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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060408 ID=TCONS_00060408|Name=TCONS_00060408|organism=Clytia hemisphaerica|type=transcript|length=3983bp
GTGCAGAAATTGGCATCAAAGCTGTTCATTTAACCAAAGACAGTTTAAAG
GATGTTAAGGATGgcaattttgatttattattttcaagccCTGAGTGCCT
ACTAGAGGAAACATTTCGAGAACTACTTCTCAAACTCTCTCCGAGAGTAA
TTGGTGTTGTCATTGATGAAGTGCATGTTGTTGTTAAATGGGGCCTTCCT
TCTACCCAAAAAACTGCATTTCGTCAAATGTATGCTAAAGTTGGAAACTT
GAGGGCAATGTTCAATAAGCCCTTCTTATGTTTAACTGCTACGGCAAATc
gtaaaacaacaagaaaaattgTTAAGTTGGTTCAGTTGAGAAATTATAAG
ACTGAAAGGTTTTCTCCTGAGAAGCCCAATGTAAAGATTTCagctcaaaa
actgaaaatcacATCCGACTTCAGTGAGGTTCAATCACACATGAAGCCAA
TACTGGATGAGTTTGATTTGAATGGGAAGTGCGAGAAAACAATCATCTAC
TGCCATAACATTGGTCGATGTGGTGAGATATTTAtgctttttccttcaaa
ataccGTGGTAAAACTGTTCGTGTTTTTCATGGAAAGACTCCCTCACATC
GCAGGGCAGAAGTAATGGAAGAGTTCACAAAAGCTGAAGGGGGTGAATGT
TTCATTGTTATTGCAACTTCAGCCCTTGGAATGGGTGTTAACATCAGAAA
TATTAGGCATGTCATTCATGTTGGCCTACCAAAAGATGTGGAGGCATACA
TCCAGGAGATAGGAAGAGCAGGTCGTGATGGCCATTTAAGCACAGCAATG
CTGTTTTATCGACCAGCCTGCGATTTTTCTCACTGCGAAGATGATGATCT
AGTGAGAGTGGTTAAAAATAAAGAGGATTTATGTAGAAGGTTAGCCTTAT
TGAAATGCTTTAATGTTGTCCCAGATAACAAGTTATTGGAACATGATTGT
TGTGATGTGTGTGAAAAATCCTGTATGTGTGATGTTTGTATTGGAGCTGT
GCCAAATGTTCCAGAGCCTCCCGAACCCCTGCAAAAAGTAAGATCTACAG
GTGAGAGGGAGAAACAAGCTGTTTTGGAATGTCTGGAGCAGCTTGCTTTC
AGTGAGGTAGATAAACAATTACTGATTGACAATGTTGATTGCATTGAAAC
AGATGCAGATATCTTGACTCttggttttgatgaacacaAAAGTATGTACA
TCATCAGAATTTTTATGGAAGTTTTTAATTACGGTGCACTTGAATCTTCA
ACCATGACTACCAAATCAGCTGAAAGTGTTTCtgaatcaacaacaacaaa
tcaaaatgaaagCCAAATTGATATGTTATCATTGGACCATCCATACCAAA
CAGAAGATTTGGATTCTGAAGATGAAGTGTTTTGGCAAGAAtttttctct
taatttttttatgattatttATTTTACTATACTGGTTTTATTTATAGAAA
ATGTTTTATGGCATTTATTTGGAGTGACAGTAATAATTTGTTCACCACTA
CACTCCCTTTAATAATAAAAGTAATAGatttaaagggataaccagataaa
aaggtcaaatttagaCCAAAGGTTTCTTCCATTATCTTTAGATCAAGGAT
ATATATTTGTCCTAAACTTCATTCTGAAGCAAAATGGCTAgactcttttt
ataagcatataagtTTTGGCTGAAGCTCAGTATGCCTAAAGCTAAGCATG
ATTTTGAGCACCAAATTATGCTTTGTAAACTTAATGTATCAAGTAAAAAG
ATAATTGAAAGTTTCATGTACTTTCtctttccttgatttggagagagaaa
aaatgaagacattcgattgtttttgcatgtttttgatatgtttttttATC
ATTCAATGTCAGCTTTGAAAAACAGCTTTAACCCATAAAATTTAGAGGCT
TTTCTAAGCATTATGACAATGAAAGTAATCTTCaggctaaattttatttt
ctatctgGTTGTCCTTCTTTAGCTAAAAAACGCATCGCATATAAAAAAAT
CAACTGTCTTCCTCACTATTGAATGTAAAATCTTGATTTTGCCACTTTTT
TGTCAAACGTTTGATCCATTTTAATAACATTACTTTGTTCAATTTACTGA
AAATGTCACtgtcaaaatctttgaaatgatCAAGTCGTCTTCCTTCtgtt
tttcgaaagtttttgcTGATGCAATGGACCTCTTTGAAAAGGGAATGAAA
CAGTTGGTGCTGATGCTTGTTCGAGTGATGCCCAGACCTTTTTGTGACAC
CAGCATCAGCAAGAGAGGACTGGACTAGCTCCTCCATCCCACCAATTGAT
TTTGTAATACTCTCCACACTTTCGTCTGTCAGGTTTTGCATCCCTTGAGA
CTTTATTAATGCTTTTGTTACTTTGTTAATGTGCTCAAGTCTTAAGTCAC
ATGAGATGTTTTGGCCATAACCACCCTGATTATTGACAAACCTGTTCCAT
TTAAGCCGGTGAAAGTCTCTTGGGGATAGCAAAGCAAGCTCCCTTGCTTT
CAGCCTCAGACAAATGTAGGCATATTTATCATTCCCATTCATGCGAAAAA
TAAAAGTGAAGATATTGTAAAATCGGACAAGTCTATCACCATCTCCTTCC
TTGACTGCATCATTAGCATTCAGTAGCAAAAGACCTGTGCAGAGTCTAGT
ACAGCTGTATTTGTACAGATCATCTTTGACTTTGGGTGCTTCTGGTTGTA
CCAGTGTTGCCAGTGGTGGAAGACCATGCTGTATCTCCTCGTGCAAATTC
TTTGCAGGCAGAAAGAAGAAGGTCTAGTAAAAAGAAGAGAACGAATGTGT
TCATAGGCTGTTGATCTCTtctgataaatatttttaatttttttgttggc
ctggaataatttcaaaaaacaagaaaaattgctGTTATTTCTTTTATCTC
TCAGTACTAATTAGAATTTGGGTGGATTTTGTCTTGAAAGAATCTTACTT
TAGTACAGCTTTTGTCACGGCATTTGTGTGTTTGCTGCTCTGGTAACATC
TTTGACAGCGAGTTCAAACAACCCATGACATTGTTTTTGAGGAACAAATG
TATCCTTCCATGAAGCCATCTTCTCCTTGTGTCAGGGTCTTTTGTTACCA
GTTCAGACGGTGGATGATAATTTTCAATCCTCTCTGCACCTGAATTATAA
CAAATAAAGTTAAATTATACAAAACTTGAAGTTTCTAGAATTGTATCCAT
CAATCCATCGTTGTGATAAAAGATGTTTTAATTTTGTATATGGCTCTGGT
CTCCATTGAGCACTGTGCAGCATCAATCACAACCAAATCTTATCATCTTA
GTAATGACCTCAAGCCTTctacttttttgacatttctgaCCATCAATTCT
CTTTACCTTCTTGCTCCAAAAATCCTGACACCAACAGAGCTTTTGTTTCG
ACATCAAAGAACTCCTTGACTTCCTGGAACTTGTTTTCCACTTTTCTCAA
GGCATTTTTGTTGCCTGATTTTATGGCGTTTGGAAGATACGTCCCACTGT
CACCAGTAGCTTGTGTATTTCTGAAGATTTTGAGAGCAGACTAAAATGGA
AGAAATAGGAAAATATTGTGGGGTTAATACTAAGTCCTGTATTGCCTGAA
GAATGCACCAGCCAACAAAACACTGCATATAGGTCTTTACTTATGATAAA
CATATAATATcaaattattttgttgttttgtattGACTTTTAATACAATC
AGTGATAAACATGATGTATTATATTCATCTCTTAGCAGGCAAATCAAGTT
CATTTAAATAAATATATTTACATCGTATGCTGTCCTTATGGCATGCCAAT
CTTCAAATTTTGGTGTAATGCCTTGCAAACGTTCTTCCACTGTCTTTCCA
TCTGCGCGAGCATTTTGCACTGTTCTTGCCCTTTCTTCTGTTAGTTGATC
ACCACCAAAGAAGGTTGTATTTTTGCCTGATTCATCTTTTACCACATACC
TGAAAATCATTAttgaagtttttttagtttttg Run BLAST on NCBI transcript from alignment at scaffold_341:510385..515468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060408 ID=TCONS_00060408|Name=TCONS_00060408|organism=Clytia hemisphaerica|type=transcript|length=5084bp|location=Sequence derived from alignment at scaffold_341:510385..515468+ (Clytia hemisphaerica)
GTGCAGAAATTGGCATCAAAGCTGTTCATTTAACCAAAGACAGTTTAAAG
GATGTTAAGGATGgcaattttgatttattattttcaagccCTGAGTGCCT
ACTAGAGGAAACATTTCGAGAACTACTTCTCAAACTCTCTCCGAGAGTAA
TTGGTGTTGTCATTGATGAAGTGCATGTTGTTGTTAAATGGTGAGGAAAT
AATGGAACTTaattaaaaatacaataaagtGTAATAAAGTTCTTTTATTA
TGACACAATGTCATGTTGAAGGGTCCAGCTTCCAAAAAATAACTAGTAAA
CAAGTACTAAATACTAAACATTTTCATCTCATTGTTTGATGGTCAAGTGG
TCTTAGAaatattcaacatgacatcgtGTCCTACAAACATAATCAGGAGA
AATCTAAATTTGCAAAAAGTGAATAAAGAAAGGAACGTACTTATTTTGTA
AGGATGTACTTAACAATATTTCTAGCTAAAAAGATAacaaaaactttaaa
taaatatcaaatttcaaaagatctttttaaataatatatataCTTACAGT
ATCTAACAAGCTAAGTTTGATGGTATTACATGACTACATGCATTACTAGA
AATACCAAACAACATCAAAAAGCATGATAAAATttcacaagaaaaaaaac
aaaaaaacaatttgtttATAAATGTATAATTACATAGAGTTTGAAGAAAA
CAGAATGAATGCAttttaaatatatatataacCGTTAGATCATCATACAG
gtacttgcatcagtggaggctaacatgcattgCCATCAAATGAATAGCCT
GGCtgttcattaaaatacaaagttaaatcaaaacaaaactggaagagtag
agctgcgagcggagctgcgtagttgatttattttgaaattttgctgcttt
gattggtcagtcatttgatggctgtgcaagttaccctccactgatgcaag
ttacccaacttcacggtatTACAGTAGTAAAATATTCATAATTTCTAATA
AACATACAATATATACACAATACacacattttaaaaacaaaagtatatat
aaatataaataataaaaatatcttttttcagaATAAGATTAATCAAAAAC
AATAATTATTTCATAATATCATGTAATCTTAGCCTTGTTAGATTCACAAC
TAGCCTAGTATGAAcaagaaaacctttaaagcaTCTACATTATATAAAGT
TTGATTTCAATATAAAAGCTTTAAACAGACCtttgaatttaaatttgatg
cattgacttaaaattatttttgtccatttcgtCATTTTCAGGGGCCTTCC
TTCTACCCAAAAAACTGCATTTCGTCAAATGTATGCTAAAGTTGGAAACT
TGAGGGCAATGTTCAATAAGCCCTTCTTATGTTTAACTGCTACGGCAAAT
cgtaaaacaacaagaaaaattgTTAAGTTGGTTCAGTTGAGAAATTATAA
GACTGAAAGGTTTTCTCCTGAGAAGCCCAATGTAAAGATTTCagctcaaa
aactgaaaatcacATCCGACTTCAGTGAGGTTCAATCACACATGAAGCCA
ATACTGGATGAGTTTGATTTGAATGGGAAGTGCGAGAAAACAATCATCTA
CTGCCATAACATTGGTCGATGTGGTGAGATATTTAtgctttttccttcaa
aataccGTGGTAAAACTGTTCGTGTTTTTCATGGAAAGACTCCCTCACAT
CGCAGGGCAGAAGTAATGGAAGAGTTCACAAAAGCTGAAGGGGGTGAATG
TTTCATTGTTATTGCAACTTCAGCCCTTGGAATGGGTGTTAACATCAGAA
ATATTAGGCATGTCATTCATGTTGGCCTACCAAAAGATGTGGAGGCATAC
ATCCAGGAGATAGGAAGAGCAGGTCGTGATGGCCATTTAAGCACAGCAAT
GCTGTTTTATCGACCAGCCTGCGATTTTTCTCACTGCGAAGATGATGATC
TAGTGAGAGTGGTTAAAAATAAAGAGGATTTATGTAGAAGGTTAGCCTTA
TTGAAATGCTTTAATGTTGTCCCAGATAACAAGTTATTGGAACATGATTG
TTGTGATGTGTGTGAAAAATCCTGTATGTGTGATGTTTGTATTGGAGCTG
TGCCAAATGTTCCAGAGCCTCCCGAACCCCTGCAAAAAGTAAGATCTACA
GGTGAGAGGGAGAAACAAGCTGTTTTGGAATGTCTGGAGCAGCTTGCTTT
CAGTGAGGTAGATAAACAATTACTGATTGACAATGTTGATTGCATTGAAA
CAGATGCAGATATCTTGACTCttggttttgatgaacacaAAAGTATGTAC
ATCATCAGAATTTTTATGGAAGTTTTTAATTACGGTGCACTTGAATCTTC
AACCATGACTACCAAATCAGCTGAAAGTGTTTCtgaatcaacaacaacaa
atcaaaatgaaagCCAAATTGATATGTTATCATTGGACCATCCATACCAA
ACAGAAGATTTGGATTCTGAAGATGAAGTGTTTTGGCAAGAAtttttctc
ttaatttttttatgattatttATTTTACTATACTGGTTTTATTTATAGAA
AATGTTTTATGGCATTTATTTGGAGTGACAGTAATAATTTGTTCACCACT
ACACTCCCTTTAATAATAAAAGTAATAGatttaaagggataaccagataa
aaaggtcaaatttagaCCAAAGGTTTCTTCCATTATCTTTAGATCAAGGA
TATATATTTGTCCTAAACTTCATTCTGAAGCAAAATGGCTAgactctttt
tataagcatataagtTTTGGCTGAAGCTCAGTATGCCTAAAGCTAAGCAT
GATTTTGAGCACCAAATTATGCTTTGTAAACTTAATGTATCAAGTAAAAA
GATAATTGAAAGTTTCATGTACTTTCtctttccttgatttggagagagaa
aaaatgaagacattcgattgtttttgcatgtttttgatatgtttttttAT
CATTCAATGTCAGCTTTGAAAAACAGCTTTAACCCATAAAATTTAGAGGC
TTTTCTAAGCATTATGACAATGAAAGTAATCTTCaggctaaattttattt
tctatctgGTTGTCCTTCTTTAGCTAAAAAACGCATCGCATATAAAAAAA
TCAACTGTCTTCCTCACTATTGAATGTAAAATCTTGATTTTGCCACTTTT
TTGTCAAACGTTTGATCCATTTTAATAACATTACTTTGTTCAATTTACTG
AAAATGTCACtgtcaaaatctttgaaatgatCAAGTCGTCTTCCTTCtgt
ttttcgaaagtttttgcTGATGCAATGGACCTCTTTGAAAAGGGAATGAA
ACAGTTGGTGCTGATGCTTGTTCGAGTGATGCCCAGACCTTTTTGTGACA
CCAGCATCAGCAAGAGAGGACTGGACTAGCTCCTCCATCCCACCAATTGA
TTTTGTAATACTCTCCACACTTTCGTCTGTCAGGTTTTGCATCCCTTGAG
ACTTTATTAATGCTTTTGTTACTTTGTTAATGTGCTCAAGTCTTAAGTCA
CATGAGATGTTTTGGCCATAACCACCCTGATTATTGACAAACCTGTTCCA
TTTAAGCCGGTGAAAGTCTCTTGGGGATAGCAAAGCAAGCTCCCTTGCTT
TCAGCCTCAGACAAATGTAGGCATATTTATCATTCCCATTCATGCGAAAA
ATAAAAGTGAAGATATTGTAAAATCGGACAAGTCTATCACCATCTCCTTC
CTTGACTGCATCATTAGCATTCAGTAGCAAAAGACCTGTGCAGAGTCTAG
TACAGCTGTATTTGTACAGATCATCTTTGACTTTGGGTGCTTCTGGTTGT
ACCAGTGTTGCCAGTGGTGGAAGACCATGCTGTATCTCCTCGTGCAAATT
CTTTGCAGGCAGAAAGAAGAAGGTCTAGTAAAAAGAAGAGAACGAATGTG
TTCATAGGCTGTTGATCTCTtctgataaatatttttaatttttttgttgg
cctggaataatttcaaaaaacaagaaaaattgctGTTATTTCTTTTATCT
CTCAGTACTAATTAGAATTTGGGTGGATTTTGTCTTGAAAGAATCTTACT
TTAGTACAGCTTTTGTCACGGCATTTGTGTGTTTGCTGCTCTGGTAACAT
CTTTGACAGCGAGTTCAAACAACCCATGACATTGTTTTTGAGGAACAAAT
GTATCCTTCCATGAAGCCATCTTCTCCTTGTGTCAGGGTCTTTTGTTACC
AGTTCAGACGGTGGATGATAATTTTCAATCCTCTCTGCACCTGAATTATA
ACAAATAAAGTTAAATTATACAAAACTTGAAGTTTCTAGAATTGTATCCA
TCAATCCATCGTTGTGATAAAAGATGTTTTAATTTTGTATATGGCTCTGG
TCTCCATTGAGCACTGTGCAGCATCAATCACAACCAAATCTTATCATCTT
AGTAATGACCTCAAGCCTTctacttttttgacatttctgaCCATCAATTC
TCTTTACCTTCTTGCTCCAAAAATCCTGACACCAACAGAGCTTTTGTTTC
GACATCAAAGAACTCCTTGACTTCCTGGAACTTGTTTTCCACTTTTCTCA
AGGCATTTTTGTTGCCTGATTTTATGGCGTTTGGAAGATACGTCCCACTG
TCACCAGTAGCTTGTGTATTTCTGAAGATTTTGAGAGCAGACTAAAATGG
AAGAAATAGGAAAATATTGTGGGGTTAATACTAAGTCCTGTATTGCCTGA
AGAATGCACCAGCCAACAAAACACTGCATATAGGTCTTTACTTATGATAA
ACATATAATATcaaattattttgttgttttgtattGACTTTTAATACAAT
CAGTGATAAACATGATGTATTATATTCATCTCTTAGCAGGCAAATCAAGT
TCATTTAAATAAATATATTTACATCGTATGCTGTCCTTATGGCATGCCAA
TCTTCAAATTTTGGTGTAATGCCTTGCAAACGTTCTTCCACTGTCTTTCC
ATCTGCGCGAGCATTTTGCACTGTTCTTGCCCTTTCTTCTGTTAGTTGAT
CACCACCAAAGAAGGTTGTATTTTTGCCTGATTCATCTTTTACCACATAC
CTGAAAATCATTAttgaagtttttttagtttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060408-exon-scaffold_341-1491911889:510385..510574 | TCONS_00060408-exon-scaffold_341-1491911889:510385..510574 | Clytia hemisphaerica | exon |
| TCONS_00060408-exon-scaffold_341-1510915933:510385..510574 | TCONS_00060408-exon-scaffold_341-1510915933:510385..510574 | Clytia hemisphaerica | exon |
| TCONS_00060408-exon-scaffold_341-1575043694:510385..510574 | TCONS_00060408-exon-scaffold_341-1575043694:510385..510574 | Clytia hemisphaerica | exon |
| TCONS_00060408-exon-scaffold_341-1491911889:511676..515468 | TCONS_00060408-exon-scaffold_341-1491911889:511676..515468 | Clytia hemisphaerica | exon |
| TCONS_00060408-exon-scaffold_341-1510915933:511676..515468 | TCONS_00060408-exon-scaffold_341-1510915933:511676..515468 | Clytia hemisphaerica | exon |
| TCONS_00060408-exon-scaffold_341-1575043694:511676..515468 | TCONS_00060408-exon-scaffold_341-1575043694:511676..515468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:510385..515468 + |
Blast
BLAST of TCONS_00060408 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 1.643e-20 Identity = 82/273 (30.04%), Postives = 137/273 (50.18%), Query Frame = 3
Query: 33 TKDSLKDVKDGNFDLLFSSPE------CLLEETFRELLLKLSPRXXXXXXXXXXXXXKWGLPSTQKTAFRQMYAKVGNLR-AMFNKPFLCLTATANRKTTRKIVKLVQLRNYKTERFSPEKPNVKISAQKLKITSDFSEVQSHMKPILDEFDLNGKCEKTIIYCHNIGRC----GEIFMLFPSKYRGKTVRVFHGKTPSHRRAEVMEEFTKAEGGECFIVIATSALGMGVNIRNIRHVIHVGLPKDVEAYIQEIGRAGRDGHLSTAMLFYRPA 818
+++ L D+K G + +++ +PE LL++ ++ + L + +DE H + +WG FR + K+G+L+ A+ P + LTATA+ IV+ + LRN + ++PN+ + ++ K + ++Q + ++ G TIIYC + GE+ L + +H R ++ F + E +C VIAT A GMG+N +IR VIH G PKD+E+Y QEIGRAGRDG S+ + + PA
Sbjct: 624 SENVLTDIKLGKYRIVYVTPEYCSGNMGLLQQLEADIGITL------IAVDEAHCISEWG------HDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEGP---TIIYCPSRKMTQQVTGELRKL------NLSCGTYHAGMSFSTRKDIHHRFVRDEI-QC--VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPA 871
The following BLAST results are available for this feature:
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