TCONS_00062026 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062026
Unique Name	TCONS_00062026
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4372

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_361:898544..911985-

transcript sequence

>TCONS_00062026 ID=TCONS_00062026|Name=TCONS_00062026|organism=Clytia hemisphaerica|type=transcript|length=4372bp
aacaatttcaaaatgtttttggtgAAGATATACAATTCATTTATTCCAAA
TGGCATTTCCACAAATTGGTTTTCTCCAAACTTTTCACTGAGTGTCCTGA
GGAGGAGGAACTTCGACATCAAATTTACTTTACTCTTGTGGCACTGATCG
AACAAAGAGACCCTGAAAACTTCAAAGACATTGCTTCAGATTTCTTCCAT
TCATACAAGGTCAAATGTCTCAGTATTGTAACCTTCATGGCTGACCTTTA
CCTTACTGAACCAGAGAAGTGGGCACTATGTTACCGCAAACCAGAATTTC
ATCACTGTGATATCTTCATGCACATCAATACAACTATTCAATCATTACGA
TTGTCGCTTGGTTCTTTGAGAGAACAAGTCTCCATTGGTACTTTACTCAA
TACCTTACTCAATAACGACCATTCAGTGTATTTGAAACAAAGATGCCAAC
AACAGCTTGCTGAGATAGAGCCTTCATCTCATGTCACATCTCTCGGCATC
TCCGATGAAGACATGAACAAAGTCTCTGATACACAATGGTTTGTTACTCA
CGATGAATCAGTTTATGAAGTCAATTGGAACTCTGATGGCTGTTTGGAAG
AATTTTGTCCAATCAGATGTTTGGAGCTGCTTTGTTTTGGCTTGTGTGAA
CACATGTATACATGTAATTGTCAAACTGATGTTAACGATATTTGCGCCCA
CATTCACAAAGTTCACTCCTTTGAAATGGGTGTGTCACACTGCCAACAGA
CCCCTGGTGCTGAATCTGAACTTCCAGAGGGGAGtaagaagaaattcaaa
ttgTATGCTCGAACAagcaaaaataaacaagaatCAAGGCATTCAATCAA
TAAGAATCTTGAATTTCTACGACAATTCGTCACTGAGGATCCTTCTCAAG
AATTATTGGATGAAATCAAGCAAACACTTGACCATTTGAAATCCATCTGT
CAAAAGTCCAAGCGGAAAAAGCTATAGCTTATTCCACCTCAACATTTTGA
GTTGCCAGATGGTAGGAGGGCTGAAATACGATTCTTGAATGCAGATATTG
GGCATCCAATGGTAGATGAAAAAGATGTGACTTCCAAAACGACCAGGATA
TATCCTGCTGAATGTCGGGAAAGACATTGTACTTATGGCGCAAACCTTAC
AGCGACTGTCCAATGGAAGATTGGGGATCAAGTGCAAGGACATACTAGTA
GAGTACTTGGCAAGGTACCTATGATGGTCAAGTCAAGTCATTGTTCATTG
CACGGTTTGACACCAAAAGAACTGATTCGTCAACACGAAGAAGCACAAGA
AATGGGAGGATATTTTATCATCAATGGAATTGAAAGAATCATTCGTATGC
TTATCATGCCCAGAAGAAACTATCCATTAGCTATGGTGCGAAATTCATGG
AAGCAGCGTGGTCCATTATTTACTGAGTTTGGTGTTTCCATTCGGTCAGT
ACAAAAGGATCAGACAGGAAACACAAGTGTTCTTCACTATCTCAATGACG
GTACATGTACTTTCTCATTCATCCATGGAAAAGAACAGTTCTTTATACCA
CTTGCCATCGTCCTCAAGGCTCTCACACCGAACACAGACCAGTATGTGTA
CACCAACCTCGTTAAAGGTCAAGAAGAAAATGTGTTTTTCAAAGATGCTG
TAGCCAATATGCTTCGTGTCCTTCAAAATGAAGGATTGCTCACAAGAAAA
GAAGTCCTCAAATATATTGGTGAACGATTCCGAATCAAGTTTTCGTTGGC
CGAATGGGTTACGGACGAAGAAGTGGCcatttatcttttcaataattgTA
TTCTACCTCACCTCGATAACAATCAAGATAAATTCAACCTTCTTGTGTTT
ATGACACAGAAGCTATTTGACTTGGCGAACGAGAAGTGTGCCGTTGAAAC
TCCTGATAATCCAATGAACCAAGAAGTATTGTTAGGTGGACATGTCTTTC
AAACCGTACTCAAGGATAAGCTGGAGACCTGGCTAACGTCACTTCGTTAT
GGTTTATTGAGAGGGATGAAGAAGATGGGAAATGAGTTCGAATTGAATCA
AGCGACGCTTCTCTCTTGGATGCAGAAAACCATTAATGTTTCGAACGCTG
TTGAACACTTCTTTAGTACTGGAAACATTTCATCCAAAAGCTCGCTTGGA
CTTATGCAGAATACAGGTTTAACGGTTGTAGCGGACAAGTTGAACATCAT
GCGATTCCTTTCACATTTCCGTTGTATTCATCGTGGTGCTTTCTTCGCTC
AAATGAGAACTACTGGTGTCCGAAAATTGCTTCCTGAAGCCTGGGGTTTT
ATGTGTCCGGTACACACACCTGATGGTTCACCATGTGGTCTGTTGAACCA
TTTGGCTGCTTTATGCAAGGTGGAGAACGAGATCAGACCAACGGCCACAT
TACGAAAAATGCTGTTAACACTCGGTGTGTATCCTGAAAACCAAGCATCC
AAACTTCCCAATTTATCAGATTGTTACACGGTGCTTTTGGATGGAGATGT
TGTGGGAAGAATCCATAGAAATCGTGCCGAAGATTTAGCTGCTCAATTGA
GATATTTTAAAGCTAGTGGCAAAGAAGGGATCCCTTCAACTATGGAGATT
TGTTTGATTCAAAAGACGAAATACGCCGGACAGTATCCCGGTCTGTTTTT
ATTCACGGAACCCGCCCGTATGATACGACCTGTCACCAACTTACGCACTA
AAACCGTCGAATACATTGGTTCTTTTGAACAGGTGTATATGGATATTGCA
GTGTGCAAGAAGGAGATCATTAAAAACGTTACCACACATCTTGAGTTGGG
TCCAAGTTCAATGTTGAGTGCTCTTGCAAATTTGACGCCTTATTCTGACT
TCAATCAATCTCCACGTAACATGTACCAGTGTCagATGGGTAAACAAACC
ATGGGAACACCGTGTCAAGCGCTAAAACATCGTTCCGATAACAAGATGTA
CCGTATACAGACGCCACAAGCACCAATTGTACGAAACGAACGATACAACG
ATTACGGAGTCGACGAATTTCCACTAGGTACAAACGCTGTTGTCGCTGTT
ATCTCGTATACCGGTTACGACATGGAAGATGCTATGATTATCAATAAAGG
CTCTCTCGATCGTGGATTTTCTCATGGACAAATCTACAAGACTGAGGTAA
TAAACCTAGTGGAGAAGAAAGGCCGAACATCGACGACACGATTTgGTGCG
GATCCGAAAAGTGGACCTGTAATAAATGGAAAAATAGATTTAGACGGATT
ACCGTTGATCGGGCGTTACATGCAACAAGATGAACCTTATTACAGCTACT
ACAACACGGCAAATCAACAATACAcggtgaaaaaatataaaagcatGGAG
CCAGCCTACATTGAGgatGTGAAGATCTTGGGCAATAATCTCGGCGACGG
TAAAATGGACAGAGTATCTATCAAGTTGAGAATAAGAAGAAATCCGATCA
TTGGTGACAAGTTTGCCAGTAGGCACGGACAAAAAGGGATTCTCAGTCAA
AAATGGCCAGTGCATGATATGCCGTTCACAGAGAGTGGTATGGTACCAGA
TATCTTGTTCAACCCTCATGGTTTCCCCTCTCGTATGACTATCGGTATGA
TGATCGAATCAATGGCGGGCAAATCAGCCGCCCTTCACGGTATCACCCAC
GATTCAACGCCCTTCAAGTTTTCGGAAGATGATCCTGCTGCTGATTACAT
GGGTGATATGTTGCTAAAAGCTGGTTATAATTATTACGGCAACGAGACTT
TGTACAGTGGAATTAATGGTCAAGAGATGGGCGTCAGTATTTTCGTCGGC
ATCGTTTACTATCAACGTCTACGTCACATGGTCTCCGATAAATTTCAAGT
CCGTACGACTGGTCCAATTGACGTCCTCACGCATCAACCGGTCAAGGGTC
GGAAGAGACATGGTGGTATTCGATTTGGAGAAATGGAGAGAGATGCATTG
ATTGCACATGGAAGTGGTTTCCTTTTGCATGACAGACTCTTCAATTGTTC
TGATAAATCAGAGACTCATGTTTGCACGAAATGTGGAAGTTTGATCAGTC
CAACGTTCGTCAAGATACCTGAAGAACTCGCTAAGATTTCCTGTGATAAA
AACCAATGGATTTGCAAAACGTGTGAAAATGGAGACCATATTACAAAAAT
GGTCGTTCCGTATGTTTTCCGATATTTACTTGCGGAACTGACTGCAATGA
ACATTCGAGTGACACTAGATGTGAAATAAACCCAACGAACTTTCACagga
ttatttttttgtattctgGAAACAGCCCAACCTGTTTTTTATATGAGATC
AGCAACTCAAAATTatataaacataaacaaagataGAAAAACTAAAAGAA
ATCAATAAATATTATACCACTT

Run BLAST on NCBI

transcript from alignment at scaffold_361:898544..911985-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062026 ID=TCONS_00062026|Name=TCONS_00062026|organism=Clytia hemisphaerica|type=transcript|length=13442bp|location=Sequence derived from alignment at scaffold_361:898544..911985- (Clytia hemisphaerica)
AACAATTTCAAAATGTTTTTGGTGAAGATATACAATTCATTTATTCCAAA
TGGCATTTCCACAAATTGGTTTTCTCCAAACTTTTCACTGAGTGTCCTGA
GGAGGAGGAACTTCGACATCAAATTTACTTTACTCTTGTGGCACTGATCG
AACAAAGAGACCCTGAAAACTTCAAAGACATTGCTTCAGATTTCTTCCAT
TCATACAAGGTCAAATGTCTCAGTATTGTAACCTTCATGGCTGACCTTTA
CCTTACTGAACCAGAGAAGTGGGCACTATGTTACCGCAAACCAGAATTTC
ATCACTGTGATATCTTCATGCACATCAATACAACTATTCAATCATTACGA
TTGTCGCTTGGTTCTTTGAGAGAACAAGTCTCCATTGGTACTTTACTCAA
TACCTTACTCAATAACGACCATTCAGTGTATTTGAAACAAAGATGCCAAC
AACAGCTTGCTGAGATAGAGCCTTCATCTCATGTCACATCTCTCGGCATC
TCCGATGAAGACATGAACAAAGTCTCTGATACACAATGGTTTGTTACTCA
CGATGAATCAGTTTATGAAGTCAATTGGAACTCTGATGGCTGTTTGGAAG
AATTTTGTCCAATCAGATGTTTGGAGCTGCTTTGTTTTGGCTTGTGTGAA
CACATGTATACATGTAATTGTCAAACTGATGTTAACGATATTTGCGCCCA
CATTCACAAAGTTCACTCCTTTGAAATGGGTGTGTCACACTGCCAACAGA
CCCCTGGTGCTGAATCTGAACTTCCAGAGGGGAGTAAGAAGAAATTCAAA
TTGTATGCTCGAACAAGCAAAAATAAACAAGAATCAAGGCATTCAATCAA
TAAGAATCTTGAATTTCTACGACAATTCGTCACTGAGGATCCTTCTCAAG
AATTATTGGATGAAATCAAGCAAACACTTGACCATTTGAAATCCATCTGT
CAAAAGTCCAAGCGGAAAAAGCTATAGGTATAAATTCGAAAGGATAGTCC
AAATTTTGCTTTATTTTTTTAGACTCCAAAACACAATTTTGAAATTTAAG
GATATTTCCTTTTAAAGCATCGCACTTACTTAAAATTAATATCTTACATG
CTGAAACATGTATTATATACTTCTAGCATGTGCATATAATATGTCAAATT
AACTTGTGTATAACATTCTGGATTCAATAAACCATTTTCAATTTTCTGTT
CCAGCTTATTCCACCTCAACATTTTGAGTTGCCAGATGGTAGGAGGGCTG
AAATACGATTCTTGGTAAGTTTATACATCTAGGTTTGTGGGAAGGCATTT
GGTAAGTTTGGTTACTTATTTCTTGAAGCCCCATGGAGCTATACACATTA
CACAATAATTTGTATATAGTAGGCAGTGTGCTGATGAGTCCCAATGAGGA
CGAAATGCATACACCTGCTCTGCCACCCAAATCTCTAGAGTGAATATTTT
TAGCAGTATGCAGCGCTGACGAGTCCTAGTAAGGACGAAAGCCATATGCT
GCTCTGCCACCCAAATCTCCTGAAAGAAAATGGTTGAACAGAAATTCTTT
TAATTTCTTCACATATATATTATTGTCAGGCTATTTAGTGACAATATATT
GCTGAGTGCGCCGGCAACATATTGAAAAGATTTGCAATTATTCTAACAAT
AATTAGGGTCGTTTACAGAAAGAAAATTTCTTTTAAATAAAGTACCTGTT
GTTTACTTAATTAACATTAGGGTCTGCAAACCATATTGTCGAATATTGCT
CGTCAATATATTGTGTAGTCTAACTAGCCCATAATGCTTTTTAATCAGCT
GAAAGTAATGCGAAAATGTTTGTTTTCAATAAATGGAGATAGCAGGAAGT
GATTTTTATTTTAATTCATTATTTCGATTCAGAATGCAGATATTGGGCAT
CCAATGGTAGATGAAAAAGATGTGACTTCCAAAACGACCAGGATATATCC
TGCTGAATGTCGGGAAAGACATTGTACTTATGGCGCAAACCTTACAGCGA
CTGTCCAATGGAAGATTGGGGATCAAGTGCAAGGACATACTAGTAGAGTA
CTTGGCAAGGTACCTATGATGGTCAAGGTTAGTCAATCATTTTAAATTGG
TTCAAGGGTTAAAAAGACCAGATAATCAGTCTTGCGAAGAGTTCTGCACA
TTCTTGTGTCTCAGGCATCTCGTAGAAGCGTATCGCTTTACATTAAAGTT
GTTCAAATCAAAGATGCGTCTCAAAAATTTCATCTACAAATCTGGATTAA
TATCTTTATTTATACTAACATTCGCTGTAATAAAAGGAACTTTATGTTTC
TGAAAGGTAATGTGGCTTACATTTGACTTACTTTGAGATTCTTCAAAAAG
GATTCATCTTATTAAGACTATGAAAGATTGCAGTCTTCAGAGAAAAAAGT
CTGACCAGTTAAAAAACCAGTGAGCAAGATTTTTTATCCTTTGTTTCTTT
ACTTCAGTCAAGTCATTGTTCATTGCACGGTTTGACACCAAAAGAACTGA
TTCGTCAACACGAAGAAGCACAAGAAATGGGAGGATATTTTATCATCAAT
GGAATTGAAAGAATCATTCGTATGCTTATCATGCCCAGAAGAAACTATGT
AAGTCAATTTTGATGTTACAATAGCATTTTCAACTTCATTTACTCTTATC
GCGCTTGTTCAGCAGCCAAAATTCGACATTATAATCAAACAAATTTTATA
TAGTTTTTATAATGATGCCATGAGAGAAAAATTCAAGAGCTGTACCGCAA
CACTAGGCAATTTTTGTGAAAGCCACTTCCGTCTTCATTTCTTTGACACA
TGTTAAAGTCGTGTTATATTTTGAAATCTGACACACTCCTACTTCATGAT
ATCATTTAGCTCTCTAATACTTGTCTTCTTTAGCCATTAGCTATGGTGCG
AAATTCATGGAAGCAGCGTGGTCCATTATTTACTGAGTTTGGTGTTTCCA
TTCGGTCAGTACAAAAGGATCAGACAGGAAACACAAGTGTTCTTCACTAT
CTCAATGACGGTACATGTACTTTCTCATTCATCCATGGAAAAGAACAGTT
CTTTATACCACTTGCCATCGTCCTCAAGGTAAACACAAGTTCTGTGGTTT
TTGTTGGACAGATAAGCGTTTTCATTTATGAGTAATTGAAACATTCAATT
ACCTATCGTTCAGCATGTGCATTAGCGAAACTTCCTCATTGCCATTCCTT
GTAAAATATTCCTGGGGACTTCCACTGTAGATTTTCATCAGGGATACTGG
TAAAAATACGTTGCCTCGCAAATTAAACTTACTTTTCACCCACCCAAACT
CTTTAATTTCTTTCCCTTTGTATTGCTTTGGCAATTCCTAGAAATGAAAA
AAATTCACCCGATGTACGGTAACTTACTTTTTTGGAATGCTTTCATGATG
CTTTTCCCGTATTTTTTATGTTTTTATGTGTAATAAAATCGCTTTTATCT
CCCAATGAACAGGCTCTCACACCGAACACAGACCAGTATGTGTACACCAA
CCTCGTTAAAGGTCAAGAAGAAAATGTGTTTTTCAAAGATGCTGTAGCCA
ATATGCTTCGTGTCCTTCAAAATGAAGGATTGCTCACAAGAAAAGAAGTC
CTCAAATATATTGGTAAGATGAAATACGAATCTAAATTTACAGTAGAAAT
ATTGAGGGAAACTCACTGACTTTTATAAACCCTGGACTAAGCTTTTTTTG
CCATCTATGAACGGAGTTATTCTGAAGTTGGTCTCCTTAAAGAAGCCGCA
GTGCTACCTTCTGTTTCAAACGGCGCTACAAATATCTAGGCCTGGCTTGA
TCTAGCGCTTTTCCATGCCTGCAGAGGGTTTATATAAAGCTCATTGGGGA
AAACAATAAATCGCTGCTCGTTTTCATTTCCATAGGACTATGAGACTCCA
TTTTAAAGGCAATGTCTGGCTCACCTTCATCGACTCCTATAAAATTGCAT
GCTTGTTGAATGAGGAAAGTTTACAAGGTTACAGAAGGTTTCCAAGTATA
CCTTTTCCATTAATGTGCATAAACTTTATTCTCCCAATCATTAGGTGAAC
GATTCCGAATCAAGTTTTCGTTGGCCGAATGGGTTACGGACGAAGAAGTG
GCCATTTATCTTTTCAATAATTGTATTCTACCTCACCTCGATAACAATCA
AGATAAATTCAACCTTCTTGTGTAAGTAATTGCTTGACTTGTTAACCCAT
TAAACGCGTTTTCTCTGTAACTTCAAATTTTCAAATACTTTTGATTTTAA
ATGCGCCTACCCACCCAACTAAGGAAAGAATGCCAATCTGGACTTTTTAG
GTTTTTGAAGACAGGGGAAAAAGGGTGACATAGATCGCGGCGATCCTAGA
TTCGACCTACAGGTACAGGACCGTAACAATTTGACACTCGTATATGATGC
CAGCACTTAATAAGTTGACTGCAGAATAGAAGGATGGTTAAAAGTCAAAA
CCTTGTTCATATATTTACCGAAGCTCTGCGGAAGTAAAGCTTTGAGCATT
CTTTAACTAAATTTGACCTCGAAACTTAAGCATTAAAACTAAAGATTGGA
GCCTTCTCTAACTAAATTTAATCTTGAACTTAAGCATTAATTAAATAAGC
AACAACGGCGAAATCGATTCCCAGGAAAAAACCTAGTCATTTCTTGTGAT
CTGTTTTAGGTTTATGACACAGAAGCTATTTGACTTGGCGAACGAGAAGT
GTGCCGTTGAAACTCCTGATAATCCAATGAACCAAGAAGTATTGTTAGGT
GGACATGTCTTTCAAACCGTACTCAAGGTTGGTTCAATTCTCTTGACTGA
CCAATCCTAAATTCTTTTTACTTGCTATTTGGTTCTTATAATTGTTCAAG
ACTTCTCTTCGTTTTATTGTTATTGGTTCATAGTATGATTCTTGAATCTA
CAATTCTACATATCTTGATTTTATGACGTTCTTGGACGTTCCCCACGAAA
CTGTAAATCTTCCACAAGATCCATTGGTGGAATAATAAAAAAAAGTTACA
GACGGAACGGTTCTTAGAAGAATACAGTGTCTGTTTGTCACAAGCTATCG
TATGGGAAGTCCTTACGCAAATCTACCGAATCAATCCCCAAAAACCTTTT
AATAAGTGTCAATTTCATGGTTTTTGCTCTCTAGGATAAGCTGGAGACCT
GGCTAACGTCACTTCGTTATGGTTTATTGAGAGGGATGAAGAAGATGGGA
AATGAGTTCGAATTGAATCAAGCGACGCTTCTCTCTTGGATGCAGAAAAC
CATTAATGTTTCGAACGCTGTTGAACACTTCTTTAGTACTGGAAACATTT
CATCCAAAAGCTCGCTTGGACTTATGCAGGTAAAATACATACAGAAACGA
ATAGATTCTAATCATCTTATATAGATTTCAACAGATTTCATCATGGTATC
TTTTGGTTAATGGATGGCTTATATCAAAGTATCGAAAAAAATGAAACAGT
GTAGGCCGTTAGAAAGTGATTCCAATATCGAATTCAATGATTTTGAAGTG
TAAATTAGTAATTAAAATTCCAACTAGAATTTATCTGGATCTAGATGAAT
AACACTGTACACATCCTGGATTTCATTGAGGAACGCCATGCTTTGAGTGA
TTTATATTTCTCCAATTTTTCCATTCTAGAATACAGGTTTAACGGTTGTA
GCGGACAAGTTGAACATCATGCGATTCCTTTCACATTTCCGTTGTATTCA
TCGTGGTGCTTTCTTCGCTCAAATGAGAACTACTGGTGTCCGAAAATTGC
TTCCTGAAGCCTGGGGTTTTATGTGTCCGGTACACACACCTGATGGTTCA
CCATGTGGTCTGTTGAACCATTTGGCTGCTTTATGCAAGGTAAAACGTCT
CTTTGCGTCTCATCTCTTGACTGATTCATGATACGAGGGCTCATTTGAAG
GTGATTTGGTTGGTGTCCTTTCTTTTGAATACTGTAGTAGTTACAGTCGA
CAAATAATTGAGGAGGAAAGATCTACAACAGATCAGAGAGAAATGACCAT
GATCAAACTTGTGAAAAAATAGCAATCAGGGTTTCACTTTTCTTCAATGG
ACAAGTTGGGTGAAATCAGTTGTAAATTTCCGATACGAATAAGATAGGAG
ACATCTGCACTCGCAAATTTATATTCTTAATTCTACCCAATAATTTGCGT
ATTACTTTCTACTCTTGGCCGGTTCGTGTAGGTGGAGAACGAGATCAGAC
CAACGGCCACATTACGAAAAATGCTGTTAACACTCGGTGTGTATCCTGAA
AACCAAGCATCCAAACTTCCCAATTTATCAGATTGTTACACGGTGCTTTT
GGATGGAGATGTTGTGGGAAGAATCCATAGAAATCGTGCCGAAGATTTAG
CTGCTCAATTGAGATATTTTAAAGCTAGTGGCAAAGAAGGGGTGAGTTAC
TTTTAAGTCAACTCACTCTAATCCGAACTTCTATGATTCGAACTAAAACA
TTGATCCCCTAAGCTTGAAAGTAACGTAAAATGCTCTCTATAATTCGAAT
AAGATGGTCTTACCCAAAAGCTTTACTTTATCATTAAAGAATGGCTACTT
ATTATATGAATTAATTGTAAAAAATCTTTCATCTTTTGCAGATCCCTTCA
ACTATGGAGATTTGTTTGATTCAAAAGACGAAATACGCCGGACAGTATCC
CGGTCTGTTTTTATTCACGGAACCCGCCCGTATGATACGACCTGTCACCA
ACTTACGCACTAAAACCGTCGAATACATTGGTTCTTTTGAACAGGTTTGA
CATATATATTCCAATAATATCTGAACAAACATTAAAGCTAGAAGTGCTGC
TTTCACCAGATAATTAGCTTTAACATTTACAGTGTATTTAACTTCACCCC
CTGGTATCTCCAGCTTGTGTGTCAATTTCCTGACTGACCACTATTCCTTT
ACTTATAGTAATTGAAAGAGGAAAGTCAACCGTGGAAAAAAGCAAAACGG
TGCAATTGTGCTTAAACGGATTCATTCAAAGCACTGTCATAAAATTTAAG
ATTCTCCTACCAGGATTTATTCTACTTAAAACTTGGTTTGTGGGGGAACC
TTATGTAAAATGGCTTTTTCTTGATTAACAGGTGTATATGGATATTGCAG
TGTGCAAGAAGGAGATCATTAAAAACGTTACCACACATCTTGAGTTGGGT
CCAAGTTCAATGTTGAGTGCTCTTGCAAATTTGACGCCTTATTCTGACTT
CAATCAATCTCCACGTAACATGTACCAGTGTCAGGTGAATGAAAAAGTTG
TTCTATGAGTTCTTTGATCATCCTTTAAAATGTCAAAGAGTCCATCACCA
ATACTTGCATTTCTCTCTCCCTTCTTCAATTAAGTTGAGTGATGTAACCT
TGTAAATACCATTACTTTGTAACTTTAAATTTTCAAATATTCCAAACTCA
CATCTAAATCATTCCATTGTTTTCTCTTAAAAAAATCTTTGTTCTTTAGA
TGGGTAAACAAACCATGGGAACACCGTGTCAAGCGCTAAAACATCGTTCC
GATAACAAGATGTACCGTATACAGGTAAACTTCAATATCTACGGAAACAT
TTCGACTTTCCCAGTAGTGGCAAAATTTAAACAATTTTTTCTCTAGCTTG
AATTTGCCACTGCTTACAAAAACCGGGGTGTTTCTGTAGAAATCATTACG
TCACGAATATCTTGAATAACCCTCATACTTTTCTTTGTTTTGTAACTTTC
GCTTTGAAGACATGGATAGAGAACCACAATGTATTTTTCTTATAGACGCC
ACAAGCACCAATTGTACGAAACGAACGATACAACGATTACGGAGTCGACG
AATTTCCACTAGGTACAAACGCTGTTGTCGCTGTTATCTCGTATACCGTA
AGTTTTTTTAATGTTTTCTCTGTATCATGATGAAGGGGTATCAGAAAATG
AAGTGTTTACTGGATCCAAAATTTTATTCAGATTCAAGTTTTTCAAGTTT
TTCATTCGACATTGATGGCCATAATGATCTTAGGGCGTCATCTTCTCTAA
TCAGCGGTTCCAGGAGCAACATTTAGTTTGTTTCATTTACAGTTACTTAA
TTAGACAGGAAAAGTGTATGGTAAGCCTTTTGCATTTGCAATTATTCTTT
CTTCAAATGATCTGTTAACTCAGTTCATACCGTGTCAATGTATATTGTGT
GTTTTTCTGTGGCGGAGACGGTAAGGTTCTAATTTGACTAGATCCTGACC
AGCTGGGGACGACGGTAAATCAGCACTTTTACCGTCCTTGACTTTGCGGG
TCAGAACTACCAGTTATTCCAAATCGCTTCAGTCACCCTATCATCCTCAA
AAGTGCAAGTACATAAACTCGCCTTTATATAATATAGAAACGGGTTGGTC
GTCTCAATCGAAAGACCCCTAGAACAATGGCTCATCTCCGCAATATAAAT
TGGTGTTAAAATGTTTATATTTTCTAAATTTCGTTTCAGGGTTACGACAT
GGAAGATGCTATGATTATCAATAAAGGCTCTCTCGATCGTGGATTTTCTC
ATGGACAAATCTACAAGACTGAGGTCTGTTCATATTGTCCCCATTTTTTG
TGTTGGTAATCTTACTATAGCCCTATTCCTAGTTTGATCAGAGGCGGTTG
ACTCTTCTTAAAATATGTCTTGTCTTTAAGTCCTTTACGAATTGCAATAT
TTACCAACGAAAACACCTAAATTTTAAATCTGCTGCGCTCAATGCCTGAT
GCTTTTAAAAAATTTCATCTTCTTTTTCAAAATATTTCTGGTTTTTTTTG
TTTGGTATTCTTTTCAACGAGCGCGAAATGGCCATCTTCTTCGTGAACTG
TCTTTATGAGACGGACTTTTGTACTCTTTTTGTATTTCAAAGTTCATTTT
TTGTCGACAGGTAATAAACCTAGTGGAGAAGAAAGGCCGAACATCGACGA
CACGATTTGGTAATTTTTTCTTTGTTTAATTGAGCTATTATCTGACGATA
TCAGTTTTATGTGCCTAAGGCTCGAACTTCCTTTTGAAACTGTATTAGCT
TTGCCGCATACAAACTCGTTCTCGGATTTCACAATCATTTTTTTATCAAG
TCATACAAAATGAGACACATGCTTCGCAGCGAAATCAATTGAGCTGAATG
GATGAATGAATGTATAAATAATACAGCGTTTTCAGCAATTAACCTGAGTG
GTGGTTTTAAATTTCAGGTGCGGATCCGAAAAGTGGACCTGTAATAAATG
GAAAAATAGATTTAGACGGATTACCGTTGATCGGGCGTTACATGCAACAA
GATGAACCTTATTACAGGTTAGAATCTCGCACTGATATCCCCTCAATCAT
GAAACTAACAAACTGTTTGAAACCAGGTTAATTATCAAAGTTTAGCACAA
TTTTTGAGAAACTCCTTACTTGTTACCCACAGCTCTGTGGAGACCAAGTG
GTCTAAGGCGTCAGTGCCACAAACCAGGGATTCAGGTCATAGATAGCCGA
GCTGGCTGGCCAGCCGGCCGTGGTTAGGTCCTGGACTATCACGTAAAATA
TCGACTTTCATCTATCTATCTAGCTACTACAACACGGCAAATCAACAATA
CACGGTGAAAAAATATAAAAGCATGGAGCCAGCCTACATTGAGGATGTAA
GAATATTTTGACACTCAGTTTCTCCCTTTTGTTGTATCTTTCAAAGAACT
TTTTAAATAGGAATAATGAAATTAGATACAGTCTTCTTATCAGTTTGTAT
ACCTCCACAATTATTAAGTGAGATGCGATAAGTGACAAATTGAAACTCTT
CTATTATAGGTGAAGATCTTGGGCAATAATCTCGGCGACGGTAAAATGGA
CAGAGTATCTATCAAGTTGAGAATAAGAGTAAGAAAATTTTGTATTACAT
CGTTTTTATTTCTAACTCCTTGAAAGCTCCTGCTTTTATAATACACTTTG
GCTTTAACAAGATCTTAGATCCTAGCTATCTTATGCCCATACCCCGATTG
GTACAGGACAGATACGACAAATATGCTTCGACAAATCAGTATTTATGTAT
CGGTCTTTTATCTTTTTAGAGAAATCCGATCATTGGTGACAAGTTTGCCA
GTAGGCACGGACAAAAAGGGATTCTCAGGTAAAAATTCATATTTATTCTT
TAACCAAGTTTTCTGGTCCCTTTAGGAAGCAAACTCTTCCAGATAAATTC
TCTCCTTAAATTCTTAATTTTTCAATCTTTCAAAAAAAGATTGAAAGGAT
TTGCTATATTATTCCCTTCAAAATTATATCTCCAACGGTTAAGCTATCCG
TATACACGTGTTTGGTCGCATATCAACATTAGTCATTAAGCAAACATATG
CTCGTCTTATTCCTTGGTTTTGTATCAGAAATCTTCATCACTCAACTCAA
TTTTGTTTCAGTCAAAAATGGCCAGTGCATGATATGCCGTTCACAGAGAG
TGGTATGGTACCAGATATCTTGTTCAACCCTCATGGTTTCCCCTCTCGTA
TGACTATCGGTAAGTTACTCTGTTCGTGAGGTCTTTTCAAAAGCATCAGT
TCTCCTACAAAGGGATCCCACGACTTTATTCTTAAAGCTCTAGTTTACTG
AGAAATATATTTCACTTGTCTATTATCCAGTACATAGATCATTTTTACAT
CATTTTAACTTTTTGTTTGTTATTGCTTTAGGTATGATGATCGAATCAAT
GGCGGGCAAATCAGCCGCCCTTCACGGTATCACCCACGATTCAACGCCCT
TCAAGTTTTCGGAAGATGATCCTGCTGCTGATTACATGGGTGATATGTTG
CTAAAAGGTGACTTCGCTTTTTTTTTAATAAGAAAGTGTACTTTGGATGA
GGGTCAAGGATTCTTAAGAAATTGCCAAAATTGAGGATGAAATATTCTTA
ACGTATTCTTACTTTTTTAGAATTGACTTTTTTACAAACATGAGAAATGA
TCAATTTGAGGGTTTTGGACTTTTGAAGATTTGGGTTAAAGTTACATTTC
TTCCTCAAAGCTTTCAATTATCTTTAACACAGGAAGTGGTTTTATATGTT
AACCAAATACAAAATGACTGTATTCTTATTAAGTTCTATGAAATTCACCC
TAAAGGGTATTCTTAGGGTATTCTTACGACTTGGCCAATTTTCACCCTGA
TATTCTTATAGAAGATATTCTTATAAAAAAAGCGTTTAATTATCGGGAAA
GAATTTAATTTTTCATACTTTCTTTCAGCTGGTTATAATTATTACGGCAA
CGAGACTTTGTACAGTGGAATTAATGGTCAAGAGATGGGCGTCAGTATTT
TCGTCGGCATCGTTTACTATCAACGTCTACGTCACATGGTCTCCGATAAA
TTTCAAGTAAGTTGAATAATCGATATTTAAACATTCGGAAGCAGTTGAAG
GAAGTGATAGCGTATACCATGGTAAACTGTTAAGGTGTCATCAGGTAGGC
ATTGTCTAGTGCTCATAGAAACATTTCATATTATTTGGCTACGTTCTGCA
AAGCAGCTGATATAAATGATAATTTACTTTAGCCGTACAAACTTTCGCGA
GCAGAAACTATCGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAA
ATGTCTTTAAAAATTCTGGGAAGGGCCATTCGCGAAAGTTTATGCTCGTG
AAAATTTCTTGACAAAATAGAAAATCTGTAAAACTTCATACTTTGAATAA
AATGTAACTTTTATGACACTATTTGGCATGTTAAAAGACTAATGAGTCAA
AGGACAAATGTTTCAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCAT
TTTTTCATGTGAAAATTCTCAATTTTACGTCTTGATTCGCGAAAGTTTAT
TTCCGTTAAATTCGCGGAAGTAAATAGTCGTGAATTTCGTGATTTTTCGT
CCTCGCGAAAGTTTGTACGCCTAAAGTATATCGTTTTTTTACACTAGTAA
GGTATCATAAAAATAAGTTTTTATTTAGTGCTCCTAGAGTCATTTAAGTT
AAAATTCTATAGGAATAGGAAATACAAAGTGATGTTTCTCAGTGATGCAA
GTTTGATTAAATAATTGAAAGATNGAAATTCAAAGTGATGTTTCTCAGTG
ATGCAAGTTTGATTAAATAATTGAAAGATTACTCGAATGTTTTTAATTTT
TTGAAGAAAAATAAATTTTGAAGATTACTCGAATGAAAGATAGGACAGGT
CGTGTACTGTGAAATATCTTTTTGTAGAATGAAAATACTTCAGTGATATC
TAATTCGTTGTCCGATTCAGAATCGAAGATTGCGCGTGCTGTAAGTCTTT
AGTAGTAGATGTAGATTGGTTTTTGTTATTCATGACGTAATGTTTTATAC
GGAAGCACCCGAAATAACTCGGGTGTTGTTTGCCACTAGTATTATTTTCA
TAAGTGTCAAACACTCGCTCTTTTTATTGCATTCGTATAAAACATTCCAT
CATGAATATTACGAAATTTATTCATAGTTTTGTAAATGTAGAGGAATTCC
TTTTCAGTATTAACGCGAAATGACATTTTTAGCTATGATTTATCTATGTG
TTCTTTTTACAGGTCCGTACGACTGGTCCAATTGACGTCCTCACGCATCA
ACCGGTCAAGGTAACTCCTTAGAGTTTCATACCCATGGCTGCCCCATGTT
TGACCCTTTTTTTAAGGTGAATATTCTGCATTCTTTCAAACTCAAGTCTA
TTTGAAGATATATATTATGGACCTTTGAAGAATCCAAAACAACAGGAGAG
CTTTTTCAGAACGTCCCCTATTTCTTGAAACATTACCAAAATAAATGAAA
TACATCAACAACTTGCTATTTGACAGGGTCGGAAGAGACATGGTGGTATT
CGATTTGGAGAAATGGAGAGAGATGCATTGATTGCACATGGAAGTGGTTT
CCTTTTGCATGACAGACTCTTCAATTGTTCTGATAAATCAGAGGTAATAA
TCTCGTGAATATCTTTTCAACAAACACAAACAGTTATCCAATTCAAAATT
TATTAATAGTGATAGCCTATAGTATTATTGTCAGACTAAATTGCTGATCA
AGCTAGAATTATGTGATATACGTTAAAGTTCGGAAAAGACTAAAATGTAA
GATAAAAACTACCTTCAAATTCTCATTTTATAGACTCATGTTTGCACGAA
ATGTGGAAGTTTGATCAGTCCAACGTTCGTCAAGATACCTGAAGAACTCG
CTAAGATTTCCTGTGATAAAAACCAATGGATTTGCAAAACGTGTGAAAAT
GGAGACCATATTACAAAAATGGTCGTTCCGTATGTTTTCCGATATTTACT
TGCGGAACTGACTGCAATGAACATTCGAGTGACACTAGATGTGAAATAAA
CCCAACGAACTTTCACAGGATTATTTTTTTGTATTCTGGAAACAGCCCAA
CCTGTTTTTTATATGAGATCAGCAACTCAAAATTATATAAACATAAACAA
AGATAGAAAAACTAAAAGAAATCAATAAATATTATACCACTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038877	XLOC_038877	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_361	supercontig	scaffold_361:898544..911985 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.54863	6.26825	3.63028	1.65003	5.71467	4.63596	6.86397	8.89858	4.31108	5.39668	4.87318	2.94112	2.98102	2.42249	3.08304	3.27781	4.69361	3.80185	1.14471	3.10256	4.57677	4.51243	3.13277	4.587	4.12649	3.77521	1.88723	2.15157	2.46372	3.02972

Blast

[Close]

BLAST of TCONS_00062026 vs. Swiss-Prot (Human)
Match: RPA2 (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2)

HSP 1 Score: 1208.36 bits (3125), Expect = 0.000e+0
Identity = 584/1082 (53.97%), Postives = 756/1082 (69.87%), Query Frame = 3

Query:  981 IPPQHFELPDGRRAEIRFLNADIGHPMVDEKDVTSKTTRIYPAECRERHCTYGANLTATVQWKIGDQVQGHTSRVLGKVPMMVKSSHCSLHGLTPKELIRQHEEAQEMGGYFIINGIERIIRMLIMPRRNYPLAMVRNSWKQRGPLFTEFGVSIRSVQKDQTGNTSVLHYLNDGTCTFSFIHGKEQFFIPLAIVLKALTPNTDQYVYTNLVKGQEENVFFKDAVANMLRVLQNEGLLTRKEVLKYIGERFRIKFSLAEWVTDEEVAIYLFNNCILPHLDNNQDKFNLLVFMTQKLFDLANEKCAVETPDNPMNQEVLLGGHVFQTVLKDKLETWLTSLRYGLLRGMKKMGNEFELNQATLLSWMQKTINVSNAVEHFFSTGNISSKSSLGLMQNTGLTVVADKLNIMRFLSHFRCIHRGAFFAQMRTTGVRKLLPEAWGFMCPVHTPDGSPCGLLNHLAALCKVENEIRPTATLRKMLLTLGVYPENQASKLPNLSDCYTVLLDGDVVGRIHRNRAEDLAAQLRYFKASGKEGIPSTMEICLIQKTKYAGQYPGLFLFTEPARMIRPVTNLRTKTVEYIGSFEQVYMDIAVCKKEIIKNVTTHLELGPSSMLSALANLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMYRIQTPQAPIVRNERYNDYGVDEFPLGTNAVVAVISYTGYDMEDAMIINKGSLDRGFSHGQIYKTEVINLVEK-KGRTSTTRFGADPKSGPVINGKIDLDGLPLIGRYMQQDEPYYSYYNTANQQYTVKKYKSMEPAYIEDVKILGNNLGDGKMDRVSIKLRIRRNPIIGDKFASRHGQKGILSQKWPVHDMPFTESGMVPDILFNPHGFPSRMTIGMMIESMAGKSAALHGITHDSTPFKFSEDDPAADYMGDMLLKAGYNYYGNETLYSGINGQEMGVSIFVGIVYYQRLRHMVSDKFQVRTTGPIDVLTHQPVKGRKRHGGIRFGEMERDALIAHGSGFLLHDRLFNCSDKSETHVCTKCGSLISPTFVKIPEELAKISCDKNQWICKTCENGDHITKMVVPYVFRYLLAELTAMNIRVTLDV 4223
            IPP  F   D  R     L+A I  P V  K    K   +YPAECR R  TY   LTA + W +    +G   + LG VP+MVKS  C+L  L P+ LI  HEEA+EMGGYFIINGIE++IRMLIMPRRN+P+AM+R  WK RGP +T++GVS+  V+++ +     LHYL +GT   +FI+ KE FF+PL   LKAL   +D  ++  L+KG+E++ F +++V+ MLR++  EG  T+K+VL Y+GE FR+K ++ +W  +E+ A +LFN CI  HL +N +KF +L  MT+KLF LA  +C  + PD+ +NQEVL  G +F   LK+KLE WL S++    +  +K      +N   L+      I+++   E+ F+TGN+ SK+ LGL+Q++GL VVADKLN +R+LSHFRC+HRGA FA+MRTT VR+LLPE+WGF+CPVHTPDG PCGL+NHL A+C+V  +   TA++  +L  LGV P + A    + S+CY VLLDG +VG + ++ A  +A  LR+FK   ++ IP  ME+ LI  T     YPGLFLFT P R++RPV NL     E IG+ EQ++M++A+ + E+   VTTH EL P S+LS +AN  P+SD NQSPRNMYQCQMGKQTMG P    + RSDNK+YR+QTPQ+P+VR   Y+ Y +D +P+GTNA+VAVISYTGYDMEDAMI+NK S +RGF+HG +YK+E I+L EK K   S+  FG  P   P +  K+D DGLP IG  +Q  +PYYSY N    +  V  YKS E   ++++K+  N+ G GK   V I +R+ RNP IGDKFASRHGQKGILS+ WP  DMPFTESGMVPDILFNPHGFPSRMTIGM+IESMAGKSAALHG+ HD+TPF FSE++ A +Y G+ML  AGYN+YG E LYSGI+G E+   IF+G+VYYQRLRHMVSDKFQVRTTG  D +T+QP+ GR   GGIRFGEMERDAL+AHG+ FLLHDRLFNCSD+S  HVC KCGSL+SP   K P   + +     ++ C  C   D I  + VPYVFRY +AEL AMNI+V LDV
Sbjct:   61 IPPFEFAFKD-ERISFTILDAVISPPTV-PKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQK--TSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHR-SYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKP-GDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMR--NRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134

The following BLAST results are available for this feature:

BLAST of TCONS_00062026 vs. Swiss-Prot (Human)

BLAST of TCONS_00062026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPA2	0.000e+0	53.97	DNA-directed RNA polymerase I subunit RPA2 OS=Homo...	[more]

You are here

TCONS_00062026 (transcript) - C. hemisphaerica