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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060773 ID=TCONS_00060773|Name=TCONS_00060773|organism=Clytia hemisphaerica|type=transcript|length=968bp
ATTTCGTGTTGTTATATCGTATAACGACTTATCTACTTATTCCTTCAACA
TTGACGACATCGAGACAAACTATAGTGTTCAACATGCTAAAGATGAGGTT
TCAGGTTTcactattttattgaaaaagactCGCTGTACCAATTCAAATGg
aagaaaacttgaaaaaccACAGAAACTTGTGATTAAGATGCACTGcaaca
aaaatcataatgtTGTTAATGACAAAGacgattttattgaaaaagATGAC
GGTTGCGATTTGGAATTGAGGATCAGTCCACGTTTCGCTTGTCCCCAATG
TACATGTCACAATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACAC
GCCAAAGAGGTGTTTGCAATTTNTTCGCTTGTCCCCAATGTACATGTCAC
AATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACACGTCAAAGAGA
TGTTTGCAATTTCCCGATTGATGAGCCAGCAATGCAAGAAAGAGATTGTT
CTGCCAGTAAAGGGTGTTATGAACCGAATATACAGGTGCAATTATTTGCC
TTTATTGGTGTGGTTGTGTTTATGATAGGGGTGTACATTATATGCAgatg
gaaaaaatggaaaatagaCTTTTAGCGATCGAAAGAATACTACCACAAAC
TGAACTTTTAATGTATATTGTATGCGAATGGAAAAATGGGGAAACGACAT
TCAACAGTCGGTAGAACACTACAACCTCTTGCGCTCCTCTGACCAACTTC
AAATTAATATGCTCACCAAACCCTACCTAATTTTAAAACCAAACTCATAT
GGAGTTCTTCCTCGTTTTCAGATTTTAAGAGGGAACTTTCTTTGTTATCA
AGATAAACCAGGACGAAATCCGGCGAGAAATTGGTGGTTTTCAAACGAAA
TTTTGTAATCGATTTTAAATAGTCTAAAAACCCTTAATCTTCAGATATGA
GGCGTCTATTGAAGGGAG Run BLAST on NCBI protein sequence of TCONS_00060773-protein >TCONS_00060773-protein ID=TCONS_00060773-protein|Name=TCONS_00060773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FRVVISYNDLSTYSFNIDDIETNYSVQHAKDEVSGFTILLKKTRCTNSNG
RKLEKPQKLVIKMHCNKNHNVVNDKDDFIEKDDGCDLELRISPRFACPQC
TCHNFWDMMENGKCWTRQRGVCNXFACPQCTCHNFWDMMENGKCWTRQRD
VCNFPIDEPAMQERDCSASKGCYEPNIQVQLFAFIGVVVFMIGVYIICRW
KKWKIDF Run BLAST on NCBI transcript from alignment at scaffold_349:134420..137252+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060773 ID=TCONS_00060773|Name=TCONS_00060773|organism=Clytia hemisphaerica|type=transcript|length=2833bp|location=Sequence derived from alignment at scaffold_349:134420..137252+ (Clytia hemisphaerica)
ATTTCGTGTTGTTATATCGTATAACGACTTATCTACTTATTCCTTCAACA
TTGACGACATCGAGACAAACTATAGTGTTCAACATGCTAAAGATGAGGTT
TCAGGTTTcactattttattgaaaaagactCGCTGTACCAATTCAAATGg
aagaaaacttgaaaaaccACAGAAACTTGTGATTAAGATGCACTGcaaca
aaaatcataatgtTGTTAATGACAAAGacgattttattgaaaaaggtAAG
TGAAATTTGCCTTTGTCATATTATGCCAATCGCTTTCGATTTTAACACCC
CTGCATCACAGATCCGGTGAAAACCCCTTCTCACCTGAAAACTTGgctaa
aatttcgtccccagtgggaaaaGGTATCCTACAATTAAGTAGTTTAGACA
GAAAGATTTgcttaggagagcagatttaaacgacacagtaattatctttt
tataccACGAATAGGTAAGTGCTTTGtcgtaaaaatctgctctcctacgt
AGAACATTCTTCgcccctgtctacgctactgcaaTTTCAGCTCCACTGGA
AGGTTGGctttgattttattcccattcaaaattcaatgtaaaaagaattg
cacttcaaaaccattccCGAATGGATTTTTTGagcttagaacaatagaat
ttctatcccattCGATATTTCgattgaaatttttatccccacttagTAGC
atagccaagaggggcgcaaaatttgtgtaggagagcaggcTTTTATGACA
ATGTAATTAtctattgataccatgaatagaTCATTAcaaagtcataaaaa
tctgcccTCCTACACAAATATTGCgtccctcttggctacgctactgccAC
TGGGGCTGCGAGACAGAGGTGTATTTTACTAGTGTTTGCTAGAacaaatc
aaatcatttttagtACTTTTCGCATGAATGATAAAACAGGCGACCTAATT
GACCTACGGACAAGAGTTTTCCATAGCTTTAATAACTGCTGGCCATTTAC
GAAGTTTACAATATTCTTGAATTTGTAATGACTACcattaaacattttta
aacatcTATTTACAATTTGAATAATTcccccgagggggggggggtactaa
ggTTGGAGggtgaggggtatgtgcggatgggacctccgaaaaccgaccct
taccgtccgtaCATACCAAGCACCCATTTTTACCTAAGTACCCTCCCCCG
GGATAATTCCTCTTTTCGCGGTCCTCTTAATGTTGGAGAGCTATGGTAAC
TGGGCTCAAATTGTGACCAGGATGTGAAAGTAATTCACTAattgaatacc
ttatcggcccttattGGTGTTtattttgggctcgtggcgtaaaagggacc
ggcgtaaaaagggccgataaggtgcCTTAACATTGGAGGGTAGGGGGCTG
GGGTCAGTGATGAAGTTCTTGAGTTCCAATATACTTTCTCTTTGATTGAT
TGTAGATGACGGTTGCGATTTGGAATTGAGGATCAGTCCACGTTTCGCTT
GTCCCCAATGTACATGTCACAATTTCTGGGATATGATGGAGAATGGGAAA
TGTTGGACACGCCAAAGAGGTGTTTGCAATTTNTTCGCTTGTCCCCAATG
TACATGTCACAATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACAC
GTCAAAGAGATGTTTGCAATTTCCCGATTGATGAGCCAGCAATGCAAGAA
AGAGATTGTTCTGCCAGTAAAGGGGTAAATATGTATtactttaggtgtac
aaactttcgcgagaacgaaaaatcacgaaattcacgacatttactttcgc
gaaattaacggaaaaatatttttcgcgagtataaactttcgcgaatcaag
acagaaaattgagaattttcacatgagaAAATGGCTGTTCCTCACAAGTA
CTTCTTGGGTTGGCTTGCAAcgtttgtcctttgacttattagtcttttag
caggctaaaaagtgccataaaagctaCATTTtgttcaaagtttgaagttt
acAAGATTTTCTATtatgtcaagaatttttcgtgagcataaactttcgca
caaagggccaaaattcgcgaaaatcgcgaaagtttgtacgcctaaagtat
tgcTGAAAGTTGTATCGACGAATCaccaatttcatgaaaaaatatagtCG
TTCCAGGCTCTCGAAATCCCAATGAGGATAGAAATCCTAAATTCTTTATT
GGGGCAGGGGGAGACTCCTTTGCGAAAATGACGTGTCTCTTGTAAAACGA
AAGCTCAAAATGAAATataattcatttttctttattattcaGTGTTATGA
ACCGAATATACAGGTGCAATTATTTGCCTTTATTGGTGTGGTTGTGTTTA
TGATAGGGGTGTACATTATATGCAgatggaaaaaatggaaaatagaCTTT
TAGCGATCGAAAGAATACTACCACAAACTGAACTTTTAATGTATATTGTA
TGCGAATGGAAAAATGGGGAAACGACATTCAACAGTCGGTAGAACACTAC
AACCTCTTGCGCTCCTCTGACCAACTTCAAATTAATATGCTCACCAAACC
CTACCTAATTTTAAAACCAAACTCATATGGAGTTCTTCCTCGTTTTCAGA
TTTTAAGAGGGAACTTTCTTTGTTATCAAGATAAACCAGGACGAAATCCG
GCGAGAAATTGGTGGTTTTCAAACGAAATTTTGTAATCGATTTTAAATAG
ATACTCTAAAAACCCTTAATCTTCAGATATGAGGCGTCTTTTGAAGGGAG
AAGTTTATTTATANTGTAATCGATTTTAAATAGATACTCTAAAAACCCTT
AATCTTCAGATATGAGGCGTCTATTGAAGGGAG Coding sequence (CDS) from alignment at scaffold_349:134420..137252+ >TCONS_00060773 ID=TCONS_00060773|Name=TCONS_00060773|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_349:134420..137252+ (Clytia hemisphaerica)
TTTCGTGTTGTTATATCGTATAACGACTTATCTACTTATTCCTTCAACAT
TGACGACATCGAGACAAACTATAGTGTTCAACATGCTAAAGATGAGGTTT
CAGGTTTcactattttattgaaaaagactCGCTGTACCAATTCAAATGga
agaaaacttgaaaaaccACAGAAACTTGTGATTAAGATGCACTGcaacaa
aaatcataatgtTGTTAATGACAAAGacgattttattgaaaaagATGACG
GTTGCGATTTGGAATTGAGGATCAGTCCACGTTTCGCTTGTCCCCAATGT
ACATGTCACAATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACACG
CCAAAGAGGTGTTTGCAATTTNTTCGCTTGTCCCCAATGTACATGTCACA
ATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACACGTCAAAGAGAT
GTTTGCAATTTCCCGATTGATGAGCCAGCAATGCAAGAAAGAGATTGTTC
TGCCAGTAAAGGGTGTTATGAACCGAATATACAGGTGCAATTATTTGCCT
TTATTGGTGTGGTTGTGTTTATGATAGGGGTGTACATTATATGCAgatgg
aaaaaatggaaaatagaCTTTTAGTTTCGTGTTGTTATATCGTATAACGA
CTTATCTACTTATTCCTTCAACATTGACGACATCGAGACAAACTATAGTG
TTCAACATGCTAAAGATGAGGTTTCAGGTTTcactattttattgaaaaag
actCGCTGTACCAATTCAAATGgaagaaaacttgaaaaaccACAGAAACT
TGTGATTAAGATGCACTGcaacaaaaatcataatgtTGTTAATGACAAAG
acgattttattgaaaaagATGACGGTTGCGATTTGGAATTGAGGATCAGT
CCACGTTTCGCTTGTCCCCAATGTACATGTCACAATTTCTGGGATATGAT
GGAGAATGGGAAATGTTGGACACGCCAAAGAGGTGTTTGCAATTTNTTCG
CTTGTCCCCAATGTACATGTCACAATTTCTGGGATATGATGGAGAATGGG
AAATGTTGGACACGTCAAAGAGATGTTTGCAATTTCCCGATTGATGAGCC
AGCAATGCAAGAAAGAGATTGTTCTGCCAGTAAAGGGTGTTATGAACCGA
ATATACAGGTGCAATTATTTGCCTTTATTGGTGTGGTTGTGTTTATGATA
GGGGTGTACATTATATGCAgatggaaaaaatggaaaatagaCTTTTAGTT
TCGTGTTGTTATATCGTATAACGACTTATCTACTTATTCCTTCAACATTG
ACGACATCGAGACAAACTATAGTGTTCAACATGCTAAAGATGAGGTTTCA
GGTTTcactattttattgaaaaagactCGCTGTACCAATTCAAATGgaag
aaaacttgaaaaaccACAGAAACTTGTGATTAAGATGCACTGcaacaaaa
atcataatgtTGTTAATGACAAAGacgattttattgaaaaagATGACGGT
TGCGATTTGGAATTGAGGATCAGTCCACGTTTCGCTTGTCCCCAATGTAC
ATGTCACAATTTCTGGGATATGATGGAGAATGGGAAATGTTGGACACGCC
AAAGAGGTGTTTGCAATTTNTTCGCTTGTCCCCAATGTACATGTCACAAT
TTCTGGGATATGATGGAGAATGGGAAATGTTGGACACGTCAAAGAGATGT
TTGCAATTTCCCGATTGATGAGCCAGCAATGCAAGAAAGAGATTGTTCTG
CCAGTAAAGGGTGTTATGAACCGAATATACAGGTGCAATTATTTGCCTTT
ATTGGTGTGGTTGTGTTTATGATAGGGGTGTACATTATATGCAgatggaa
aaaatggaaaatagaCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060773-exon-scaffold_349-1491911889:134420..134664 | TCONS_00060773-exon-scaffold_349-1491911889:134420..134664 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1510915933:134420..134664 | TCONS_00060773-exon-scaffold_349-1510915933:134420..134664 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1575043694:134420..134664 | TCONS_00060773-exon-scaffold_349-1575043694:134420..134664 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1491911889:135875..136143 | TCONS_00060773-exon-scaffold_349-1491911889:135875..136143 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1510915933:135875..136143 | TCONS_00060773-exon-scaffold_349-1510915933:135875..136143 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1575043694:135875..136143 | TCONS_00060773-exon-scaffold_349-1575043694:135875..136143 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1491911889:136712..137119 | TCONS_00060773-exon-scaffold_349-1491911889:136712..137119 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1510915933:136712..137119 | TCONS_00060773-exon-scaffold_349-1510915933:136712..137119 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1575043694:136712..137119 | TCONS_00060773-exon-scaffold_349-1575043694:136712..137119 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1491911889:137207..137252 | TCONS_00060773-exon-scaffold_349-1491911889:137207..137252 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1510915933:137207..137252 | TCONS_00060773-exon-scaffold_349-1510915933:137207..137252 | Clytia hemisphaerica | exon |
| TCONS_00060773-exon-scaffold_349-1575043694:137207..137252 | TCONS_00060773-exon-scaffold_349-1575043694:137207..137252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:134420..137252 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009011 | Man6P_isomerase_rcpt-bd_dom |
Blast
The following BLAST results are available for this feature:
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