TCONS_00060567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060567
Unique NameTCONS_00060567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060567 ID=TCONS_00060567|Name=TCONS_00060567|organism=Clytia hemisphaerica|type=transcript|length=777bp
AAAATATAAAGTGTATTGAATTTCCAGTGGAAGACTCCGAGTACGCTGAC
GACACAGCGGTGCTTTTTGATTCTCGTAATACCTTATCAGAGTTTTCACC
GTTACTTGTGAAATATTTCGGTCTTTTTGGATTGGAAATCCATAAAGGTG
ACTTAGAAAATCCTGATTTACCAACCAAAACAGAAGCTCTCTTTGTCTCT
GCCCCTGAAAAGTCGTACCGAAGTGCCACTACCTTCGACAACATTGATCT
TTCAGAACATCCGTGGAAATCGATTCTTTCCTGTAGTTGAGAAGATTTGC
TACCTTGGCACAATAATCACACACGATTATAAAGATAATGAAGATGAATG
TTGCCGAATTAAAAAAGCTGGGAATGCATTTGGTGTGTTACGCCGTTCTC
TTTTCTCCAATCCATTGATAACGTATGAAGCAAAAGGTGCTACTTATCGT
AGTCTCATTTTGCCAGTTCTTCTATATGGTGCAGAAGTGGTGTCTAACGA
AGAATTTATAAAACCAGTTGTTAAatcacttttattttcattttttacat
cGGAATATGCTTCTTCAGATTCATCTTACAACAAGGTGTGATAATGGGTG
CgaaaaattactgaaaatttggacacgcattaatttaacTGAGCACCTTC
GTGAGCTTAGCTTTTTCTTAAATTTAACCTGTGAATATCAACACAATTTT
CACAAATAATCTTAAAACAACAAACAAGAACTTTGAattcttttttggta
atttaatttcgcgaatcagcaaTTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_344:273906..274682

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060567 ID=TCONS_00060567|Name=TCONS_00060567|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_344:273906..274682 (Clytia hemisphaerica)
CAAAAttgctgattcgcgaaattaaattaccaaaaaagaatTCAAAGTTC
TTGTTTGTTGTTTTAAGATTATTTGTGAAAATTGTGTTGATATTCACAGG
TTAAATTTAAGAAAAAGCTAAGCTCACGAAGGTGCTCAgttaaattaatg
cgtgtccaaattttcagtaatttttcGCACCCATTATCACACCTTGTTGT
AAGATGAATCTGAAGAAGCATATTCCgatgtaaaaaatgaaaataaaagt
gatTTAACAACTGGTTTTATAAATTCTTCGTTAGACACCACTTCTGCACC
ATATAGAAGAACTGGCAAAATGAGACTACGATAAGTAGCACCTTTTGCTT
CATACGTTATCAATGGATTGGAGAAAAGAGAACGGCGTAACACACCAAAT
GCATTCCCAGCTTTTTTAATTCGGCAACATTCATCTTCATTATCTTTATA
ATCGTGTGTGATTATTGTGCCAAGGTAGCAAATCTTCTCAACTACAGGAA
AGAATCGATTTCCACGGATGTTCTGAAAGATCAATGTTGTCGAAGGTAGT
GGCACTTCGGTACGACTTTTCAGGGGCAGAGACAAAGAGAGCTTCTGTTT
TGGTTGGTAAATCAGGATTTTCTAAGTCACCTTTATGGATTTCCAATCCA
AAAAGACCGAAATATTTCACAAGTAACGGTGAAAACTCTGATAAGGTATT
ACGAGAATCAAAAAGCACCGCTGTGTCGTCAGCGTACTCGGAGTCTTCCA
CTGGAAATTCAATACACTTTATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038098XLOC_038098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060567-exon-scaffold_344-1491911889:273906..274682TCONS_00060567-exon-scaffold_344-1491911889:273906..274682Clytia hemisphaericaexon
TCONS_00060567-exon-scaffold_344-1510915933:273906..274682TCONS_00060567-exon-scaffold_344-1510915933:273906..274682Clytia hemisphaericaexon
TCONS_00060567-exon-scaffold_344-1575043694:273906..274682TCONS_00060567-exon-scaffold_344-1575043694:273906..274682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:273906..274682 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.105269	0	0	0	3.24018	2.32958	0.106402	0.0761237	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top