TCONS_00062037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062037
Unique NameTCONS_00062037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062037 ID=TCONS_00062037|Name=TCONS_00062037|organism=Clytia hemisphaerica|type=transcript|length=520bp
TTTATTTAAATGCCAACTAAGGGACCATTTCTTTGAACCTTATTTTCAGC
TGTTGACAGTTGGTAAAGATGTTCttcaaagttttcattttcttcttcct
tgCTTCCCTGTTTCAAGTCTGCGATTCCTGGACATGGAAAAGGACACAGT
GTCGCGGCAGTGAAGATAGCGATATTTATTGTTGGAGGGTTTTGAGCCTC
GATGGTTGGAAGGACCAATATCTTCACGTCGTCAAAGCAACCTATGGTCG
ACTGAGGTCCAGATCATGTTCAAAAAAGGGCAAATTGAAACAAGAGATTG
ATGTGACGAGAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCTAC
CTGTACAAGAATGcgaaagagattttcaaatatGCTAAGTCTGAATATGT
TGGAAACGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGgAT
CTGCCCCACCAACATTTCCTCCACCAACTCAAGTAGCTACGACAAAAGCT
CCTGAATACATAACCAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00062037-protein

>TCONS_00062037-protein ID=TCONS_00062037-protein|Name=TCONS_00062037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MFFKVFIFFFLASLFQVCDSWTWKRTQCRGSEDSDIYCWRVLSLDGWKDQ
YLHVVKATYGRLRSRSCSKKGKLKQEIDVTRAVQRVCHGTKKCYLYKNAK
EIFKYAKSEYVGNEKHLFFNVQFKCKGSAPPTFPPPTQVATTKAPEYITS
Run BLAST on NCBI

transcript from alignment at scaffold_361:1100368..1102874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062037 ID=TCONS_00062037|Name=TCONS_00062037|organism=Clytia hemisphaerica|type=transcript|length=2507bp|location=Sequence derived from alignment at scaffold_361:1100368..1102874- (Clytia hemisphaerica)
TTTATTTAAATGCCAACTAAGGGACCATTTCTTTGAACCTTATTTTCAGC
TGTTGACAGTTGGTAAAGATGTTCTTCAAAGTTTTCATTTTCTTCTTCCT
TGCTTCCCTGTTTCAAGTCTGCGGTAAGGATATATTTTTGAGTATGGGGT
CTAACTTATCTGTCATAAATGAGTTGATCCGGAGGTTACTAAGGCAAAAA
TAGGTGCTTGCTTATGTCGTGTGGAGCGTTGAGTTTTGATTTTCAAGATC
TATCTAAGTGTTACATAAGTAACAAATTATCAAAATTGTCTCTCTAAGGT
TAGGAATCTTCACTTTTTCAGTGTAGTGCAGAGGTTTTTCTCAAAATGTT
TCTCAAAGGTACAATCTGTTCCCGATTTCGTCCCTCAAAACGACACTTTT
TTGCAGATATTTAGTATCCGTGGAAGAGTATGTTTTGGGGCTCCGGTTTG
CCCATATCCTTTATTTTCTAACCCTATTAACTTCTCGGGCTAAGATAGAA
AATTATATAAGCTGTTTACTTTTAAGTTTAGTTTTAGCAGTAGAACTTGA
AACTCAAGTATCTTTTTAATAGACTTTTGATACTTTTTTTTATTCATGAA
GATTCCTGGACATGGAAAAGGACACAGTGTCGCGGCAGTGAAGATAGCGA
TATTTATTGTTGGAGGGTTTTGAGCCTCGATGGTTGGAAGGACCAATATC
TTCACGTCGTCAAAGCAACCTATGGTCGACTGAGGTCCAGATCATGTTCA
AAAAAGGGCAAATTGAAACAAGAGATTGATGTGACGAGAGCGGTACAGCG
AGTTTGTCATGGAACAAAGAAATGCTACCTGTACAAGAATGCGAAAGAGA
TTTTCAAATATGCTAAGTCTGAATATGTTGGAAACGAAAAACATCTGTTC
TTTAATGTACAATTTAAATGCAAAGGTAATCTAAAATTTTAATTTTGAAT
CTACGTGGGGGGTGAGGTCATTCATTTTATTTGCAGATAATGATACCCCT
TTTTAAAACTTGGCACAGCCAAATGGGAGGGTATGATTAGAAAATCAATT
GGCATCATCATTAGTAAAACACTCTATGCTACAGGGTATTTCACAAAAAA
GTATACTGAAAAAGTATTGCAAGTTTTAGAAAGAAGTACTGAACCATTCT
GCTTGGCTTTTAACTTTTACTTCAAAGCAGAGCTACTCAGCTTCCTGTGC
TTAAAACTTAAAACAATTTTGAAATGTCAAGTCTTAAGTACATAAGGTTT
TCAACATTCTTCTTACCACCGCTAAAAGAATTAACTTCAACAAGCGCGCT
TTCATCAACGAGAAATTTGACTTACAAGCTGCATAGGTTTGACCATAAAA
CTGAAAATTTCATCAAGGTGACAAAAAAAGAGAACAATCATAAGAAAACT
GAGTTTATTTTTTGAGTGTACCTTTTTGTGAAACACCCTGTACTTTCAAA
TACTTAATCTCATGGTTGATTGAAATTCGATTGACATTTTTGCCTACGTT
AGTTTGTAATTTCCCGCGAACTTATAATTTCCCTCCTAGATTTTCCCGCA
AAATTGAAATTTCCATCGTTTGGAAATTCATCACCTTTTTTCGAATTTCT
TACTATCTTCGACGGCGTAAGTCAATGGAATAAATTAAAACTCGATTTGC
GTTTCTATGACTTTAGACCTCTTTTTAAAGTACTAGATTGATTTCCAGTG
TTAAATTGACGTCTAATTGTTAGAATTGTTAGAATTTCAATCCAAACCAT
GAGATTAACCAGGAATCCCATGCTTGTTTTCGTGAAATTCTGGATAAATT
ACCCTCGGTCAAATTTCTAAATTTTTCTAATTTCCCTTCTTGCACTCGGA
AAATTGCAAAAAAATTCAAAATTGACCTCGGGAAATTTATCTCGTAACCA
TGAAATTACTAGTACTAATCCCACAAAGAATTACACCATTATTGAAATGT
TTAGCATGTGAACAGGTAAATCTTCCATGTCCAGTTCCAAGCACGCTCAA
GCATTCAAAATTAATTTATTTTAGGATCTGCCCCACCAACATTTCCTCCA
CCAACTCAAGGTAAGCCTTGGAGAGCATTTTCAGTAGCCTCATACTTTTG
AAATTCGAACCTCTTAGTACGCCCTGCAGTAGGTATACGCCCCGTAACCA
TCATCTAAAATAAACACCAAAAAATATCCCCTAAATCCTCAAAACACCTC
TTTTAACAGGATGAAAATTCCTATTGAAATCCCGATGGGGATAAAAATGT
TATTATGCTTGGAGTGCAAGTTTTTAAAATTAAATTTCGAATGCAGATGA
AATGTGAAAGTCAATTTCCCAGTGGGGCTGAAATCCCAGGGAACTTTCCC
ACCGGGGACGAAATTTTTGCCAAATTTTCCATTGGGGCTTGGTTCCCAGC
GGGTCTATGACAGAGGGGTGTCTCAAATAAAATATAGATGGTGCCAAATG
TATTTCATTTCATATTATAGTAGCTACGACAAAAGCTCCTGAATACATAA
CCAGTAA

Coding sequence (CDS) from alignment at scaffold_361:1100368..1102874-

>TCONS_00062037 ID=TCONS_00062037|Name=TCONS_00062037|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_361:1100368..1102874- (Clytia hemisphaerica)
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTGATCTGCCCCACCAA
CATTTCCTCCACCAACTCAAGATTCCTGGACATGGAAAAGGACACAGTGT
CGCGGCAGTGAAGATAGCGATATTTATTGTTGGAGGGTTTTGAGCCTCGA
TGGTTGGAAGGACCAATATCTTCACGTCGTCAAAGCAACCTATGGTCGAC
TGAGGTCCAGATCATGTTCAAAAAAGGGCAAATTGAAACAAGAGATTGAT
GTGACGAGAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCTACCT
GTACAAGAATGCGAAAGAGATTTTCAAATATGCTAAGTCTGAATATGTTG
GAAACGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGATGTT
CTTCAAAGTTTTCATTTTCTTCTTCCTTGCTTCCCTGTTTCAAGTCTGCG
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTGATCTGCCCCACCAA
CATTTCCTCCACCAACTCAAGATTCCTGGACATGGAAAAGGACACAGTGT
CGCGGCAGTGAAGATAGCGATATTTATTGTTGGAGGGTTTTGAGCCTCGA
TGGTTGGAAGGACCAATATCTTCACGTCGTCAAAGCAACCTATGGTCGAC
TGAGGTCCAGATCATGTTCAAAAAAGGGCAAATTGAAACAAGAGATTGAT
GTGACGAGAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCTACCT
GTACAAGAATGCGAAAGAGATTTTCAAATATGCTAAGTCTGAATATGTTG
GAAACGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGATGTT
CTTCAAAGTTTTCATTTTCTTCTTCCTTGCTTCCCTGTTTCAAGTCTGCG
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTGATCTGCCCCACCAA
CATTTCCTCCACCAACTCAAGATTCCTGGACATGGAAAAGGACACAGTGT
CGCGGCAGTGAAGATAGCGATATTTATTGTTGGAGGGTTTTGAGCCTCGA
TGGTTGGAAGGACCAATATCTTCACGTCGTCAAAGCAACCTATGGTCGAC
TGAGGTCCAGATCATGTTCAAAAAAGGGCAAATTGAAACAAGAGATTGAT
GTGACGAGAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCTACCT
GTACAAGAATGCGAAAGAGATTTTCAAATATGCTAAGTCTGAATATGTTG
GAAACGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGATGTT
CTTCAAAGTTTTCATTTTCTTCTTCCTTGCTTCCCTGTTTCAAGTCTGCG
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTGATCTGCCCCACCAA
CATTTCCTCCACCAACTCAAGATTCCTGGACATGGAAAAGGACACAGTGT
CGCGGCAGTGAAGATAGCGATATTTATTGTTGGAGGGTTTTGAGCCTCGA
TGGTTGGAAGGACCAATATCTTCACGTCGTCAAAGCAACCTATGGTCGAC
TGAGGTCCAGATCATGTTCAAAAAAGGGCAAATTGAAACAAGAGATTGAT
GTGACGAGAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCTACCT
GTACAAGAATGCGAAAGAGATTTTCAAATATGCTAAGTCTGAATATGTTG
GAAACGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGATGTT
CTTCAAAGTTTTCATTTTCTTCTTCCTTGCTTCCCTGTTTCAAGTCTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038882XLOC_038882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062037-exon-scaffold_361-1575043694:1102752..1102874TCONS_00062037-exon-scaffold_361-1575043694:1102752..1102874Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1575043694:1101950..1102273TCONS_00062037-exon-scaffold_361-1575043694:1101950..1102273Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1575043694:1100815..1100850TCONS_00062037-exon-scaffold_361-1575043694:1100815..1100850Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1575043694:1100368..1100404TCONS_00062037-exon-scaffold_361-1575043694:1100368..1100404Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1510915933:1102752..1102874TCONS_00062037-exon-scaffold_361-1510915933:1102752..1102874Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1510915933:1101950..1102273TCONS_00062037-exon-scaffold_361-1510915933:1101950..1102273Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1510915933:1100815..1100850TCONS_00062037-exon-scaffold_361-1510915933:1100815..1100850Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1510915933:1100368..1100404TCONS_00062037-exon-scaffold_361-1510915933:1100368..1100404Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1491911889:1102752..1102874TCONS_00062037-exon-scaffold_361-1491911889:1102752..1102874Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1491911889:1101950..1102273TCONS_00062037-exon-scaffold_361-1491911889:1101950..1102273Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1491911889:1100815..1100850TCONS_00062037-exon-scaffold_361-1491911889:1100815..1100850Clytia hemisphaericaexon
TCONS_00062037-exon-scaffold_361-1491911889:1100368..1100404TCONS_00062037-exon-scaffold_361-1491911889:1100368..1100404Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062037-proteinTCONS_00062037-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1100368..1102874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	11.443	15.1853	233.645	305.366	33.3906	42.05	22.1481	18.2085	6.08741	6.72054	146.343	136.572	267.622	297.629	4.69335	5.43804	657.304	889.88
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top