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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060373 ID=TCONS_00060373|Name=TCONS_00060373|organism=Clytia hemisphaerica|type=transcript|length=2426bpRun BLAST on NCBI transcript from alignment at scaffold_341:247040..267512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060373 ID=TCONS_00060373|Name=TCONS_00060373|organism=Clytia hemisphaerica|type=transcript|length=20473bp|location=Sequence derived from alignment at scaffold_341:247040..267512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060373 vs. Swiss-Prot (Human)
Match: ABCA1 (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3) HSP 1 Score: 409.453 bits (1051), Expect = 1.891e-122 Identity = 253/594 (42.59%), Postives = 365/594 (61.45%), Query Frame = 1
Query: 475 ARVWFTRSSWHGMPSALSAGSNIMLKLY----TNDSAYGIQTSNHPL--PKNALEKXXXXXXXGTLNLXXXXXXXXXXXXXXXXXXXVQEKTSKAKHIQFVSGVSSVCYWLATFCWDFINYLVPXXXXXXXXXXXNLDEF--NGELGAIFIVLILFACAMLPFVYMMSFVFTSSXXXXXXXXXXXXXXXXXXXXXXFILDATQEY---DIADALHHVFLLLPSYALPKAVMDIGLNKQRRDSCNIDASAKRECVRF--NLKYRDDTFDMEGPGIGTHCLFMFLECIVYFLIVILIEEGFFLGKCFGGGRSTTFSVNAR------EDMDVQEERKKIHNMAQENIKNSALVVKNLTKVYRSSGMMAVDHLCFEVPKKECFGLLGVNGAGKTTTFGMLTGELGITDGTAFLDGFNIQSHLKDVQQRLGYCPQFDALIEKMTGREMLRMFARLRGCPPHKLENVVDEAIAQLNLGKWADKMCGDYSGGNKRKLSTAIALVGDPPIVFLDEPTSGMDPASRRFLWNTLSGVLNSGRSIVLTSHSMEECEALCTRLVIMVNGQLKCIGSIQHLKSRYGQGYTLMMKIGSSNPQQQQAQN 2199
+VWF WH + S L+ +N +L+ N S YGI NHPL K L + + ++S + ++ + A SF+ ASF+ FL+QE+ SKAKH+QF+SGV V YWL+ F WD NY+VPA ++ I+F F + + L + ++L+L+ ++ P +Y SFVF AY V+ + L I + +A F+L+ + +I D L VFL+ P + L + ++D+ N+ D+ RF N ++D+ +G + M +E +V+FLI +LI+ FF+ VNA+ ED DV+ ER++I + +N L +K LTK+YR AVD +C +P ECFGLLGVNGAGK++TF MLTG+ +T G AFL+ +I S++ +V Q +GYCPQFDA+ E +TGRE + FA LRG P ++ V + AI +L L K+ +K G+YSGGNKRKLSTA+AL+G PP+VFLDEPT+GMDP +RRFLWN V+ GRS+VLTSHSMEECEALCTR+ IMVNG+ +C+GS+QHLK+R+G GYT++++I SNP + Q+
Sbjct: 1590 VKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTDNKLNNINDILKSVFLIFPHFCLGRGLIDMVKNQAMADALE----------RFGENRFVSPLSWDL----VGRNLFAMAVEGVVFFLITVLIQYRFFI---------RPRPVNAKLSPLNDEDEDVRRERQRILDGGGQN---DILEIKELTKIYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQD 2157 HSP 2 Score: 169.088 bits (427), Expect = 7.456e-43 Identity = 92/233 (39.48%), Postives = 140/233 (60.09%), Query Frame = 1
Query: 1468 VKNLTKVYRSSGMMAVDHLCFEVPKKECFGLLGVNGAGKTTTFGMLTGELGITDGTAFLDGFNIQSHLKDVQQRLGYCPQFDALIEKMTGREMLRMFARLRGCPPHKLENVVDEAIAQLNLGKWADKM---CGDYSGGNKRKLSTAIALVGDPPIVFLDEPTSGMDPASRRFLWNTLSGVLNSGRSIVLTSHSMEECEALCTRLVIMVNGQLKCIGSIQHLKSRYGQGYTLMM 2157
++NL KVYR +AVD L + + LG NGAGKTTT +LTG T GTA++ G +I+S + ++Q LG CPQ + L + +T E + +ARL+G ++ +++ L++G + K+ SGG +RKLS A+A VG +V LDEPT+G+DP SRR +W L GR+I+L++H M+E + L R+ I+ +G+L C+GS LK++ G GY L +
Sbjct: 901 IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQ--MALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK-YRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTL 1130 The following BLAST results are available for this feature:
BLAST of TCONS_00060373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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