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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062154 ID=TCONS_00062154|Name=TCONS_00062154|organism=Clytia hemisphaerica|type=transcript|length=2492bp
GATTACTTCATCAGGGTTAATATATGAGaTATAAAACTACGAgcaaaaaa
tgacaagaaaaatCATCAAAGCCGTCCGCAAATTCTTTTGCACAATCATT
ATTCTACTATTACAAATCCCCTCAACATCAGCCAATCAGATACCGATCAC
CATGCCAACCACACTCCAAACAACACCAATTGGTACCTAcattgaaaaca
caactcattCAAACAACACATACTCAAACATCAATATGGGTACACCACCA
TGTGAAACAGAGGCGTCTCTACAGAATAAAATCTTCACTGGTTTCTTAGT
CTTCGTCCTGGTCGTTGGCATCTGTGGCAATCTCCTGGCAATCCTGACTA
TCCTCTCATCGCGAAATCTTCAACGACAGGTCGCTTACAAATTCATCATC
TCCTTAGCGGTCGCCGATATCGGCGTCTCCTTTTTCTCGACCAGCTTTCG
ATTACAAAACAGTATCTACAATGGTAATTTCTGTAACTCGCTCAATGTCT
GTTACGTCATGACAATCGCCGATTTTGTGTTCCCGATGTCCTCCATCACC
CATCTTCTTATCATTGCAATCGATCGCTTTTGTGCCATCACGATGCCGTA
CAAATATTCAATCATGTTCACACATACTAAAGCAAAATTGTTTATTGCTT
TTACCTGGGTTTACGTGCTAGTGTGGTCAGGACTCGGCATGTTCTCATGG
GATTCGATTGATCGCGCAACTTTATTCATCGTATCAGGACAGGAAGGTCG
ATTTTGTTCATACGATAATTACAAATTTGTTACGACGATGGCCACTGTGA
TTTATTTCATCCCGATTGTGATCTCTACGGTCATGTATTCATGTGTTCTT
TGCGTCGCTTTGAAGCAAGCCGACTCCATAAACCGAATGAGACCATCAAA
CGGTGGAAACTCCGTACATAACAAGAAACTCGGCCGCCGGTTGAAACACG
ATCTCCGCGCGGCACGCACAATTTCAGTCGTTTTCGCCGCTTACACTATT
TGTTGGCTACCTCATTTTATTATCATCTTAATCGGCATCTGGGATTTACC
GACAATGATCAAATTGAAATTTGAGCACCCATTAGCATATGATTGTATCT
CAACGacttttaattatattttacCGACAATCAACTCGTGTATCAATCCA
TTTATCTATTTTCTATTCGGTGCTAACTTTCGAATGGCTTTCAAAGATGT
TTTGtataaattactcaaaaaacCGAGAAACGAGTTATTGTATCCCGACG
AATGTAATAATTCGGTATACACGACCAACGGTTATGAGATTCCTCGGAAA
GAAACCGATCCTTTAAACTCGGAAGTCCATCACAGTAATGGTTTGAATCA
ATTAAAAGGTGTAAACCTTTGAAATGAACCACAGCCACTTTGACTGCCTG
AAAACGCCGTGCGGCTCGGCAATTGTCCGTGTGGGATCGCCCCGCGCCGT
AGCTTTCACGGCCCGTTCCCCAGCAACCGGTGACGGTGAGatgattgaaa
cattttttcttgGAGCTTTAATTTGACTTGTTCGactagtctgaatcaca
gaccgCCCTACAAAATCATAAGTAGTATAGGGAGCACGAATCCAGTGGCT
TTCTACCCCTTccaaaaaataccaaaacctgtaaaaaaagtttttttgca
ggCGTTCTTCAGTAACGTAGACAAGGACTGATGGGCGTAAAATTTGTGTA
AGCAAGCAGActttttattatcttttttagATTATAAATAAGGTACcgtc
gtttttatcagtttcccatttccgcactaatattcctttgccactttact
agcggaaaaagaccaggacttcggcttgttgaaaaatgagcttcagaaag
ttaggcagtttcgtgactaaacacaagattttccgtaccaTTAGAGataa
accctttccaatctaaTGCCGGTTATCCCGGGGAAAATAGCGGAAATATT
CCTGAAAAGTGATAataatcttagtgcggaaatgggaaacttatatCAAA
CGACGGTAATTGATGTGTCGTAAAtttctgctctcctacacaaattttgc
gcccctcttatCTACGCTACTGTCCTTCTGGTTCTGATTTGTTTAGAGCT
AAATTGAAAAGATTCACATTTCAGCTAGTCCACGCAATAGACAGCTCAGT
AAGTGACTTCAAAACGAAGGAAGTTGGAATTTTAGCCTGGTTGAGAAATT
GCGGTCAATGAATTTTTCACTTCCAAGCATACGGTTTTTTCTAGTAGTAG
GCAAGTTCGATGTTTatgtttaataatttttttttgaaacattttcttaa
aaataattcATAAAAGCTAGCCTTTTTCGCTTCAAAATTCGGTGTCGGAT
AATTTTAAGGTATCTTCTAGAGTATTTTAACGTATTCCATTGTATTTTAT
GATCATATATATGTAAAGTGATATTGTGTAAAAAGAACGATCAATTAACC
TAAATGAGGCGCATTTTTGGAAATACAATCTTTGCAGAATTC Run BLAST on NCBI transcript from alignment at scaffold_362:71171..73954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062154 ID=TCONS_00062154|Name=TCONS_00062154|organism=Clytia hemisphaerica|type=transcript|length=2784bp|location=Sequence derived from alignment at scaffold_362:71171..73954+ (Clytia hemisphaerica)
GATTACTTCATCAGGGTTAATATATGAGGTGGGTTGACTTTCTTGATTAA
AAGTTTTTGCGCCTTTTTTCGGTCTGAGGTGAAAAAGTCATGGTTGCATC
CAGGCTATTTAACTATAGAGTCGTTTCAACCTTTTTCTCTTGTCGTAAGA
ATCCATATCGAAAGcttgaaacaaatttttggaattgttttcttttatta
ATAAGGAAGGGTGCATTTTTATCTTGGATGTTTGATAAACTATGCCCTGT
AAAATGAAGTCGTATAGGTTACGCTCAATACTGAATAGAAAACTCTAgac
attcttttctttttgttcagaTATAAAACTACGAgcaaaaaatgacaaga
aaaatCATCAAAGCCGTCCGCAAATTCTTTTGCACAATCATTATTCTACT
ATTACAAATCCCCTCAACATCAGCCAATCAGATACCGATCACCATGCCAA
CCACACTCCAAACAACACCAATTGGTACCTAcattgaaaacacaactcat
tCAAACAACACATACTCAAACATCAATATGGGTACACCACCATGTGAAAC
AGAGGCGTCTCTACAGAATAAAATCTTCACTGGTTTCTTAGTCTTCGTCC
TGGTCGTTGGCATCTGTGGCAATCTCCTGGCAATCCTGACTATCCTCTCA
TCGCGAAATCTTCAACGACAGGTCGCTTACAAATTCATCATCTCCTTAGC
GGTCGCCGATATCGGCGTCTCCTTTTTCTCGACCAGCTTTCGATTACAAA
ACAGTATCTACAATGGTAATTTCTGTAACTCGCTCAATGTCTGTTACGTC
ATGACAATCGCCGATTTTGTGTTCCCGATGTCCTCCATCACCCATCTTCT
TATCATTGCAATCGATCGCTTTTGTGCCATCACGATGCCGTACAAATATT
CAATCATGTTCACACATACTAAAGCAAAATTGTTTATTGCTTTTACCTGG
GTTTACGTGCTAGTGTGGTCAGGACTCGGCATGTTCTCATGGGATTCGAT
TGATCGCGCAACTTTATTCATCGTATCAGGACAGGAAGGTCGATTTTGTT
CATACGATAATTACAAATTTGTTACGACGATGGCCACTGTGATTTATTTC
ATCCCGATTGTGATCTCTACGGTCATGTATTCATGTGTTCTTTGCGTCGC
TTTGAAGCAAGCCGACTCCATAAACCGAATGAGACCATCAAACGGTGGAA
ACTCCGTACATAACAAGAAACTCGGCCGCCGGTTGAAACACGATCTCCGC
GCGGCACGCACAATTTCAGTCGTTTTCGCCGCTTACACTATTTGTTGGCT
ACCTCATTTTATTATCATCTTAATCGGCATCTGGGATTTACCGACAATGA
TCAAATTGAAATTTGAGCACCCATTAGCATATGATTGTATCTCAACGact
tttaattatattttacCGACAATCAACTCGTGTATCAATCCATTTATCTA
TTTTCTATTCGGTGCTAACTTTCGAATGGCTTTCAAAGATGTTTTGtata
aattactcaaaaaacCGAGAAACGAGTTATTGTATCCCGACGAATGTAAT
AATTCGGTATACACGACCAACGGTTATGAGATTCCTCGGAAAGAAACCGA
TCCTTTAAACTCGGAAGTCCATCACAGTAATGGTTTGAATCAATTAAAAG
GTGTAAACCTTTGAAATGAACCACAGCCACTTTGACTGCCTGAAAACGCC
GTGCGGCTCGGCAATTGTCCGTGTGGGATCGCCCCGCGCCGTAGCTTTCA
CGGCCCGTTCCCCAGCAACCGGTGACGGTGAGatgattgaaacatttttt
cttgGAGCTTTAATTTGACTTGTTCGactagtctgaatcacagaccgCCC
TACAAAATCATAAGTAGTATAGGGAGCACGAATCCAGTGGCTTTCTACCC
CTTccaaaaaataccaaaacctgtaaaaaaagtttttttgcaggCGTTCT
TCAGTAACGTAGACAAGGACTGATGGGCGTAAAATTTGTGTAAGCAAGCA
GActttttattatcttttttagATTATAAATAAGGTACcgtcgtttttat
cagtttcccatttccgcactaatattcctttgccactttactagcggaaa
aagaccaggacttcggcttgttgaaaaatgagcttcagaaagttaggcag
tttcgtgactaaacacaagattttccgtaccaTTAGAGataaaccctttc
caatctaaTGCCGGTTATCCCGGGGAAAATAGCGGAAATATTCCTGAAAA
GTGATAataatcttagtgcggaaatgggaaacttatatCAAACGACGGTA
ATTGATGTGTCGTAAAtttctgctctcctacacaaattttgcgcccctct
tatCTACGCTACTGTCCTTCTGGTTCTGATTTGTTTAGAGCTAAATTGAA
AAGATTCACATTTCAGCTAGTCCACGCAATAGACAGCTCAGTAAGTGACT
TCAAAACGAAGGAAGTTGGAATTTTAGCCTGGTTGAGAAATTGCGGTCAA
TGAATTTTTCACTTCCAAGCATACGGTTTTTTCTAGTAGTAGGCAAGTTC
GATGTTTatgtttaataatttttttttgaaacattttcttaaaaataatt
cATAAAAGCTAGCCTTTTTCGCTTCAAAATTCGGTGTCGGATAATTTTAA
GGTATCTTCTAGAGTATTTTAACGTATTCCATTGTATTTTATGATCATAT
ATATGTAAAGTGATATTGTGTAAAAAGAACGATCAATTAACCTAAATGAG
GCGCATTTTTGGAAATACAATCTTTGCAGAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062154-exon-scaffold_362-1491911889:71171..71198 | TCONS_00062154-exon-scaffold_362-1491911889:71171..71198 | Clytia hemisphaerica | exon |
| TCONS_00062154-exon-scaffold_362-1510915933:71171..71198 | TCONS_00062154-exon-scaffold_362-1510915933:71171..71198 | Clytia hemisphaerica | exon |
| TCONS_00062154-exon-scaffold_362-1575043694:71171..71198 | TCONS_00062154-exon-scaffold_362-1575043694:71171..71198 | Clytia hemisphaerica | exon |
| TCONS_00062154-exon-scaffold_362-1491911889:71491..73954 | TCONS_00062154-exon-scaffold_362-1491911889:71491..73954 | Clytia hemisphaerica | exon |
| TCONS_00062154-exon-scaffold_362-1510915933:71491..73954 | TCONS_00062154-exon-scaffold_362-1510915933:71491..73954 | Clytia hemisphaerica | exon |
| TCONS_00062154-exon-scaffold_362-1575043694:71491..73954 | TCONS_00062154-exon-scaffold_362-1575043694:71491..73954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:71171..73954 + |
Blast
BLAST of TCONS_00062154 vs. Swiss-Prot (Human)
Match: AA2BR (Adenosine receptor A2b OS=Homo sapiens GN=ADORA2B PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.376e-21 Identity = 83/333 (24.92%), Postives = 149/333 (44.74%), Query Frame = 2
Query: 272 QNKIFTXXXXXXXXXXICGNLLAILTILSSRNLQRQVAYKFIISLAVADIGVSFFSTSFRLQNSIYNGNFCNSLNVCYVMTIADFVFPMSSITHLLIIAIDRFCAITMPYKYSIMFTHTKAKLFIAFTWVYVLVWSGLGM---FSWDSIDRATLFIVSGQEGRF--------CSYDNYKFVTTMATVIYF-------IPIVISTVMYSCVLCVALKQADSINRMRPSNGGNSVHNKKLGRRLKHDLRAARTISVVFAAYTICWLPHFIIILIGIWDLPTMIKLKFEHPLAYDCISTTFNYILPTINSCINPFIYFLFGANFRMAFKDVLYKLL 1216
Q+ ++ + + + + GN+L + ++ LQ Y F++SLA AD+ V F+ F + S+ FC C + V SSI LL +A+DR+ AI +P +Y + T T+A+ IA WV G+G+ W+S D AT +G C ++N V M+ ++YF P++I V+Y + VA +Q M H++ L+ ++ AA++++++ + +CWLP + + ++ P K K + + +L NS +NP +Y +FR F ++ + L
Sbjct: 6 QDALYVALELVIAALSVAGNVLVCAAVGTANTLQTPTNY-FLVSLAAADVAVGLFAIPFAITISL---GFCTDFYGCLFLACFVLVLTQSSIFSLLAVAVDRYLAICVPLRYKSLVTGTRARGVIAVLWVLAF---GIGLTPFLGWNSKDSATNNCTEPWDGTTNESCCLVKCLFEN---VVPMSYMVYFNFFGCVLPPLLIMLVIYIKIFLVACRQLQRTELMD--------HSRT---TLQREIHAAKSLAMIVGIFALCWLPVHAVNCVTLFQ-PAQGKNKPKWAM-------NMAILLSHANSVVNPIVYAYRNRDFRYTFHKIISRYL 309
The following BLAST results are available for this feature:
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