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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060433 ID=TCONS_00060433|Name=TCONS_00060433|organism=Clytia hemisphaerica|type=transcript|length=1465bp
TGCATCTCGCCATAAAGACGATAACAGTGTAGCATGCATCATTGATCGAT
GTTATGTCATCACTCTGCCCCAATATAATAGATACAAAGCACACAAGCAA
CGATGGGAAGAGAAAAGAAACCGGAAATTGGTCGTAGTTCCGGAAGTAAA
AAATCACCGGTCACGCCTTTTGCCAAGCCCGGACTTTGATCCTTCCTTAG
TTTATTTTTGTCGTTTTGGTTACGATTATCGGTCTGGAAAATTGATCAAA
AGTACGTATTATTGAAACTTCTTTGAGgtattaaaaatttaaattttagt
tagttttttaaattttaaagtaTAAACGGATCATTTTaagcagatgagat
ggagtttttataagatactttaataattggttatttgaattgataaaaat
gacgcgttctttagaaaaagtagcaAAATGGTTTTATTattggttaacga
ccaaccaaatcaaataagagcttgtaaaaactcgtCCCGTTTTAAGAAAG
TCTTACCTCCATTTCTTTGGATCCACTgtcaaaacttgaaattctttaac
aCGTGCACTGTCAAACCCTTttcagaaatcgaaaaattgtggccctaatt
ttttcttcaaataccTCCAAGTTGTGCACCAATCGACACATTTTCTGTTT
GTGAATTTTGCACATTTTAATAACCAATTGACCCCCCCCTACAAAGAGCG
TAGTCGTAGTCGGCAGCAAATATATTAATATGTTTGGGAAAAAGAAAGCT
AATTCTTTAGGAAGAATATAATTTTGCATACAGATTTTACTTTAGATCTT
AAGAAAAGCCGtcagttttttgaaattccctcgTCCTGACATAGAGGGCT
GCTCATTCNAccaattcccccccccccccctacaaagAACGTATTCGTAG
TCGGCAGCAAATATATTATTATGTTTGGGAAAAAGAAAGCTAATTCTTTA
GGAAGAATATAATTTTGCATACATATTTTACTTTAGATCTTAAGAAAAGC
CGtcagttttttgaaattccctcgTCCTGACATAGAGGGCTGCTCATTAA
TTCATTAACTCTTTCTATATCGTAAAAATTGATGAAATCGatgttttttt
cagtttttagaaGTGCAAACTTCAAATCGAATTGTCTCGGCTCTGACAAA
AGTAAAAATGGTCAAGTTTGAGATCATTGGACAGCTCCTTCAACATCTGT
TTATTTCCCAAATGAAAGCTAAAGCAGCCAAAAGAAAAGTCATGAAATTT
GCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTCTTCGTTCgtcttt
ttaaaactttgggGGAAATTTCCGATTCCAGGTCTTGATCATAAAAATGT
TGCaatattgtcacttttttgaTGAATGTCTTCTTTTTGTCAACGNAAAT
TTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTCTTCGTTCgtct
ttttaaaactttggg Run BLAST on NCBI transcript from alignment at scaffold_341:461698..463419- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060433 ID=TCONS_00060433|Name=TCONS_00060433|organism=Clytia hemisphaerica|type=transcript|length=1722bp|location=Sequence derived from alignment at scaffold_341:461698..463419- (Clytia hemisphaerica)
TGCATCTCGCCATAAAGACGATAACAGTGTAGCATGCATCATTGATCGAT
GTTATGTCATCACTCTGCCCCAATATAATAGGTAATGTTCGTTTCTTTCA
TATCAAAAGATTTGGTAGGTAACGCTCTACACTGATCTACATTTTCAATT
GTTACAAACAGTTATAATGTTTGACTCTATAAAGTTTCGAGCCCTCGCAT
TTTTTTTTATTCTGTAACCCGCATCTCGTAACTCTCATAAATTTTCGCTT
ACTTTTAAATCATCCACCTACCAATCAAAATTAGAATACAAACTCCGCAA
TTCAAAATTTCAAACAGTTTTTTTTTGTCTCTTTCAAGATACAAAGCACA
CAAGCAACGATGGGAAGAGAAAAGAAACCGGAAATTGGTCGTAGTTCCGG
AAGTAAAAAATCACCGGTCACGCCTTTTGCCAAGCCCGGACTTTGATCCT
TCCTTAGTTTATTTTTGTCGTTTTGGTTACGATTATCGGTCTGGAAAATT
GATCAAAAGTACGTATTATTGAAACTTCTTTGAGGTATTAAAAATTTAAA
TTTTAGTTAGTTTTTTAAATTTTAAAGTATAAACGGATCATTTTAAGCAG
ATGAGATGGAGTTTTTATAAGATACTTTAATAATTGGTTATTTGAATTGA
TAAAAATGACGCGTTCTTTAGAAAAAGTAGCAAAATGGTTTTATTATTGG
TTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCGTCCCGTTTT
AAGAAAGTCTTACCTCCATTTCTTTGGATCCACTGTCAAAACTTGAAATT
CTTTAACACGTGCACTGTCAAACCCTTTTCAGAAATCGAAAAATTGTGGC
CCTAATTTTTTCTTCAAATACCTCCAAGTTGTGCACCAATCGACACATTT
TCTGTTTGTGAATTTTGCACATTTTAATAACCAATTGACCCCCCCCTACA
AAGAGCGTAGTCGTAGTCGGCAGCAAATATATTAATATGTTTGGGAAAAA
GAAAGCTAATTCTTTAGGAAGAATATAATTTTGCATACAGATTTTACTTT
AGATCTTAAGAAAAGCCGTCAGTTTTTTGAAATTCCCTCGTCCTGACATA
GAGGGCTGCTCATTCNACCAATTCCCCCCCCCCCCCCTACAAAGAACGTA
TTCGTAGTCGGCAGCAAATATATTATTATGTTTGGGAAAAAGAAAGCTAA
TTCTTTAGGAAGAATATAATTTTGCATACATATTTTACTTTAGATCTTAA
GAAAAGCCGTCAGTTTTTTGAAATTCCCTCGTCCTGACATAGAGGGCTGC
TCATTAATTCATTAACTCTTTCTATATCGTAAAAATTGATGAAATCGATG
TTTTTTTCAGTTTTTAGAAGTGCAAACTTCAAATCGAATTGTCTCGGCTC
TGACAAAAGTAAAAATGGTCAAGTTTGAGATCATTGGACAGCTCCTTCAA
CATCTGTTTATTTCCCAAATGAAAGCTAAAGCAGCCAAAAGAAAAGTCAT
GAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTCTTCGTT
CGTCTTTTTAAAACTTTGGGGGAAATTTCCGATTCCAGGTCTTGATCATA
AAAATGTTGCAATATTGTCACTTTTTTGATGAATGTCTTCTTTTTGTCAA
CGNAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTCTTCG
TTCGTCTTTTTAAAACTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060433-exon-scaffold_341-1575043694:463339..463419 | TCONS_00060433-exon-scaffold_341-1575043694:463339..463419 | Clytia hemisphaerica | exon |
| TCONS_00060433-exon-scaffold_341-1575043694:461698..463081 | TCONS_00060433-exon-scaffold_341-1575043694:461698..463081 | Clytia hemisphaerica | exon |
| TCONS_00060433-exon-scaffold_341-1510915933:463339..463419 | TCONS_00060433-exon-scaffold_341-1510915933:463339..463419 | Clytia hemisphaerica | exon |
| TCONS_00060433-exon-scaffold_341-1510915933:461698..463081 | TCONS_00060433-exon-scaffold_341-1510915933:461698..463081 | Clytia hemisphaerica | exon |
| TCONS_00060433-exon-scaffold_341-1491911889:463339..463419 | TCONS_00060433-exon-scaffold_341-1491911889:463339..463419 | Clytia hemisphaerica | exon |
| TCONS_00060433-exon-scaffold_341-1491911889:461698..463081 | TCONS_00060433-exon-scaffold_341-1491911889:461698..463081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:461698..463419 - |
Blast
The following BLAST results are available for this feature:
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