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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062280 ID=TCONS_00062280|Name=TCONS_00062280|organism=Clytia hemisphaerica|type=transcript|length=3063bpRun BLAST on NCBI transcript from alignment at scaffold_362:905485..923332- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062280 ID=TCONS_00062280|Name=TCONS_00062280|organism=Clytia hemisphaerica|type=transcript|length=17848bp|location=Sequence derived from alignment at scaffold_362:905485..923332- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062280 vs. Swiss-Prot (Human)
Match: VAC14 (Protein VAC14 homolog OS=Homo sapiens GN=VAC14 PE=1 SV=1) HSP 1 Score: 659.833 bits (1701), Expect = 0.000e+0 Identity = 368/676 (54.44%), Postives = 474/676 (70.12%), Query Frame = 3
Query: 162 EKDYSPLSIQVVRGLNDKLYEKRKTAALEIERMVKEFQANNDVKQIRKLITILTDEFAVSHNPHSRKXXXXXXXXXXXXXXKDATFYLSSLVPPVLSCFSDQDSRVRYYGCEALYNIAKVARGSILPYFNEIFDGLSKLAADPDPNVKNGAELLDRLIKDVVTESSNFDLHSFVPILRERIYTTNPHAKQFIVSWLSALDAVPELDLLVYLPEFLDGLFNIFRDKSGEIRKMCEFILGEFLKDIKKNHSTVNFAAMVNNLVHHSQSEDEIIQFTAVTWLKEFVSLSGRTMLPFCALILSSILPCVSYDQPKQHIREVAKLVNNGLMKLITTEDDY----------------DVNEKETITKMAS--------------------------QIDLSRVVEVLTRQLSHKQIH--TRIAVLRWVLQLHMKTPNRLFQHIEQLFPALVKTXXXXXXXXXXXXXXXXADISASSAG---------PPRSQGSTLYEVTNTPSQKH-----------------TLNSYFTKFMNNLLKIFSTDKNLLEERGPFIIRHLCLLLNAQNIYCALAEILTQEKDDLKFASIMVNNLNMILLTSSELFELRLKLKDLNSEDSCHLFTILYRCWCHNPVATVSLCFLSQTYKHTCDLLLKFGNLEVNAEFLTQVDKLVQMIESPIFT 1979
EKD++PL+ +VR LNDKLYEKRK AALEIE++V+EF A N+ QI+ +I L+ EFA+S +PHSRKGGLIGLAA +IALGKD+ YL L+ PVL+CF+D DSR+RYY CEALYNI KVARG++LP+FN +FDGLSKLAADPDPNVK+G+ELLDRL+KD+VTES+ FDL SF+P+LRERIY+ N +A+QFI+SW+ L++VP+++LL YLPE LDGLF I D EIRKMCE +LGEFLK+IKKN S+V FA M N LV H Q+ D++IQ TA+ W++EF+ L+GR MLP+ + IL+++LPC++YD K+ I+EVA + N LMKL+T EDD D K+ T + L +V+VL LS I TRIAVL+W+ L++KTP ++F+H + LFP L++TLSD SDEV+L DLEVLA+I++S AG P Q S TP + T+NSYF KFM NLLK FS+++ LLE RGPFIIR LCLLLNA+NI+ ++A+IL +E +DLKFAS MV+ LN ILLTS+ELF+LR +LKDL + +S +LF LYR WCHNPV TVSLCFL+Q Y+H DL+ KFG+LEV +FL +VDKLVQ+IE PIFT
Sbjct: 4 EKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLLRERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVLGEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGILTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLRE-EDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFT 678 The following BLAST results are available for this feature:
BLAST of TCONS_00062280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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