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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060796 ID=TCONS_00060796|Name=TCONS_00060796|organism=Clytia hemisphaerica|type=transcript|length=879bp
TTTCTATGTTTACAGCCTTTAAATAGAATTCAGTATGATTTCACGTGGAG
AACTTGTGAGAATATGTCGTAAAATTGTTTGTGTTGGGCGCAATTACCAA
GAACATTGTGCAGAACTCAATAATGCAGTCCCTACGAAACCgttattatt
tttaaaaccACCTGTTAGTATTATTACTGAAGGCTCACCAGTAATTGTAC
CTGAGGGAAGTACAAATATTCACCATGAAGTAGAATTAGGTATTGTTATC
GGGAAAAAAGGATCAAGAATCCCTGAAGAAAAAGCTATGGACCATGTTGA
TTGTTATTTACTTGCGCTAGACATGACTGAGCGGGATTTACAAGATGTTG
CTAAAAAGAACAGCCATCCTTGGTTATTAGCAAAATGTTGGGACACATTT
TGTCCGATTAGTGATGTTATTCCAAAATCTGCTATTGAGGATGTTAACAA
CATTGATATTAATTTAGCAGTGAATGGTGTTACACGACAAAGTGGGAATA
CTCGGGATATGATTTTCTCACTACCATTTTTGATCAGTCATATTAGTAAA
ATAATGAAGTTAGAGTATGGTGATATTATTTTAACGGGTACCCCAAGTGG
TGTGGGTCCTGTCAAAGGAGGTGACACTATCCAATGTGCTTTAGAAGGAA
TTACCAAAATGCAGTTTGATGTCAAGAATCAATCTGATATGTGATTGCAA
ACAAACTGTCAAATatgatttttaaatgaaatttcgaaattttacagTTG
TATTATAGCTTATCTGCAATTGATAACCAAAATCATATACTGGGACATag
atattatattatatatttttacactcttttgtaaattttcataaaattat
aATTATAGACTTCACGCATACAATCAAAA Run BLAST on NCBI protein sequence of TCONS_00060796-protein >TCONS_00060796-protein ID=TCONS_00060796-protein|Name=TCONS_00060796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MISRGELVRICRKIVCVGRNYQEHCAELNNAVPTKPLLFLKPPVSIITEG
SPVIVPEGSTNIHHEVELGIVIGKKGSRIPEEKAMDHVDCYLLALDMTER
DLQDVAKKNSHPWLLAKCWDTFCPISDVIPKSAIEDVNNIDINLAVNGVT
RQSGNTRDMIFSLPFLISHISKIMKLEYGDIILTGTPSGVGPVKGGDTIQ
CALEGITKMQFDVKNQSDM Run BLAST on NCBI transcript from alignment at scaffold_349:778184..779115+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060796 ID=TCONS_00060796|Name=TCONS_00060796|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_349:778184..779115+ (Clytia hemisphaerica)
TTTCTATGTTTACAGCCTTTAAATAGAATTCAGTATGATTTCACGTGGAG
AACTTGTGAGAATATGTCGTAAAATTGTTTGTGTTGGGCGCAATTACCAA
GAACATTGCGCGGAACTCAATAATGCTGTTCCTACGAAACCATNAATTAC
CAAGAACATTGTGCAGAACTCAATAATGCAGTCCCTACGAAACCgttatt
atttttaaaaccACCTGTTAGTATTATTACTGAAGGCTCACCAGTAATTG
TACCTGAGGGAAGTACAAATATTCACCATGAAGTAGAATTAGGTATTGTT
ATCGGGAAAAAAGGATCAAGAATCCCTGAAGAAAAAGCTATGGACCATGT
TGATTGTTATTTACTTGCGCTAGACATGACTGAGCGGGATTTACAAGATG
TTGCTAAAAAGAACAGCCATCCTTGGTTATTAGCAAAATGTTGGGACACA
TTTTGTCCGATTAGTGATGTTATTCCAAAATCTGCTATTGAGGATGTTAA
CAACATTGATATTAATTTAGCAGTGAATGGTGTTACACGACAAAGTGGGA
ATACTCGGGATATGATTTTCTCACTACCATTTTTGATCAGTCATATTAGT
AAAATAATGAAGTTAGAGTATGGTGATATTATTTTAACGGGTACCCCAAG
TGGTGTGGGTCCTGTCAAAGGAGGTGACACTATCCAATGTGCTTTAGAAG
GAATTACCAAAATGCAGTTTGATGTCAAGAATCAATCTGATATGTGATTG
CAAACAAACTGTCAAATatgatttttaaatgaaatttcgaaattttacag
TTGTATTATAGCTTATCTGCAATTGATAACCAAAATCATATACTGGGACA
Tagatattatattatatatttttacactcttttgtaaattttcataaaat
tataATTATAGACTTCACGCATACAATCAAAA Coding sequence (CDS) from alignment at scaffold_349:778184..779115+ >TCONS_00060796 ID=TCONS_00060796|Name=TCONS_00060796|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_349:778184..779115+ (Clytia hemisphaerica)
ATGATTTCACGTGGAGAACTTGTGAGAATATGTCGTAAAATTGTTTGTGT
TGGGCGCAATTACCAAGAACATTGTGCAGAACTCAATAATGCAGTCCCTA
CGAAACCgttattatttttaaaaccACCTGTTAGTATTATTACTGAAGGC
TCACCAGTAATTGTACCTGAGGGAAGTACAAATATTCACCATGAAGTAGA
ATTAGGTATTGTTATCGGGAAAAAAGGATCAAGAATCCCTGAAGAAAAAG
CTATGGACCATGTTGATTGTTATTTACTTGCGCTAGACATGACTGAGCGG
GATTTACAAGATGTTGCTAAAAAGAACAGCCATCCTTGGTTATTAGCAAA
ATGTTGGGACACATTTTGTCCGATTAGTGATGTTATTCCAAAATCTGCTA
TTGAGGATGTTAACAACATTGATATTAATTTAGCAGTGAATGGTGTTACA
CGACAAAGTGGGAATACTCGGGATATGATTTTCTCACTACCATTTTTGAT
CAGTCATATTAGTAAAATAATGAAGTTAGAGTATGGTGATATTATTTTAA
CGGGTACCCCAAGTGGTGTGGGTCCTGTCAAAGGAGGTGACACTATCCAA
TGTGCTTTAGAAGGAATTACCAAAATGCAGTTTGATGTCAAGAATCAATC
TGATATGTGAATGATTTCACGTGGAGAACTTGTGAGAATATGTCGTAAAA
TTGTTTGTGTTGGGCGCAATTACCAAGAACATTGTGCAGAACTCAATAAT
GCAGTCCCTACGAAACCgttattatttttaaaaccACCTGTTAGTATTAT
TACTGAAGGCTCACCAGTAATTGTACCTGAGGGAAGTACAAATATTCACC
ATGAAGTAGAATTAGGTATTGTTATCGGGAAAAAAGGATCAAGAATCCCT
GAAGAAAAAGCTATGGACCATGTTGATTGTTATTTACTTGCGCTAGACAT
GACTGAGCGGGATTTACAAGATGTTGCTAAAAAGAACAGCCATCCTTGGT
TATTAGCAAAATGTTGGGACACATTTTGTCCGATTAGTGATGTTATTCCA
AAATCTGCTATTGAGGATGTTAACAACATTGATATTAATTTAGCAGTGAA
TGGTGTTACACGACAAAGTGGGAATACTCGGGATATGATTTTCTCACTAC
CATTTTTGATCAGTCATATTAGTAAAATAATGAAGTTAGAGTATGGTGAT
ATTATTTTAACGGGTACCCCAAGTGGTGTGGGTCCTGTCAAAGGAGGTGA
CACTATCCAATGTGCTTTAGAAGGAATTACCAAAATGCAGTTTGATGTCA
AGAATCAATCTGATATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060796-exon-scaffold_349-1491911889:778184..778287 | TCONS_00060796-exon-scaffold_349-1491911889:778184..778287 | Clytia hemisphaerica | exon |
| TCONS_00060796-exon-scaffold_349-1510915933:778184..778287 | TCONS_00060796-exon-scaffold_349-1510915933:778184..778287 | Clytia hemisphaerica | exon |
| TCONS_00060796-exon-scaffold_349-1575043694:778184..778287 | TCONS_00060796-exon-scaffold_349-1575043694:778184..778287 | Clytia hemisphaerica | exon |
| TCONS_00060796-exon-scaffold_349-1491911889:778341..779115 | TCONS_00060796-exon-scaffold_349-1491911889:778341..779115 | Clytia hemisphaerica | exon |
| TCONS_00060796-exon-scaffold_349-1510915933:778341..779115 | TCONS_00060796-exon-scaffold_349-1510915933:778341..779115 | Clytia hemisphaerica | exon |
| TCONS_00060796-exon-scaffold_349-1575043694:778341..779115 | TCONS_00060796-exon-scaffold_349-1575043694:778341..779115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:778184..779115 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011234 | Fumarylacetoacetase_C-rel |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00060796 vs. Swiss-Prot (Human)
Match: FAHD1 (Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 1.554e-71 Identity = 104/204 (50.98%), Postives = 140/204 (68.63%), Query Frame = 2
Query: 68 RKIVCVGRNYQEHCAELNNAVPTKPLLFLKPPVSIITEGSPVIVPEGSTNIHHEVELGIVIGKKGSRIPEEKAMDHVDCYLLALDMTERDLQDVAKKNSHPWLLAKCWDTFCPISDVIPKSAIEDVNNIDINLAVNGVTRQSGNTRDMIFSLPFLISHISKIMKLEYGDIILTGTPSGVGPVKGGDTIQCALEGITKMQFDVKN 679
+ IVCVGRNY +H E+ +AV ++P+LFLKP + EGSP+++P + N+HHE+ELG+V+GK+ +PE AMD+V Y L LDMT RD+QD KK PW LAK + CP+S +PK I D + + + L VNG RQ G T MIFS+P++IS++SKI+ LE GDIILTGTP GVGPVK D I+ + G+ M F V+
Sbjct: 18 KNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 221
The following BLAST results are available for this feature:
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