TCONS_00062285 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062285
Unique Name	TCONS_00062285
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1035

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_362:929858..935403-

transcript sequence

>TCONS_00062285 ID=TCONS_00062285|Name=TCONS_00062285|organism=Clytia hemisphaerica|type=transcript|length=1035bp
ACAAAATATAGAAAAAGTACAAGATGTTGATGTTTGTGCATGAGCTGTCT
CACCGACCTATCAAAAATTCAGCAAGTAAAAGAGATTCTCTAACAGATGA
GCTCATTGAATTATATGACAAAGATTTCGAGATCAACTATGATGCAGAGA
CGGAAGAATTCGATATGGAGTGTAAAAAGTTCATGAATGAGTTTGTTGGT
CACATTTTCGAAGCAGATGGTTATTCGACACAAGAAGACAAAGCGAAGTT
TGGATTATTAGTCCAACACCAAGAAGGACGTTCATGGTTCGCTAAATTTG
TTGATGGTCAACGAGTCAAATCAAAAGAAGTAACCGAATTTGCATTTTAT
CGATTGGTGCAATATTTTGCTGTTTGCCTATTTGAATGTAATGTAGCAGA
TGACTTTGCACCAGCCACCACACTGATGAATATGTGTTTCACTTATAATT
TCACCTCCACAAACGCTATCGGACGTACTGCTGGCCAGAGTTCAAAACAA
TTTGTATACGAATATCTTAAAGATCAACCAATTTGGAAATCACTTCGTTT
CTGGGATTCAGCCTTTTTGATGGCAATTCACGCTGATCGAACTAAGAGAA
TTGGAGCCATGTCTGGTTGGAATACATGGGACCAACAACAGAAAGATGAC
TTTGAAATTGGTGAAGAAAATTCTGCTTTTGCACATCTAGCGTCATTTCT
TTACATGATGAATGCACTTGGCGTAGAGAAGAATGATCGAGAAATTTTTC
GCAACAAGATGAGCACCATAGGAAATCTAAGAGAAGagCAAATCAGAGAG
CTGGAAGAGAGTATCGAAATATTACAATGAAACATAAATCGAAATGGTTC
ATGATAATTGGTAACTATTTTTATGTAAATATGATAATATTTTGACAaag
ttctattttttataattatagggaaaagaaaaataaagaattatttattt
tgatatttgggTAAAAATTtgcagtttttattttttgtaggaATCACACT
AGAATAGGAAATTTTTCTTCGATGGTAGGtttatg

Run BLAST on NCBI

transcript from alignment at scaffold_362:929858..935403-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062285 ID=TCONS_00062285|Name=TCONS_00062285|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at scaffold_362:929858..935403- (Clytia hemisphaerica)
ACAAAATATAGAAAAAGTACAAGATGTTGATGTTTGTGCATGAGCTGTCT
CACCGACCTATCAAAAATTCAGCAAGTAAAAGAGATTCTCTAACAGATGA
GCTCATTGAATTATATGACAAAGGTAAAGCTCATAGTAACTAAGTAACCC
ATACCAAATATGATGTATCTATAGATTTTATGTTTTTTTTGTATGGATTT
TGATATTGCACTGTGTGAACAGTTTCGACTCCAAACAATCAAATAAACCA
AATATAGTATGGATCAAGATAATCGATTTCCCGATGTAATATTGTCTGAA
AAATCTCTCCTCTCAGTATGGTCATAGGTAGTTCTTAGATTTAAAACAGC
CAGAGCCATTTTGATTTTATGCCAACTACGTTTGTCGTGTGTTATCAAAA
GGTTATTTTTGGTTTCATTTTGAGCTTAAAGCTGGATACTTTTATCCTAA
ACTCATGATAAATTGGTAGTTTATGTATAAAATTTGAGGTTTATAATATC
CTGGGATATATTAAACAAGTACCTTTTTCTGATTCGATTATTGTAATGAC
TTTGTTATGTTTACAAAGCAGGAGATGAACAGCTGCAGATCACACTGCAC
AATATTTTTTTGCTACGTTTTGATTTTTTCTTTCTTTTACAGATTTCGAG
ATCAACTATGATGCAGAGACGGAAGAATTCGATATGGAGTGTAAAAAGTT
CATGAATGAGTTTGTTGGTCACATTTTCGAAGCAGAGTACGTTAAAGTTG
TCTTATTGAATCAATTATGACAGAGATATTACAGTTTGTTCCAAGCTCTA
CCTCCACTGTAAACTCAGAATATATTTTCCCGCGTTTACTATCTCTTTAA
CGGACGATGGAAGCGTTTATAGAATTCCATATTACCGAAGAAAAATTATT
CTCTATGAGGCTAGAAACTAGCTCTAAACTTAGTATCTCGCTAATAATTG
GTTAATCTTTTCAGTACTAAGAACTTCGTTGCTTTATCCCATACTGGTTT
ACTATCAATTTTACTCTACCCGGCCTATGTTTTTACCCTTTGCCCCCCAA
GCATCACTTTTTGAGAAAAAAAGTACTTTTTTAAAAACTAGACCAAATTA
ACTCAATTTTAGTTAAGTTCAATTAAGTATCGTCTAAATCTGTCATTCAT
CTTATGCAGCACTTATATTTTCACTTTTCAGTGGTTATTCGACACAAGAA
GACAAAGCGAAGTTTGGATTATTAGTCCAACACCAAGAAGGACGTTCATG
GTTCGCTAAATTTGTTGATGGTCAACGAGTCAAATCAAAAGAAGTAACCG
AATTTGCATTTTATCGATTGGTGCAATATTTTGCTGTTTGCCTATTTGAG
TAAGTTTATATAGGCTCTTATTGTCTTCTTCTTATAGTCGTTGTCAAAGC
AGAAGGACGAATCTTTCTATAAGATGAACCTTTGACAATGAAATTGGCCC
TTTCATCTTATAGAGATTAAATTTTTCCACATGACTCACGGCCGAATCTC
GTTTTCAAAGGTTTATGTTATAGAAAAATTCAAACTTTTCTAAGATACGT
ATTTTGAGATTTGCCGTTTTGCCTTGACAACGACGTTATCAGATTTTTTT
TTGAAGTTTTTAGTAACTTGGTATCATAATGGTAGCACTACTCGAAGTGG
GTTAAAAAGATACAATGTTGTTTCCCGTGACGTGATAAATACTGAGAAAC
AAAATACTACGCTACCTACAAATTATAGTAGTAGTACCTCAACAGCACAC
CGTCATAATTATTACTTTTAACATTTGACCGAAATTAAACCCCACAATCC
TTTTCATCTTGATTCGAATAAGTGTTATTGACTTGCAAAAGCAATTAATG
CAAAGGATGATGGAATTAAAACTCGGACAAACAGTAACTTTGATGTCTAT
TTTTAGAATCACTGTGGTATGTTATTAGGGCGCACAATTATTATAAAAAG
ACTTTTGCAGGCCAGGTTCGAGAAACTGCAGCTTTTATACAACACCGGGG
AAATATTTCATCGATCCTTTACTGATCATCTCTCTGTTCTTTCTTCAGAT
GTAATGTAGCAGATGACTTTGCACCAGCCACCACACTGATGAATATGTGT
TTCACTTATAATTTCACCTCCACAAACGCTATCGGTAAGAAAATTCTTAT
TCAAGTCCAGGTTTTTCACACCCTTTTTCTCACAGACCCGGTAGGATTCA
GCCAGTCGGGTTAAAAATAACGGCTTGAAACTCGATAGTGATTGTGATAT
TCTCATTTTTTTATGACTGGAATTTGAATTATATTGTTTTCAAGTCTGAA
AATTCAGTGGGAATGGAAAGAGTAGCACAATATTTTGCAGTTTTTATTTG
ACTATATTCATCGGGGACGAAAAATCGGAGTATAATTTTCTACTGGGAAT
TGATGGGAACGATATTTGGGCCAATCTTTCCAGTTGAAGGGGGTCCCGCA
AACTCTTTTTCCGTCAGCGGACGCAGACCTGATTTAGCGGTCGAAGACCT
GATTTCAGGGCCAAAGACCTGAATTAACGGTCACAACAAACAGAGCTGAT
GGCGTATACATAGTAACTAAACTTGAAAGAGTCCGTATAGGAGCGTGAAT
CCTCGTTTGGTTCAGGTTGTCAAAGGTGTTTTAACAATAAGTGCGTTATT
TATACCTCATACGTTAGGCTGTTACTCTAGCGAAGAGGATTCTTATAGGA
AGTATAGAGGTCTGCGAACCAAACTTCTCTATCTCTCTTCTTTTCATTAC
AGGACGTACTGCTGGCCAGAGTTCAAAACAATTTGTATACGAATATCTTA
AAGATCAACCAATTTGGTACTAAATTCTATTTTGACAAGCAGCATGTTTT
GTTTAAGCAGTTGGAAGTTCTTATTTGAAAACTTTGAAACTAGACCGCTG
GTTGAATGTACTTTAATTCTTTTGATGTTTTATGACTTGAAACTGCTCAG
GAAAAATTATCATTCTTAATTCAATTTTGTCGAGTAAGAAATCAACTAGA
AATGTATTCCTTAGGATGTGATATTTTTGTTAATTGAAAATTTCTATCTT
TGTTTTTCAAGGAAATCACTTCGTTTCTGGGATTCAGCCTTTTTGATGGC
AATTCACGCTGATCGAACTAAGAGAATTGGAGCCATGTCGTAAGTAGAGT
CTGTAGGCCGGTTGGAGGACGGCTTGGTATACAGGCCAATAACCTGTTAT
TGTTTTTTTGTTTTGATATATTTTTAGAGTTTGAGGGTGGAAGCAAAAGA
AGTAAAAGATTGTGACTTTCTTTGTTAGATTATTGTTTTTCAAGAGTTAG
CTGTCCTCTCTTGACGTACTGTTAAATTCAATAAAGTTTATAAAGTTTAT
TCTTTCAGCCAAATTTTCTTCTTTGATAAACACTTTAGATTGTTTTAGGC
ATTTACTGCTAAGGTGCCTTCAGCTTGGCCCATAAAGAATGTGAAATAGT
ATTGGTGTTATCAATTGTATGACTTTTGGGCAATTTGGGGGAAAAGCCTA
TTTAACATTGCAAAAAATACAGGCCGATTTCAAATGAACAGGCAATTAGT
GATTTAATTGGCTCGCTGAGATCGGAACTTTTACCCCAAGTAAAAATCAT
CGTGGTATGATTATCCCATAAATCGTTAACCCTTACACTTTTGACCTAAT
AAAATCTATCTGAAAAATTCTGCATCACTAAAAATAGACAAAAAGAACGA
CAAAAAAAAACGACAAATTTCATATTTTGCCGTCCACAACCCCGACCGAA
TTGCAAGACGAATCTACTGTTAATTATGTCATTTAACTCAAATATTATTT
ACTTTTCATTTTAAGTGGTTGGAATACATGGGACCAACAACAGAAAGATG
ACTTTGAAATTGGTGAAGAAAATTCTGCTTTTGCACATCTAGCGTGAGTT
CATGTAAAAATTTTTTTAATGATGTACCTTATATGATTAAATACCATTTA
TAGTTTTACTTAAACAATCGTGATAGGTTCTCTGAATGGGCTTTTCCAGA
AATAGTCCGTGGCACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCCCCCCCCCCCCTG
TTGAGGATATTGGATATCCAGGGGGTTAACGATTTTTGTTCACAAGTTCA
CAAGTTTACTAATAAAGTAGGATATCCTGGAGGTTCGATAATTCGAAAAA
TCAATATCCTCATACAGTGGGGTAAAACTTTTTTTCTGGAAAAGCCCAAT
ACACCTCTGTCTCTCTCAGTAACCCGGTGAAAATTTTAAAGAGGTTGATA
AGAATAAAATGAAGTAGCCTGCTAAATTTCATTGGAGATTCACAAAAACG
TTGTGAAATTAGAGTTCAATTGGGTTGAAATTTCGGGGTAGTTTTCTTAC
CAAAGACGATTTTTCACAGGGTAGCGGACCTAGCAGGTCTAGGGTATGCC
TCTTAACACTATATTGATCTAATCGTCTTTTGTCTCGATAGGTCATTTCT
TTACATGATGAATGCACTTGGCGTAGAGAAGAATGATCGAGAAATTTTTC
GCAACAAGATGAGCACCATAGGAAATCTAAGAGAAGGTAAGGGAAAATAT
TGAAATCAATTTTTTCGGTTGGGTTTGAGAAAATATGAAGTTGATGATTA
TATTCACGATATGAACCCCTGCTTCTTTCTGACAATACGTGATTTTATTT
TTTGCAAGGGCTGATTATTTGCAATAGTAAAAGTTACATATTTTCGTAGT
ACATATCATAAATTCATTACAGCTGAATTCCAGTTGACACAAACGTTGTT
TCAATATTCTTCTGATTCTTCTAATGCAATGATATATGAGCGCTACATTG
TCTCCGTTTAACTCGTTTGAATTTTTGACTTAGCTTGTAGATTACGATTG
TTCACCTCTGTCTCAGTGTCATAAAATAAAGAAACTACCTTTAACTGAAG
GAAATTTCAAAATGTTTTATTTATAGCACAACAATCTAGTGACGATTTTT
GAAATTTCTGTGTGTTTCCCAGAGGAAAACGGGAGCTTAGCGCTGTCCTC
CGAGGAATAGAATTTTTTTCTCACCAGGGAAGATTTTTGACAAATTTTTA
AGTTTAGAGGGGGGGATCTCACTAGGTCTGTTTAGTGATACAAGTAAGAG
TGTTCTTAAAAAGATGGATCTTATGAAAACTTTGTTTTGTTTTTCAGAGC
AAATCAGAGAGCTGGAAGAGAGTATCGAAATATTACAATGAAACATAAAT
CGAAATGGTTCATGATAATTGGTAACTATTTTTATGTAAATATGATAATA
TTTTGACAAAGTTCTATTTTTTATAATTATAGGGAAAAGAAAAATAAAGA
ATTATTTATTTTGATATTTGGGTAAAAATTTGCAGTTTTTATTTTTTGTA
GGAATCACACTAGAATAGGAAATTTTTCTTCGATGGTAGGTTTATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039030	XLOC_039030	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_362	supercontig	scaffold_362:929858..935403 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656721	2.81849	1.68746	0.770053	37.3906	19.2481	44.8805	45.1654	8.47848	14.2015	6.26659	1.01903	4.61402	5.1588	3.30781	3.94768	7.13251	6.46001	1.24725	0.597144	7.23235	8.817	0	4.12357	18.0241	19.9944	2.04207	2.53439	0	0

Blast

[Close]

BLAST of TCONS_00062285 vs. Swiss-Prot (Human)
Match: K0513 (Uncharacterized protein KIAA0513 OS=Homo sapiens GN=KIAA0513 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.009e-22
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3

Query:  174 KKFMNEFVGHIFEADGYSTQEDKAKFG--LLVQHQEGRSWFAKFVDGQRVKSKEVTEFAFYRLVQYFAVCLFECNVADDFAPATTLMNMCFTY 446
            + FM  +V  IF       QE+KAKFG     ++ +GR WFA++V  QR  SK V+E  FYRLVQ FAV LFEC+  DDF PA  LM MCFTY
Sbjct:   96 RDFMRGYVEKIFSGGEDLDQEEKAKFGEYCSSENGKGREWFARYVSAQRCNSKCVSEATFYRLVQSFAVVLFECHQMDDFGPAKNLMTMCFTY 188

The following BLAST results are available for this feature:

BLAST of TCONS_00062285 vs. Swiss-Prot (Human)

BLAST of TCONS_00062285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
K0513	1.009e-22	52.69	Uncharacterized protein KIAA0513 OS=Homo sapiens G...	[more]

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TCONS_00062285 (transcript) - C. hemisphaerica