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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062042 ID=TCONS_00062042|Name=TCONS_00062042|organism=Clytia hemisphaerica|type=transcript|length=1554bp
agttaagaaaaaaaaacaaaaaaacaatactattaaaaaaaatacaacta
AAAGTTTACAAATGATGCCATCAACTAATGGGAAATCACAAGAAGAAGAA
GTCAGTGCAGAAGAACTTGAGCGTAAACACTTTCAACATGTCATCAACGT
CTTTATGGCGTACAAGAAATTCAGTGTGGTGCAAATTGAACGTAAACGAA
AGTGTTTATTGAATCTCCCCAAACACCATCAAGCCATGATTCCAACACAA
TTTGAAAGGATAAAAGATTGGCAAGAAGCTTTAGACACGAATCAATCCTT
TTTATCCAAAATCGTGGAATATACTAAGGGTATGTTTGTCAATTCTAATC
TTGAAGGTAGTGATGATTCAAGTCCTATAACTTCGGATGATATTGATCGA
GTGCGAACCACTATTAAGCAGTGTGTTCGTGATTGGTCAATCGAAGGGGC
TGAAGAGCGTAACAACACTTATAAACTTATAACTGATGAATTGATTAGGT
TGTTTCCGGTTGTGGCAAATCGTAAACATATTGATATTTTAGTCCCTGGT
GCAGGTCTTGGCCGCCTTATGCATGATATTGCACGCCTTGGTTTCTGTTG
TCAAGGCAACGAATTTAGCTTGTACATGTTGTTTGCTTCTAATTATATTT
TGAACACGTGTGGCAGTCAGTCCATGGATACCATTCTTCCCTGGTTACAC
CAAACAGTGAACGTGGTTTCAAACGATGACCAAACACGTGGTGTAAGCAT
ACCTGACATTAACCCACAAGATTTGGACGGTAATTGTAATTTCTCGATGG
CGGCTGGTGATTTCTTAGAGGTTTACAGAGAGccaagttgttggaatgtt
gtGGCCATGTCTTTTTTCTTGGACACTGCACACAATGTGATTGAGTACAT
CGAAAGAGCTCATTATATTTTGAAACCAGGTGGCTACCTCATACACTTAG
GACCTTTGTTGTATCATTTCGCTGGTATGGAGAAAGAACAATCAATTGAA
CTCACCTATGATGAAGTCAAACACGTCATGATCAATCATTTCAACTTCAA
GTTGATTAAAGAAGAATTGGGTGTCAAATCATCTTATATTCGTAATGTGC
GTTCCATGTTCACTGTTGTTTATAATTGTGCCTTCTTGGTTCTTCAAAAG
CCTGCAGAACCAATGTAGTAATGCCATCAGACACTGATCATATTAATTGA
CGGCATTTTTATGTCTTACAAACTACCTCAGATTTGGGTGATTCTTTTTT
TCTACTTGTTGTCGTCATAATAAGTCTTACGTTCTTAAAGTatcatatat
ttatttttaaataaatttttattttcctaggGGGCTAACGTACATCATAA
TAcctttttatttcaatgttttcttactttttttttagatgcaaaacttt
tgaaaaaacttgaatATTGTGAAACCAAGTTGGGACATGCTCAACCTTAT
TTCGCCAAAGATTTTCCTGCCCCCTGTTTTATTTGTTATCATCTAGAATT
CTGAAAAACACAAACATCCAATTTTCTTTATCTCTCATTTTATAATCAAC
ATTC Run BLAST on NCBI protein sequence of TCONS_00062042-protein >TCONS_00062042-protein ID=TCONS_00062042-protein|Name=TCONS_00062042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
VKKKKQKNNTIKKNTTKSLQMMPSTNGKSQEEEVSAEELERKHFQHVINV
FMAYKKFSVVQIERKRKCLLNLPKHHQAMIPTQFERIKDWQEALDTNQSF
LSKIVEYTKGMFVNSNLEGSDDSSPITSDDIDRVRTTIKQCVRDWSIEGA
EERNNTYKLITDELIRLFPVVANRKHIDILVPGAGLGRLMHDIARLGFCC
QGNEFSLYMLFASNYILNTCGSQSMDTILPWLHQTVNVVSNDDQTRGVSI
PDINPQDLDGNCNFSMAAGDFLEVYREPSCWNVVAMSFFLDTAHNVIEYI
ERAHYILKPGGYLIHLGPLLYHFAGMEKEQSIELTYDEVKHVMINHFNFK
LIKEELGVKSSYIRNVRSMFTVVYNCAFLVLQKPAEPM Run BLAST on NCBI transcript from alignment at scaffold_361:1145890..1147443- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062042 ID=TCONS_00062042|Name=TCONS_00062042|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at scaffold_361:1145890..1147443- (Clytia hemisphaerica)
AGTTAAGAAAAAAAAACAAAAAAACAATACTATTAAAAAAAATACAACTA
AAAGTTTACAAATGATGCCATCAACTAATGGGAAATCACAAGAAGAAGAA
GTCAGTGCAGAAGAACTTGAGCGTAAACACTTTCAACATGTCATCAACGT
CTTTATGGCGTACAAGAAATTCAGTGTGGTGCAAATTGAACGTAAACGAA
AGTGTTTATTGAATCTCCCCAAACACCATCAAGCCATGATTCCAACACAA
TTTGAAAGGATAAAAGATTGGCAAGAAGCTTTAGACACGAATCAATCCTT
TTTATCCAAAATCGTGGAATATACTAAGGGTATGTTTGTCAATTCTAATC
TTGAAGGTAGTGATGATTCAAGTCCTATAACTTCGGATGATATTGATCGA
GTGCGAACCACTATTAAGCAGTGTGTTCGTGATTGGTCAATCGAAGGGGC
TGAAGAGCGTAACAACACTTATAAACTTATAACTGATGAATTGATTAGGT
TGTTTCCGGTTGTGGCAAATCGTAAACATATTGATATTTTAGTCCCTGGT
GCAGGTCTTGGCCGCCTTATGCATGATATTGCACGCCTTGGTTTCTGTTG
TCAAGGCAACGAATTTAGCTTGTACATGTTGTTTGCTTCTAATTATATTT
TGAACACGTGTGGCAGTCAGTCCATGGATACCATTCTTCCCTGGTTACAC
CAAACAGTGAACGTGGTTTCAAACGATGACCAAACACGTGGTGTAAGCAT
ACCTGACATTAACCCACAAGATTTGGACGGTAATTGTAATTTCTCGATGG
CGGCTGGTGATTTCTTAGAGGTTTACAGAGAGCCAAGTTGTTGGAATGTT
GTGGCCATGTCTTTTTTCTTGGACACTGCACACAATGTGATTGAGTACAT
CGAAAGAGCTCATTATATTTTGAAACCAGGTGGCTACCTCATACACTTAG
GACCTTTGTTGTATCATTTCGCTGGTATGGAGAAAGAACAATCAATTGAA
CTCACCTATGATGAAGTCAAACACGTCATGATCAATCATTTCAACTTCAA
GTTGATTAAAGAAGAATTGGGTGTCAAATCATCTTATATTCGTAATGTGC
GTTCCATGTTCACTGTTGTTTATAATTGTGCCTTCTTGGTTCTTCAAAAG
CCTGCAGAACCAATGTAGTAATGCCATCAGACACTGATCATATTAATTGA
CGGCATTTTTATGTCTTACAAACTACCTCAGATTTGGGTGATTCTTTTTT
TCTACTTGTTGTCGTCATAATAAGTCTTACGTTCTTAAAGTATCATATAT
TTATTTTTAAATAAATTTTTATTTTCCTAGGGGGCTAACGTACATCATAA
TACCTTTTTATTTCAATGTTTTCTTACTTTTTTTTTAGATGCAAAACTTT
TGAAAAAACTTGAATATTGTGAAACCAAGTTGGGACATGCTCAACCTTAT
TTCGCCAAAGATTTTCCTGCCCCCTGTTTTATTTGTTATCATCTAGAATT
CTGAAAAACACAAACATCCAATTTTCTTTATCTCTCATTTTATAATCAAC
ATTC Coding sequence (CDS) from alignment at scaffold_361:1145890..1147443- >TCONS_00062042 ID=TCONS_00062042|Name=TCONS_00062042|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_361:1145890..1147443- (Clytia hemisphaerica)
GTTAAGAAAAAAAAACAAAAAAACAATACTATTAAAAAAAATACAACTAA
AAGTTTACAAATGATGCCATCAACTAATGGGAAATCACAAGAAGAAGAAG
TCAGTGCAGAAGAACTTGAGCGTAAACACTTTCAACATGTCATCAACGTC
TTTATGGCGTACAAGAAATTCAGTGTGGTGCAAATTGAACGTAAACGAAA
GTGTTTATTGAATCTCCCCAAACACCATCAAGCCATGATTCCAACACAAT
TTGAAAGGATAAAAGATTGGCAAGAAGCTTTAGACACGAATCAATCCTTT
TTATCCAAAATCGTGGAATATACTAAGGGTATGTTTGTCAATTCTAATCT
TGAAGGTAGTGATGATTCAAGTCCTATAACTTCGGATGATATTGATCGAG
TGCGAACCACTATTAAGCAGTGTGTTCGTGATTGGTCAATCGAAGGGGCT
GAAGAGCGTAACAACACTTATAAACTTATAACTGATGAATTGATTAGGTT
GTTTCCGGTTGTGGCAAATCGTAAACATATTGATATTTTAGTCCCTGGTG
CAGGTCTTGGCCGCCTTATGCATGATATTGCACGCCTTGGTTTCTGTTGT
CAAGGCAACGAATTTAGCTTGTACATGTTGTTTGCTTCTAATTATATTTT
GAACACGTGTGGCAGTCAGTCCATGGATACCATTCTTCCCTGGTTACACC
AAACAGTGAACGTGGTTTCAAACGATGACCAAACACGTGGTGTAAGCATA
CCTGACATTAACCCACAAGATTTGGACGGTAATTGTAATTTCTCGATGGC
GGCTGGTGATTTCTTAGAGGTTTACAGAGAGCCAAGTTGTTGGAATGTTG
TGGCCATGTCTTTTTTCTTGGACACTGCACACAATGTGATTGAGTACATC
GAAAGAGCTCATTATATTTTGAAACCAGGTGGCTACCTCATACACTTAGG
ACCTTTGTTGTATCATTTCGCTGGTATGGAGAAAGAACAATCAATTGAAC
TCACCTATGATGAAGTCAAACACGTCATGATCAATCATTTCAACTTCAAG
TTGATTAAAGAAGAATTGGGTGTCAAATCATCTTATATTCGTAATGTGCG
TTCCATGTTCACTGTTGTTTATAATTGTGCCTTCTTGGTTCTTCAAAAGC
CTGCAGAACCAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062042-exon-scaffold_361-1575043694:1145890..1147443 | TCONS_00062042-exon-scaffold_361-1575043694:1145890..1147443 | Clytia hemisphaerica | exon |
| TCONS_00062042-exon-scaffold_361-1510915933:1145890..1147443 | TCONS_00062042-exon-scaffold_361-1510915933:1145890..1147443 | Clytia hemisphaerica | exon |
| TCONS_00062042-exon-scaffold_361-1491911889:1145890..1147443 | TCONS_00062042-exon-scaffold_361-1491911889:1145890..1147443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1145890..1147443 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062042 vs. Swiss-Prot (Human)
Match: CARME (Carnosine N-methyltransferase OS=Homo sapiens GN=CARNMT1 PE=1 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 1.008e-82 Identity = 142/345 (41.16%), Postives = 208/345 (60.29%), Query Frame = 2
Query: 128 HFQHVINVFMAYKKFSVVQIERKRKCLLNLPKHHQAMIPTQFERIKDWQEALDTNQSFLSKIVEYTKGMFVNSNL--EGXXXXXXXXXXXXXRVRTTIKQCVRDWSIEGAEERNNTYKLITDELIRLFPVVA-NRKHIDILVPGAGLGRLMHDIARLGFCCQGNEFSLYMLFASNYILNTCGSQSMDTILPWLHQTVNVVSNDDQTRGVSIPDINPQDLDGNCNFSMAAGDFLEVYREPSCWNVVAMSFFLDTAHNVIEYIERAHYILKPGGYLIHLGPLLYHFAGMEKEQSIELTYDEVKHVMINHFNFKLIKEELGVKSSYIRNVRSMFTVVYNCAFLVLQKP 1153
HF +IN F Y ++ R + +LP + Q ++P + ++ +D NQ L IV MF N +G+ P ++ D+D++++T+KQ VRDWS G ER+ Y+ I E+++ FP + ++ILVPGAGLGRL +IA LG+ CQGNE+S +MLF+SN++LN C + + PW+HQ N + DQ R + PD++P L NFSM AGDF E+Y E + W+ +A FF+DTAHNVI+YI+ ILKPGG I+LGPLLYHF + E SIEL+Y+++K+V++ + FK+ E+ V S+Y N SM Y C V++KP
Sbjct: 65 HFWKIINAFRYYGTSMHERVNRTERQFRSLPANQQKLLPQFLLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGEDGNGKIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNVIDYIDTIWKILKPGGIWINLGPLLYHFENLANELSIELSYEDIKNVVL-QYGFKVEVEKESVLSTYTVNDLSMMKYYYECVLFVVRKP 408
The following BLAST results are available for this feature:
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