGTAAACTGCGATAACTGTTGCAAACGCTGG
TTCATAACATTCGACGGAAAAGAATGCACTCCCGTCGCCATCGACGGCGT
TGTCTACATGAGATGGGGCAAGGGAAACCGATACAAGAACCTCCTGCGAC
CACGAGTCATCGCTGGACATTGTAAAATCAACAAGAGCGGGAGAATCAAT
GTCGGTTTCAACGTCGGCAATTGCCAAGGTTACAATTCGAATGTAGATGC
CAACACTGGATGGAATTCCGCCACTAGAATCCACATCTACGAGATGGAGC
CTCCGCAACAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037899	XLOC_037899	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060254-protein	TCONS_00060254-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060254-exon-scaffold_339-1491911889:328528..328711	TCONS_00060254-exon-scaffold_339-1491911889:328528..328711	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1510915933:328528..328711	TCONS_00060254-exon-scaffold_339-1510915933:328528..328711	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1575043694:328528..328711	TCONS_00060254-exon-scaffold_339-1575043694:328528..328711	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1491911889:339522..339818	TCONS_00060254-exon-scaffold_339-1491911889:339522..339818	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1510915933:339522..339818	TCONS_00060254-exon-scaffold_339-1510915933:339522..339818	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1575043694:339522..339818	TCONS_00060254-exon-scaffold_339-1575043694:339522..339818	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1491911889:340051..340860	TCONS_00060254-exon-scaffold_339-1491911889:340051..340860	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1510915933:340051..340860	TCONS_00060254-exon-scaffold_339-1510915933:340051..340860	Clytia hemisphaerica	exon
TCONS_00060254-exon-scaffold_339-1575043694:340051..340860	TCONS_00060254-exon-scaffold_339-1575043694:340051..340860	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_339	supercontig	scaffold_339:328528..340860 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.462341	0.64724	0.336478	0.192586	0.795921	0.279532	5.39537	6.56197	35.6057	15.4969	44.9417	35.6459	7.80622	8.84042	46.9646	37.1913	9.39416	8.46513	2.74062	3.24574	0.310437	0.52166	0.251299	0.280926	2.03166	2.60777	0.449603	0.239914	1.50169	1.49995

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

Blast

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BLAST of TCONS_00060254 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.691e-22
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 2

Query:  422 NWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVNCDNCCKRWFITFDGKECT-PVAIDGVVYMRWGKG--NRYKNLLRPRVIAGHCKINKSGRINVGFNVGNCQGYNSNVDANTGWNSATRIHIYEME 829
            N+K+C+W +++ G D G I  C+F+K   ++ L V  S ++R+   + CC+RW+ TF+G EC+ P+ I+ ++Y+  G    N   N+ R   + G C+   +G ++V   VG C  Y    DA+TGWNS +RI I E+ 
Sbjct:  105 NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKG-DASTGWNSVSRIIIEELP 242

The following BLAST results are available for this feature:

BLAST of TCONS_00060254 vs. Swiss-Prot (Human)

BLAST of TCONS_00060254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTHR1	7.691e-22	35.97	Collagen triple helix repeat-containing protein 1 ...	[more]

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TCONS_00060254 (transcript) - C. hemisphaerica