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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060440 ID=TCONS_00060440|Name=TCONS_00060440|organism=Clytia hemisphaerica|type=transcript|length=1460bp
tttcatccgacacgctaaagctctgaaggtcgggaaaattttcaacatct
ggaaggtttacattacggaatgtTGCGAGACCGCGTCAGAAAGTTTTTTC
GAAGGTACTGGGCCCGATATTGTTTTGAACTTTCTCCGTAAAAAACCTTT
CTCTAAAGTAATATatataaatgaaattttctaagGAATTTTCGTACCTG
CGAATGTAAACAAAGTTGCTGTGATTTCACCATACAACCTGATACAGATT
TTGGAGAGTGAGGACTGTTGgcattttcagaagaaaaaaggaaGACCTAA
ATATTGTTTTCTATTATTTTGAAATGAGAAGTTTTCATGGCTTCCAAGGT
ATTATAGGATTATAGTTATCCAAGATGACTAAATTTAACATTAACCGTCA
GCTTATTTAGAAGGCAAGAGTCAAGGAAACTGTGTCAAGCCACTCAAGGT
ATGGGTTTTGATTTAAACTTTTACTAAGATCTTTCCCCACTGCTGGTCCA
TATTTTATTACCCTTCTTCAATGTCAACTCCACAACTGGTCttctttttg
atatttctttaaATTACCATGTGGTTGGTGTCATTtgtaaaatagatttt
aaaaatttttctaaatatggTTGTATCATGTCGACAAAAAGTTTCAAGTT
CACTCATCCTGGGATTGACACTcccaagaaaatttttaaaaaagacgCTT
ACAGAAATTGCATCATTTGTGGAAGTGACATTGTTTTGAAGAGCCTTCGC
TTTACTACATTGAAGAAAACATCCCTTAAAGAAACTTTGAGTGAGGTTGT
AGACTTGAGCAAGTTTGATAATGAATCAAGGGCATGTAAGTCATGCACAA
CATCAGTAGAAAATCTTCCAAAACTTATCAACAGATATAGAGAGGGAAAG
AAAAAGATTATTGAGAAATTCAATGAGACTTGTGATAAATATCCACCAGG
TCAAGTTTCAGTTAAACGTTTAGCCAAATCTCAATCACCTGGAAGAAGTC
CATCATCAAAATCTTCCATATGTTCCAGTAGGAAACGACTTTGCTTAGTT
CAGGGAAATGCAATTGGAACATTGAAGAGCCGCAGAAAGTTGCCATTACC
AGAGAAGAGAACATCagaatctgaaaaagaaaacattgtttTTGCTATTA
ATACAATCAcgGGAAACCCAATAGTAGAATCAATAACGTCAACCAAAAAT
GAACACTTGGTTGGTAGTAAACGCTCAAAGGTATGTTAAACTTGAAAAGA
GTCTCTATTACAAGGCATcatactaaaatctcagacatcatgtTGTCTAG
TGATGTGATGGTATAtatcaaaaaaaacttaaaaatactTTTAGTACCAC
AAGGTACTAAAATACTAGAAAAATATGTaagttttatcaattttctaatt
tttagaatttttcgtcaatttttcaaaaactaatttaaaatttcccatgt
tcaataatat Run BLAST on NCBI protein sequence of TCONS_00060440-protein >TCONS_00060440-protein ID=TCONS_00060440-protein|Name=TCONS_00060440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSTKSFKFTHPGIDTPKKIFKKDAYRNCIICGSDIVLKSLRFTTLKKTSL
KETLSEVVDLSKFDNESRACKSCTTSVENLPKLINRYREGKKKIIEKFNE
TCDKYPPGQVSVKRLAKSQSPGRSPSSKSSICSSRKRLCLVQGNAIGTLK
SRRKLPLPEKRTSESEKENIVFAINTITGNPIVESITSTKNEHLVGSKRS
KVC Run BLAST on NCBI transcript from alignment at scaffold_341:524825..526661- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060440 ID=TCONS_00060440|Name=TCONS_00060440|organism=Clytia hemisphaerica|type=transcript|length=1837bp|location=Sequence derived from alignment at scaffold_341:524825..526661- (Clytia hemisphaerica)
TTTCATCCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTTCAACATCT
GGAAGGTTTACATTACGGAATGTTGCGAGACCGCGTCAGAAAGTTTTTTC
GAAGGTACTGGGCCCGATATTGTTTTGAACTTTCTCCGTAAAAAACCTTT
CTCTAAAGTAATATATATAAATGAAATTTTCTAAGGAATTTTCGTACCTG
CGAATGTAAACAAAGTTGCTGTGATTTCACCATACAACCTGATACAGATT
TTGGAGAGTGAGGACTGTTGGCATTTTCAGAAGAAAAAAGGAAGACCTAA
ATATTGTTTTCTATTATTTTGAAATGAGAAGTTTTCATGGCTTCCAAGGT
ATTATAGGATTATAGTTATCCAAGATGACTAAATTTAACATTAACCGTCA
GCTTATTTAGAAGGCAAGAGTCAAGGAAACTGTGTCAAGCCACTCAAGGT
ATGGGTTTTGATTTAAACTTTTACTAAGATCTTTCCCCACTGCTGGTCCA
TATTTTATTACCCTTCTTCAATGTCAACTCCACAACTGGTCTTCTTTTTG
ATATTTCTTTAAATTACCATGTGGTTGGTGTCATTTGTAAAATAGATTTT
AAAAATTTTTCTAAATATGGTTGTATCATGTCGACAAAAAGTTTCAAGTT
CACTCATCCTGGGATTGACACTCCCAAGAAAATTTTTAAAAAAGACGCTT
ACAGAAATTGCATCATTTGTGGAAGTGACATTGTTTTGAAGAGCCTTCGC
TTTACTACATTGAAGAAAACATCCCTTAAAGAAACTTTGAGTGAGGTTGT
AGACTTGAGCAAGTTTGATAATGAATCAAGGGCATGTAAGTCATGCACAA
CATCAGTAGAAAATCTTCCAAAACTTATCAACAGATATAGAGAGGGAAAG
AAAAAGATTATTGAGAAATTCAATGAGACTTGTGATAAATATCCACCAGG
TCAAGTTTCAGTTAAACGTTTAGCCAAATCTCAATCACCTGGAAGAAGTC
CATCATCAAAATCTTCCATATGTTCCAGTAGGAAACGACTTTGCTTAGTT
CAGGGAAATGCAATTGGAACATTGAAGAGCCGCAGAAAGTTGCCATTACC
AGAGAAGAGAACATCAGAATCTGAAAAAGAAAACATTGTTTTTGCTATTA
ATACAATCACGGTAAAATTTTAAAACATGATTTTTTATTTTTTTTCTTGG
AAAATTTACGGTGAAGTAATTTTCATCACTAGTGGAAATAAAACTTGCAT
TACCCACCCATTACCCACCAGTTAACTCTATGTAAAAGTTGGTCATTAAA
ATAATGAGAGGTAGATTTTTTTATATTGTTTATAATCTGAATTTTGTCCT
TGCTGATATAAGTACAATATAGTTAAAAAAGTTTAAAATGGGAAATTATA
ATTTTTCAGAGTTCTTTTGTATTTTTTTTAACTTCTTTAATCTGCTATGA
CCTGTATGAAATAATATTTATAATACCTTTTCATCTTTTGTCATGTGTGC
AAAGTTATTCTATATAACAATATTCATTTAATTTGTAGGGAAACCCAATA
GTAGAATCAATAACGTCAACCAAAAATGAACACTTGGTTGGTAGTAAACG
CTCAAAGGTATGTTAAACTTGAAAAGAGTCTCTATTACAAGGCATCATAC
TAAAATCTCAGACATCATGTTGTCTAGTGATGTGATGGTATATATCAAAA
AAAACTTAAAAATACTTTTAGTACCACAAGGTACTAAAATACTAGAAAAA
TATGTAAGTTTTATCAATTTTCTAATTTTTAGAATTTTTCGTCAATTTTT
CAAAAACTAATTTAAAATTTCCCATGTTCAATAATAT Coding sequence (CDS) from alignment at scaffold_341:524825..526661- >TCONS_00060440 ID=TCONS_00060440|Name=TCONS_00060440|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_341:524825..526661- (Clytia hemisphaerica)
GGAAACCCAATAGTAGAATCAATAACGTCAACCAAAAATGAACACTTGGT
TGGTAGTAAACGCTCAAAGGTATGTTAAATGTCGACAAAAAGTTTCAAGT
TCACTCATCCTGGGATTGACACTCCCAAGAAAATTTTTAAAAAAGACGCT
TACAGAAATTGCATCATTTGTGGAAGTGACATTGTTTTGAAGAGCCTTCG
CTTTACTACATTGAAGAAAACATCCCTTAAAGAAACTTTGAGTGAGGTTG
TAGACTTGAGCAAGTTTGATAATGAATCAAGGGCATGTAAGTCATGCACA
ACATCAGTAGAAAATCTTCCAAAACTTATCAACAGATATAGAGAGGGAAA
GAAAAAGATTATTGAGAAATTCAATGAGACTTGTGATAAATATCCACCAG
GTCAAGTTTCAGTTAAACGTTTAGCCAAATCTCAATCACCTGGAAGAAGT
CCATCATCAAAATCTTCCATATGTTCCAGTAGGAAACGACTTTGCTTAGT
TCAGGGAAATGCAATTGGAACATTGAAGAGCCGCAGAAAGTTGCCATTAC
CAGAGAAGAGAACATCAGAATCTGAAAAAGAAAACATTGTTTTTGCTATT
AATACAATCACGGGAAACCCAATAGTAGAATCAATAACGTCAACCAAAAA
TGAACACTTGGTTGGTAGTAAACGCTCAAAGGTATGTTAAATGTCGACAA
AAAGTTTCAAGTTCACTCATCCTGGGATTGACACTCCCAAGAAAATTTTT
AAAAAAGACGCTTACAGAAATTGCATCATTTGTGGAAGTGACATTGTTTT
GAAGAGCCTTCGCTTTACTACATTGAAGAAAACATCCCTTAAAGAAACTT
TGAGTGAGGTTGTAGACTTGAGCAAGTTTGATAATGAATCAAGGGCATGT
AAGTCATGCACAACATCAGTAGAAAATCTTCCAAAACTTATCAACAGATA
TAGAGAGGGAAAGAAAAAGATTATTGAGAAATTCAATGAGACTTGTGATA
AATATCCACCAGGTCAAGTTTCAGTTAAACGTTTAGCCAAATCTCAATCA
CCTGGAAGAAGTCCATCATCAAAATCTTCCATATGTTCCAGTAGGAAACG
ACTTTGCTTAGTTCAGGGAAATGCAATTGGAACATTGAAGAGCCGCAGAA
AGTTGCCATTACCAGAGAAGAGAACATCAGAATCTGAAAAAGAAAACATT
GTTTTTGCTATTAATACAATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060440-exon-scaffold_341-1575043694:525501..526661 | TCONS_00060440-exon-scaffold_341-1575043694:525501..526661 | Clytia hemisphaerica | exon |
| TCONS_00060440-exon-scaffold_341-1575043694:524825..525123 | TCONS_00060440-exon-scaffold_341-1575043694:524825..525123 | Clytia hemisphaerica | exon |
| TCONS_00060440-exon-scaffold_341-1510915933:525501..526661 | TCONS_00060440-exon-scaffold_341-1510915933:525501..526661 | Clytia hemisphaerica | exon |
| TCONS_00060440-exon-scaffold_341-1510915933:524825..525123 | TCONS_00060440-exon-scaffold_341-1510915933:524825..525123 | Clytia hemisphaerica | exon |
| TCONS_00060440-exon-scaffold_341-1491911889:525501..526661 | TCONS_00060440-exon-scaffold_341-1491911889:525501..526661 | Clytia hemisphaerica | exon |
| TCONS_00060440-exon-scaffold_341-1491911889:524825..525123 | TCONS_00060440-exon-scaffold_341-1491911889:524825..525123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:524825..526661 - |
Blast
The following BLAST results are available for this feature:
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