TCONS_00060419 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060419
Unique Name	TCONS_00060419
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1212

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_341:248184..254369-
coding sequence from alignment at scaffold_341:248184..254369-

transcript sequence

>TCONS_00060419 ID=TCONS_00060419|Name=TCONS_00060419|organism=Clytia hemisphaerica|type=transcript|length=1212bp
TATAACCTTTCAGGTCTTGCAAAATATTTATCGGTTCAGACCGGCTAGAG
TGTTTTTTAAGTATGTCTTGAGTGGTTCCCACGACATCCATCAgcactaa
aaatcaaaacaaaagagaaaTTCCAAGAATTTATTGAGTACTTAGTGACA
GTATTTTAACATTCAGTTCTTATGCAGATCTTCAAAACACTTTTATCGCA
TATAAATAGACCTCGTCTAGGTCATATCAAGTAAAAGGTTACTCCGGCAG
GGCAAAGATGAAAGGTCTTATCATCTTGTTATCAGTAATATCACCAGGTT
TTATGCAGATAGCCAACGACATCAGTCGATTGAAGGCAGAGGTGAAAGTG
TTATCATCCAAACTCTCAGACACTGACCACAACTTATCAATTACTGACCA
AAAACTTTCTCAGCAAATCACACAACTTAGTCAACAGCTCTCACAAAAGA
ACCAACAATTGAACCAAGCAACCCTGAAGATTCATCAGTTGGAATTTCTT
AagacaaaaattttaattcaagATGGATATTGTCGGATCAAGACAGCATC
ATGTGGCAATTGTTTCTGTCAGGAAGATTACAATCTAGCCGAGAAGTTCT
ACTGCGATTGCCGAAACAAACCAAAACGACGGGATTGCAAAGAGCATTAT
GCAAATGGCGAAAGAATAAATGGCGTTTATCTCATCAGCAACAATGTTCA
AGGAGCGTCGACTCAAGTGTTTTGTGACCACACAACTGGTTCCGGCGGCT
GGACAGTCATTCAACGCCGCGTTGACGGAAGCACCAACTTTCAACGTGAT
TGGAAATCATACAAAAATGGATTTGGTCATCTACAGAGGGAGTTCTGGCT
aggaaatgaaaatatttatcttTTAACTAGACAAGCTTTACTCACAGGAT
CAACTGTACGCTTTGAGTTGATCAGGAGAAGCAGTGGAAGAAAGCTTTGG
GCTGAATATTCAACTTTCGAACTAGGTAACGAAGGAACAAAATACCAACT
AAAGCTTCGTGGTTATAGAGGTAATGTGCGTGATTTGANcgcgaaagttt
atgctcgcgaaatatatttttccgttaaattcgcgaaagtaaatgtcgtg
aatttcgcgatttttcgtccacgcgaaagtttctgctcgcgagagtttgt
acgcctaataaaatcaaatctagaatcattttttataagattcttccctt
tttaaattttat

Run BLAST on NCBI

protein sequence of TCONS_00060419-protein

>TCONS_00060419-protein ID=TCONS_00060419-protein|Name=TCONS_00060419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MKGLIILLSVISPGFMQIANDISRLKAEVKVLSSKLSDTDHNLSITDQKL
SQQITQLSQQLSQKNQQLNQATLKIHQLEFLKTKILIQDGYCRIKTASCG
NCFCQEDYNLAEKFYCDCRNKPKRRDCKEHYANGERINGVYLISNNVQGA
STQVFCDHTTGSGGWTVIQRRVDGSTNFQRDWKSYKNGFGHLQREFWLGN
ENIYLLTRQALLTGSTVRFELIRRSSGRKLWAEYSTFELGNEGTKYQLKL
RGYRGNVRDLXAKVYAREIYFSVKFAKVNVVNFAIFRPRESFCSREFVRL
IKSNLESFFIRFFPF

Run BLAST on NCBI

transcript from alignment at scaffold_341:248184..254369-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060419 ID=TCONS_00060419|Name=TCONS_00060419|organism=Clytia hemisphaerica|type=transcript|length=6186bp|location=Sequence derived from alignment at scaffold_341:248184..254369- (Clytia hemisphaerica)
TATAACCTTTCAGGTCTTGCAAAATATTTATCGGTTCAGACCGGCTAGAG
TGTTTTTTAAGTATGTCTTGAGTGGTTCCCACGACATCCATCAGCACTAA
AAATCAAAACAAAAGAGAAATTCCAAGAATTTATTGAGTACTTAGTGACA
GTATTTTAACATTCAGTTCTTATGCAGATCTTCAAAACACTTTTATCGCA
TATAAATAGACCTCGTCTAGGTCATATCAAGTAAAAGGTTACTCCGGCAG
GGCAAAGATGAAAGGTCTTATCATCTTGTTATCAGTAATATCACCAGGTT
TTATGCAGATAGCCAACGACATCAGTCGATTGAAGGCAGAGGTGAAAGTG
TTATCATCCAAACTCTCAGACACTGACCACAACTTATCAATTACTGACCA
AAAACTTTCTCAGCAAATCACACAACTTAGTCAACAGCTCTCACAAAAGA
ACCAACAATTGAACCAAGCAACCCTGAAGATTCATCAGTTGGAATTTCTT
AAGACAAAAATTTTAATTCAAGATGGATATTGTCGGATCAAGACAGCATC
ATGTGGCAATTGTTTCTGTCAGGAAGATTACAATCTAGCCGAGAAGTTCT
ACTGCGATTGCCGAAACAAACCAAAACGACGGGATTGCAAAGAGCATTAT
GCAAATGGCGAAAGAATAAATGGCGTTTATCTCATCAGCAACAATGTTCA
AGGTACAGTGGGACCTCTAATTAGCGGACACCATCGGGGAAAGGGGTTAG
TGTCCGCTAATTAGAAGTGTCCGCTTTTTAGAAACTTTTGATCTCGGAGC
TCCAATTTTGAAATTAGGCTATCCCAGGGTATCGAAAATACAAAATTGGG
GTCTAAAGTACTTATCTGCAGACACTAGGCCATAGAAGAACAGCTCGAGT
GACTGGCAAGAGGTTAAATCGAGGTGGTGGGTACGGACTTGAAGTACCAT
TGATTTATGATTTCTTTGGCCCACCTAAATTCGTTGAATGGATCAAGGAA
AAACTGGAAATTTTTAGAAATAATTTGAATAATAAGACTAATAAGTGTTT
GAAATAAAAATATCTGAAACAATTTTTTTCGATTTTGGACGTTTGTGACC
CGTTTGATGTTCAATGTCCGCTAATTGGAGAGCTAAAATAGGGGTTTTGG
CCATTTCGTGCGAAAAAATTTGTCCGCTGATCAGAGGGTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNTCAAGTGTTTTGTGACCACACAACTGGTTCCGG
CGGCTGGACAGTCATTCAACGCCGCGTTGACGGAAGCACCAACTTTCAAC
GTGATTGGAAATCATACAAAAATGGATTTGGTTATCTACAGAGGGAGTTC
TGGCTAGGAAATGAAAATATTTATCTTTTAACTAGACAAGCTTTACTCAC
AGGATCAACTGTACGCTTTGAGTTGATCAGAAGAAGCAGTGGAAGAAAGC
TTTGGGCTGAATATTCAACTTTCGAACTAGGTAACGAAGGAACAAAATAC
CAACTAAGGCTTCGTGGTTATAGAGGTAATGTGCGTGATTTGATGACATA
TCACAATGGGGAACGATTTTCGACATTCGACCAAGACAACGACTCAGATG
GCAATCGGCATTGCGCTCAACTATTTAAAGGAGCCTGGTGGTTTCACAAC
TGTCAACATGTCAGTCTTAATGGAGCCTTTGATGCGTTGATGAACGAGAG
AGCGTTTGATTGTATTTGGTGGGGAGATTATGACGACGATGGACGGATGA
TGTTCTCAGAAATAAAGGTTCGCCGGAACTGACCACAACATTAAATATGA
AGTCATAGGACAATTATTTTATGGAGTTTTCTGCTAGCCGAAAAACACCA
CTAGGAAAGCAATGAGGGAAAGGTGGAAAATCAAACGTACATGATCTGTG
TGGCGGAATGACAATACTTAAGGCGTACAAACTTTTGCGAACAGAAACTT
TCGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAATTTCTTTAA
AAATTCTAGGAAGGGTCATTCGCGAAAGTTTATGCTCGCGAAAAATTCTT
GACAAAATAGAAAATCTGTAAAACTTCAAACTTTGATTAAAATGTAACTT
TGATGGCACTTTTTAGCCTGCTAAAAGACTAATAAGTCAAAGAGCAAGAG
TTTCAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCANACTAGGAAAC
GGCCGGGGAAAATGAAATTGTCCGCTAATCAGAGGTGTCCGCCTTTTAGA
GTGTCCGTTAATTAGAGGTTTTACTGTATACCATACCCCAAAGACAAATT
TCATTTTCATCAACATTTTTCAACATATGATTATTATTTTTCAGTTTAGA
TTTCATATCTATGAGCATAAAAAAGACAATTTTTATTTTGCAATCAAAAC
GTAATTTTCAAAATTATTCTCTTTAGGAGCGTCGACTCAAGTGTTTTGTG
ACCACACAACTGGTTCCGGCGGCTGGACAGTCATTCAACGCCGCGTTGAC
GGAAGCACCAACTTTCAACGTGATTGGAAATCATACAAAAATGGATTTGG
TCATCTACAGAGGGAGTTCTGGCTAGGAAATGAAAATATTTATCTTTTAA
CTAGACAAGCTTTACTCACAGGATCAACTGTACGCTTTGAGTTGATCAGG
AGAAGCAGTGGAAGAAAGCTTTGGGCTGAATATTCAACTTTCGAACTAGG
TAACGAAGGAACAAAATACCAACTAAAGCTTCGTGGTTATAGAGGTAATG
TGCGTGATTTGANCGCGAAAGTTTATGCTCGCGAAATATATTTTTCCGTT
AAATTCGCGAAAGTAAATGTCGTGAATTTCGCGATTTTTCGTCCACGCGA
AAGTTTCTGCTCGCGAGAGTTTGTACGCCTAATAAAATCAAATCTAGAAT
CATTTTTTATAAGATTCTTCCCTTTTTAAATTTTAT

Coding sequence (CDS) from alignment at scaffold_341:248184..254369-

>TCONS_00060419 ID=TCONS_00060419|Name=TCONS_00060419|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_341:248184..254369- (Clytia hemisphaerica)
GAGCGTCGACTCAAGTGTTTTGTGACCACACAACTGGTTCCGGCGGCTGG
ACAGTCATTCAACGCCGCGTTGACGGAAGCACCAACTTTCAACGTGATTG
GAAATCATACAAAAATGGATTTGGTCATCTACAGAGGGAGTTCTGGCTAG
GAAATGAAAATATTTATCTTTTAACTAGACAAGCTTTACTCACAGGATCA
ACTGTACGCTTTGAGTTGATCAGGAGAAGCAGTGGAAGAAAGCTTTGGGC
TGAATATTCAACTTTCGAACTAGGTAACGAAGGAACAAAATACCAACTAA
AGCTTCGTGGTTATAGAGGTAATGTGCGTGATTTGANCGCGAAAGTTTAT
GCTCGCGAAATATATTTTTCCGTTAAATTCGCGAAAGTAAATGTCGTGAA
TTTCGCGATTTTTCGTCCACGCGAAAGTTTCTGCTCGCGAGAGTTTGTAC
GCCTAATAAAATCAAATCTAGAATCATTTTTTATAAGATTCTTCCCTTTT
TAAATGAAAGGTCTTATCATCTTGTTATCAGTAATATCACCAGGTTTTAT
GCAGATAGCCAACGACATCAGTCGATTGAAGGCAGAGGTGAAAGTGTTAT
CATCCAAACTCTCAGACACTGACCACAACTTATCAATTACTGACCAAAAA
CTTTCTCAGCAAATCACACAACTTAGTCAACAGCTCTCACAAAAGAACCA
ACAATTGAACCAAGCAACCCTGAAGATTCATCAGTTGGAATTTCTTAAGA
CAAAAATTTTAATTCAAGATGGATATTGTCGGATCAAGACAGCATCATGT
GGCAATTGTTTCTGTCAGGAAGATTACAATCTAGCCGAGAAGTTCTACTG
CGATTGCCGAAACAAACCAAAACGACGGGATTGCAAAGAGCATTATGCAA
ATGGCGAAAGAATAAATGGCGTTTATCTCATCAGCAACAATGTTCAAGGA
GCGTCGACTCAAGTGTTTTGTGACCACACAACTGGTTCCGGCGGCTGGAC
AGTCATTCAACGCCGCGTTGACGGAAGCACCAACTTTCAACGTGATTGGA
AATCATACAAAAATGGATTTGGTCATCTACAGAGGGAGTTCTGGCTAGGA
AATGAAAATATTTATCTTTTAACTAGACAAGCTTTACTCACAGGATCAAC
TGTACGCTTTGAGTTGATCAGGAGAAGCAGTGGAAGAAAGCTTTGGGCTG
AATATTCAACTTTCGAACTAGGTAACGAAGGAACAAAATACCAACTAAAG
CTTCGTGGTTATAGAGGTAATGTGCGTGATTTGANCGCGAAAGTTTATGC
TCGCGAAATATATTTTTCCGTTAAATTCGCGAAAGTAAATGTCGTGAATT
TCGCGATTTTTCGTCCACGCGAAAGTTTCTGCTCGCGAGAGTTTGTACGC
CTAATAAAATCAAATCTAGAATCATTTTTTATAAGATTCTTCCCTTTTTA
AATGAAAGGTCTTATCATCTTGTTATCAGTAATATCACCAGGTTTTATGC
AGATAGCCAACGACATCAGTCGATTGAAGGCAGAGGTGAAAGTGTTATCA
TCCAAACTCTCAGACACTGACCACAACTTATCAATTACTGACCAAAAACT
TTCTCAGCAAATCACACAACTTAGTCAACAGCTCTCACAAAAGAACCAAC
AATTGAACCAAGCAACCCTGAAGATTCATCAGTTGGAATTTCTTAAGACA
AAAATTTTAATTCAAGATGGATATTGTCGGATCAAGACAGCATCATGTGG
CAATTGTTTCTGTCAGGAAGATTACAATCTAGCCGAGAAGTTCTACTGCG
ATTGCCGAAACAAACCAAAACGACGGGATTGCAAAGAGCATTATGCAAAT
GGCGAAAGAATAAATGGCGTTTATCTCATCAGCAACAATGTTCAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037998	XLOC_037998	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060419-protein	TCONS_00060419-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060419-exon-scaffold_341-1575043694:253668..254369	TCONS_00060419-exon-scaffold_341-1575043694:253668..254369	Clytia hemisphaerica	exon
TCONS_00060419-exon-scaffold_341-1575043694:248184..248693	TCONS_00060419-exon-scaffold_341-1575043694:248184..248693	Clytia hemisphaerica	exon
TCONS_00060419-exon-scaffold_341-1510915933:253668..254369	TCONS_00060419-exon-scaffold_341-1510915933:253668..254369	Clytia hemisphaerica	exon
TCONS_00060419-exon-scaffold_341-1510915933:248184..248693	TCONS_00060419-exon-scaffold_341-1510915933:248184..248693	Clytia hemisphaerica	exon
TCONS_00060419-exon-scaffold_341-1491911889:253668..254369	TCONS_00060419-exon-scaffold_341-1491911889:253668..254369	Clytia hemisphaerica	exon
TCONS_00060419-exon-scaffold_341-1491911889:248184..248693	TCONS_00060419-exon-scaffold_341-1491911889:248184..248693	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_341	supercontig	scaffold_341:248184..254369 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141624	0.187036	0.716468	0.916008	0	0	0	0	0.0596707	0	0.0358362	0.0236482	0.259069	0.317596	7.26109	10.4262	2.62468	4.93507	0	0.196733	0.207408	0.354972	1.05577	0.762103	0.0759539	0.0678148	0.147001	0.365	0.0786068	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002181	Fibrinogen_a/b/g_C_dom
IPR014716	Fibrinogen_a/b/g_C_1

Blast

[Close]

BLAST of TCONS_00060419 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.307e-29
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 3

Query:  630 RDCKEHYANGERINGVYLISNNVQGASTQVFCDHTTGSGGWTVIQRRVDGSTNFQRDWKSYKNGFGHLQREFWLGNENIYLLTRQALLTGSTVRFELIRRSSGRKLWAEYSTFELGNEGTKYQLKLRGYRGNVRD 1034
            +DC ++YA G+R +  Y ++ + + +S +V+CD  T  GGWTV+Q R+DGSTNF R W+ YK GFG+L+REFWLGN+ I+LLT+   +    +R +L    +G +L+A Y  F + NE  KY+L +  Y G   D
Sbjct:  211 KDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEM---ILRIDL-EDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGD 341

The following BLAST results are available for this feature:

BLAST of TCONS_00060419 vs. Swiss-Prot (Human)

BLAST of TCONS_00060419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FGL2	1.307e-29	43.70	Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1	[more]

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TCONS_00060419 (transcript) - C. hemisphaerica