|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060772 ID=TCONS_00060772|Name=TCONS_00060772|organism=Clytia hemisphaerica|type=transcript|length=777bp
CACAGATGGGATTTCTTGTAGGATGTGTCCCATAGGAACATATAAACCAT
TAAATGAGACAGAATGTCGTCAATGCCTCAAGGGTACATACAAACCTTGG
GCAAGTTTAGATTCGTGTATAAGATGTCCAACCGGATCAACCACAGACGG
AAAGTCATGTACGAAATGCCCAAAGGGAACATTCGCTCGGTTCGGCTGGA
AAGAATGTCAAACATGTCGCTTAGGTACTTATTCACCTTTAGGATCCGAT
AAATGTCATTTCTGTAATTCAGGTATTGCCATAAATGGGACATTGTGTCA
ATTGTGTCCTACAGGAACGTTTAAGTATAGCGAAACACAATGTAGAGAAT
GCCCTTCTGGTACATACTCAGATAACCTAAGGTCTACAGAATCTCACTGT
AAAACATGTTCTGGAGCAGTATCAAAAGACAAGACATCATGCAATGCATG
CTCCAAAGGAACATACAGCGTTCATGGGACTAGATGCCAGCAATGTCCAA
AAGGAACTCATTCAAATAAAATAGACTCTGGCTACTGTCCACAATGTCCT
TTAGGGACTAATAAAGGACAAAGAAGGCAGCACCATTTGCAAGAAATGCA
AACAGGACGACTGGCTACCAAACAGAAACAGGACAAAATGCATCGAAAAC
GAGTTTATATACAGATTCAACAACGATACTATTTTTGATTATACTGACGG
CAATTATATCAATACTAttggtgaaaatgaaaaacccCTGCTCGTCAATT
TTTGTTCTCCAACAAATAACCATCGAC Run BLAST on NCBI protein sequence of TCONS_00060772-protein >TCONS_00060772-protein ID=TCONS_00060772-protein|Name=TCONS_00060772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
TDGISCRMCPIGTYKPLNETECRQCLKGTYKPWASLDSCIRCPTGSTTDG
KSCTKCPKGTFARFGWKECQTCRLGTYSPLGSDKCHFCNSGIAINGTLCQ
LCPTGTFKYSETQCRECPSGTYSDNLRSTESHCKTCSGAVSKDKTSCNAC
SKGTYSVHGTRCQQCPKGTHSNKIDSGYCPQCPLGTNKGQRRQHHLQEMQ
TGRLATKQKQDKMHRKRVYIQIQQRYYF Run BLAST on NCBI transcript from alignment at scaffold_349:132844..133673+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060772 ID=TCONS_00060772|Name=TCONS_00060772|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_349:132844..133673+ (Clytia hemisphaerica)
CACAGATGGGATTTCTTGTAGGATGTGTCCCATAGGAACATATAAACCAT
TAAATGAGACAGAATGTCGTCAATGCCCCAAGGGTATNGAACATATAAAC
CATTAAATGAGACAGAATGTCGTCAATGCCTCAAGGGTACATACAAACCT
TGGGCAAGTTTAGATTCGTGTATAAGATGTCCAACCGGATCAACCACAGA
CGGAAAGTCATGTACGAAATGCCCAAAGGGAACATTCGCTCGGTTCGGCT
GGAAAGAATGTCAAACATGTCGCTTAGGTACTTATTCACCTTTAGGATCC
GATAAATGTCATTTCTGTAATTCAGGTATTGCCATAAATGGGACATTGTG
TCAATTGTGTCCTACAGGAACGTTTAAGTATAGCGAAACACAATGTAGAG
AATGCCCTTCTGGTACATACTCAGATAACCTAAGGTCTACAGAATCTCAC
TGTAAAACATGTTCTGGAGCAGTATCAAAAGACAAGACATCATGCAATGC
ATGCTCCAAAGGAACATACAGCGTTCATGGGACTAGATGCCAGCAATGTC
CAAAAGGAACTCATTCAAATAAAATAGACTCTGGCTACTGTCCACAATGT
CCTTTAGGGACTAATAAAGGACAAAGAAGGCAGCACCATTTGCAAGAAAT
GCAAACAGGACGACTGGCTACCAAACAGAAACAGGACAAAATGCATCGAA
AACGAGTTTATATACAGATTCAACAACGATACTATTTTTGATTATACTGA
CGGCAATTATATCAATACTAttggtgaaaatgaaaaacccCTGCTCGTCA
ATTTTTGTTCTCCAACAAATAACCATCGAC Coding sequence (CDS) from alignment at scaffold_349:132844..133673+ >TCONS_00060772 ID=TCONS_00060772|Name=TCONS_00060772|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_349:132844..133673+ (Clytia hemisphaerica)
ACAGATGGGATTTCTTGTAGGATGTGTCCCATAGGAACATATAAACCATT
AAATGAGACAGAATGTCGTCAATGCCTCAAGGGTACATACAAACCTTGGG
CAAGTTTAGATTCGTGTATAAGATGTCCAACCGGATCAACCACAGACGGA
AAGTCATGTACGAAATGCCCAAAGGGAACATTCGCTCGGTTCGGCTGGAA
AGAATGTCAAACATGTCGCTTAGGTACTTATTCACCTTTAGGATCCGATA
AATGTCATTTCTGTAATTCAGGTATTGCCATAAATGGGACATTGTGTCAA
TTGTGTCCTACAGGAACGTTTAAGTATAGCGAAACACAATGTAGAGAATG
CCCTTCTGGTACATACTCAGATAACCTAAGGTCTACAGAATCTCACTGTA
AAACATGTTCTGGAGCAGTATCAAAAGACAAGACATCATGCAATGCATGC
TCCAAAGGAACATACAGCGTTCATGGGACTAGATGCCAGCAATGTCCAAA
AGGAACTCATTCAAATAAAATAGACTCTGGCTACTGTCCACAATGTCCTT
TAGGGACTAATAAAGGACAAAGAAGGCAGCACCATTTGCAAGAAATGCAA
ACAGGACGACTGGCTACCAAACAGAAACAGGACAAAATGCATCGAAAACG
AGTTTATATACAGATTCAACAACGATACTATTTTTGAACAGATGGGATTT
CTTGTAGGATGTGTCCCATAGGAACATATAAACCATTAAATGAGACAGAA
TGTCGTCAATGCCTCAAGGGTACATACAAACCTTGGGCAAGTTTAGATTC
GTGTATAAGATGTCCAACCGGATCAACCACAGACGGAAAGTCATGTACGA
AATGCCCAAAGGGAACATTCGCTCGGTTCGGCTGGAAAGAATGTCAAACA
TGTCGCTTAGGTACTTATTCACCTTTAGGATCCGATAAATGTCATTTCTG
TAATTCAGGTATTGCCATAAATGGGACATTGTGTCAATTGTGTCCTACAG
GAACGTTTAAGTATAGCGAAACACAATGTAGAGAATGCCCTTCTGGTACA
TACTCAGATAACCTAAGGTCTACAGAATCTCACTGTAAAACATGTTCTGG
AGCAGTATCAAAAGACAAGACATCATGCAATGCATGCTCCAAAGGAACAT
ACAGCGTTCATGGGACTAGATGCCAGCAATGTCCAAAAGGAACTCATTCA
AATAAAATAGACTCTGGCTACTGTCCACAATGTCCTTTAGGGACTAATAA
AGGACAAAGAAGGCAGCACCATTTGCAAGAAATGCAAACAGGACGACTGG
CTACCAAACAGAAACAGGACAAAATGCATCGAAAACGAGTTTATATACAG
ATTCAACAACGATACTATTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060772-exon-scaffold_349-1491911889:132844..132882 | TCONS_00060772-exon-scaffold_349-1491911889:132844..132882 | Clytia hemisphaerica | exon |
| TCONS_00060772-exon-scaffold_349-1510915933:132844..132882 | TCONS_00060772-exon-scaffold_349-1510915933:132844..132882 | Clytia hemisphaerica | exon |
| TCONS_00060772-exon-scaffold_349-1575043694:132844..132882 | TCONS_00060772-exon-scaffold_349-1575043694:132844..132882 | Clytia hemisphaerica | exon |
| TCONS_00060772-exon-scaffold_349-1491911889:132936..133673 | TCONS_00060772-exon-scaffold_349-1491911889:132936..133673 | Clytia hemisphaerica | exon |
| TCONS_00060772-exon-scaffold_349-1510915933:132936..133673 | TCONS_00060772-exon-scaffold_349-1510915933:132936..133673 | Clytia hemisphaerica | exon |
| TCONS_00060772-exon-scaffold_349-1575043694:132936..133673 | TCONS_00060772-exon-scaffold_349-1575043694:132936..133673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:132844..133673 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011641 | Tyr-kin_ephrin_A/B_rcpt-like |
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
|
