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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060351 ID=TCONS_00060351|Name=TCONS_00060351|organism=Clytia hemisphaerica|type=transcript|length=916bp
TCGCCAGGTTAGCAGCACTCACGGTCGACAATGAATATCAACAAAATCTT
GACAAGAAGAAACTTGAATATGACCAACTACAGCGAGAGGCAAAGATCGC
AAAGTCTCGAGCTCGACTCCAAGCCTATGAATCTGGGCTAGAATCTGATG
ACCAAGGTGGTATGGACGAAGCTCTCAAAAATCTACCAAAGCAGAACCAA
TTCTCGTTCATTAGAACGTACGCAATCAAATACCACAAGACAGCCCAATC
CCAGAAGAAGATGATCCTCCGATCCTGCCAAGTACCACCGGCCCTCAAAC
CAGCAATAATTCACCATTGCCCTTCATACCAACGACAGGTATAATGTCTT
CAATCTATCACAACCAAGACTTATGCTTACCCAAACGGTCCGACTTATCC
GATACCGTCAAACTCTGGAGTGTTGTCGTCCACTCAACCACCAGCACCTC
AAATGGTTTACAGTTCCACACTACCTAAAGCTACATTACAATCATTTCAT
CCAAACGGTTGGGATCCAGCAACATTAGTGACATCAACTGTCCATAACAT
CAGCCAAGTGCATCCCTCGCCATCCGAACAAAAGACCTCGTTCACCATAC
CGAATCTCACTGAAGTGAAGTCATCAACCTCATCACAAGATCTTGCATCA
ATCGTCAATGAGATGCGGGCTCCTAATGTCGTCATTGAAATATTCAGTGA
AAACGCCAcggattttccatttttcatcaCATCATTTGAGGAGGCTGTCG
AAAAGAAAGTTCCTGATGGGAAGACCAGACTACAACACTTGATGAGTCAT
GTTAATGGAGCCGCCAAGGAGCTTGTCGAATCCTGCATATACCTCCCATC
ACGTGCTAAGGACTTACTGACTGAAAGATATGGTAATCCCTACATTGTCA
ATGCTGAATACAGAAG Run BLAST on NCBI protein sequence of TCONS_00060351-protein >TCONS_00060351-protein ID=TCONS_00060351-protein|Name=TCONS_00060351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MVYSSTLPKATLQSFHPNGWDPATLVTSTVHNISQVHPSPSEQKTSFTIP
NLTEVKSSTSSQDLASIVNEMRAPNVVIEIFSENATDFPFFITSFEEAVE
KKVPDGKTRLQHLMSHVNGAAKELVESCIYLPSRAKDLLTERYGNPYIVN
AEYR Run BLAST on NCBI transcript from alignment at scaffold_340:174667..175582 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060351 ID=TCONS_00060351|Name=TCONS_00060351|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at scaffold_340:174667..175582 (Clytia hemisphaerica)
CTTCTGTATTCAGCATTGACAATGTAGGGATTACCATATCTTTCAGTCAG
TAAGTCCTTAGCACGTGATGGGAGGTATATGCAGGATTCGACAAGCTCCT
TGGCGGCTCCATTAACATGACTCATCAAGTGTTGTAGTCTGGTCTTCCCA
TCAGGAACTTTCTTTTCGACAGCCTCCTCAAATGATGtgatgaaaaatgg
aaaatccgTGGCGTTTTCACTGAATATTTCAATGACGACATTAGGAGCCC
GCATCTCATTGACGATTGATGCAAGATCTTGTGATGAGGTTGATGACTTC
ACTTCAGTGAGATTCGGTATGGTGAACGAGGTCTTTTGTTCGGATGGCGA
GGGATGCACTTGGCTGATGTTATGGACAGTTGATGTCACTAATGTTGCTG
GATCCCAACCGTTTGGATGAAATGATTGTAATGTAGCTTTAGGTAGTGTG
GAACTGTAAACCATTTGAGGTGCTGGTGGTTGAGTGGACGACAACACTCC
AGAGTTTGACGGTATCGGATAAGTCGGACCGTTTGGGTAAGCATAAGTCT
TGGTTGTGATAGATTGAAGACATTATACCTGTCGTTGGTATGAAGGGCAA
TGGTGAATTATTGCTGGTTTGAGGGCCGGTGGTACTTGGCAGGATCGGAG
GATCATCTTCTTCTGGGATTGGGCTGTCTTGTGGTATTTGATTGCGTACG
TTCTAATGAACGAGAATTGGTTCTGCTTTGGTAGATTTTTGAGAGCTTCG
TCCATACCACCTTGGTCATCAGATTCTAGCCCAGATTCATAGGCTTGGAG
TCGAGCTCGAGACTTTGCGATCTTTGCCTCTCGCTGTAGTTGGTCATATT
CAAGTTTCTTCTTGTCAAGATTTTGTTGATATTCATTGTCGACCGTGAGT
GCTGCTAACCTGGCGA Coding sequence (CDS) from alignment at scaffold_340:174667..175582 >TCONS_00060351 ID=TCONS_00060351|Name=TCONS_00060351|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_340:174667..175582 (Clytia hemisphaerica)
TCTGTATTCAGCATTGACAATGTAGGGATTACCATATCTTTCAGTCAGTA
AGTCCTTAGCACGTGATGGGAGGTATATGCAGGATTCGACAAGCTCCTTG
GCGGCTCCATTAACATGACTCATCAAGTGTTGTAGTCTGGTCTTCCCATC
AGGAACTTTCTTTTCGACAGCCTCCTCAAATGATGtgatgaaaaatggaa
aatccgTGGCGTTTTCACTGAATATTTCAATGACGACATTAGGAGCCCGC
ATCTCATTGACGATTGATGCAAGATCTTGTGATGAGGTTGATGACTTCAC
TTCAGTGAGATTCGGTATGGTGAACGAGGTCTTTTGTTCGGATGGCGAGG
GATGCACTTGGCTGATGTTATGGACAGTTGATGTCACTAATGTTGCTGGA
TCCCAACCGTTTGGATGAAATGATTGTAATGTAGCTTTAGGTAGTGTGGA
ACTGTAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060351-exon-scaffold_340-1491911889:174667..175582 | TCONS_00060351-exon-scaffold_340-1491911889:174667..175582 | Clytia hemisphaerica | exon |
| TCONS_00060351-exon-scaffold_340-1510915933:174667..175582 | TCONS_00060351-exon-scaffold_340-1510915933:174667..175582 | Clytia hemisphaerica | exon |
| TCONS_00060351-exon-scaffold_340-1575043694:174667..175582 | TCONS_00060351-exon-scaffold_340-1575043694:174667..175582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:174667..175582 . |
Blast
The following BLAST results are available for this feature:
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