TCONS_00062288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062288
Unique NameTCONS_00062288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062288 ID=TCONS_00062288|Name=TCONS_00062288|organism=Clytia hemisphaerica|type=transcript|length=658bp
cgaagaagaggaagaagaagaaggcgTGGAAGAAGGTGACGAAGAAGTTG
CAGAGGGAGGAGATGCAGAAGTCGAGGATGAAGATTCCAACGAGGCTGTC
CAAGAAGACGAAGGTGAAGAAAATGAAGATGTTGAAGATCAAGAGGATCA
AGAGGATGGCGAAGAAGACGAGCAAGTTGTCGTCAACGTTGATGATGACG
AAGATGGTGATCAACAAAACCAAAATGTCGGtgtTTACGAGGGTAGCTTA
GACAATGTAGATTCTGGCATCCAGTTAGATTCCGCCTCGCGAACAGAACA
AGAAGATGCACAAGCTTCAGAACAAGGAGGCGAAAGATCGAAACCTGTAC
GCTTACAACGTTCCGCCCAAGgCGTTCGACCACGTATTCGCCGCGATGTT
CTTAAAGGTCGCTCAGCAAAACCAGAAGGCTCTTCATAATTCGGTTGATA
CATAAAGATAACGTGATACGATTTTACAAAAGGCTTCACCATGCTAGAAT
ACATTTTCTTTACTGactaaaacatttttatcataaattttaattctttc
aaaatataaaaaccatgtaaaatttttagggatttttttttcaagtaacc
ATTTCTTTGGTTGAAAGATCTTTTTTATATTAAAGCGTTTTAAATGAATT
GTTTCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_362:945606..949350-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062288 ID=TCONS_00062288|Name=TCONS_00062288|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at scaffold_362:945606..949350- (Clytia hemisphaerica)
CGAAGAAGAGGAAGAAGAAGAAGGCGTGGAAGAAGGTAAGACAGTCAAAG
AAATCCCTCAATTATTGCGGTAGTAACTCTTTACTGCAATTGCGGTATAA
ACATCGCTTTTACATTTTTCATATACCGCAAATGCAGTATATACAAGAAA
AGATTCAAGGAGAAAATTTTTGTACATGATTGATTCCCTGGCTGTAAGAT
GTATTTTTGTTCTGTCAACAGGGTGTTTTGCTTCTTTGAGGGATTTTACA
AAAAAAATCAATAAAATAATCATAATAATTTTTAGTCTGTGACAGGACAA
TTGCCCCGCCCCCTCCACTACAAAATAGACCGAGGATGGTTATCCTAAAA
TCCTGCAGTCTAACCAAAATCCCTAATGGGCTTGTATGAGACTTTCATAA
GTGAAGATTCTGTCAGTAAGTAAGTTCCGAATTGGCTGAATATGGAGTCT
ACATAACTTTAACACGCATGGGGAACAGATTTTGTCGAGTTATGCGAGTG
AGGTTTATAAGGCATTGTTACTGAAGGGCCATGAAATTTGTTCGAGTTAT
AGAGGGTTGAGTTAAAGATACCCCGCTTTTCTTTCTTAGAAGGTGACGAA
GAAGTTGCAGAGGGAGGAGATGCAGAAGTCGAGGATGAAGATTCCAACGA
GGCTGTCCAAGAAGACGAAGGTGAAGAAAATGAAGGTACTACTCATTCAT
CACCTTTATCTCGTAGCCATTCAATGGCTACGCTAAAATCTTGACACATT
TATGGATCCTGAGAAAATTTAAATCAATCCCTAACGGCGAATCGATTTCA
ATTTTCCCAGGATCAAATGAATATATCAAGATCTTAGCGTAGCCATTGAA
TATGCTAGGAAAATGAAATGTAGAGACCAACGAATCGTATTTTCTTGTGT
CTATGGGTCGACGCTCTCTGGGCCAAAGTACTCTTACGCTTGATTTGGTA
AGAATCACCTACCTACAAACATAAAGCAAAACCCTGTTAAAGTGGTGATT
CTCTCGTAATACAACCAGGTTGAGCTTGCTCGGCTTGCGATAACACGTTC
TCTCCACTGTTGCCGATGTCCCATGACATTTAGAAGGTCTTCCTCTGAGC
AGTCTGCATCATCTTTCAGTTGGTCGATGTAGGTTTTGCTTGGTCTACCC
CTTGTAATAAAGCTCTTGTAATAAAGAATCACTTGCCTGAGATTCTCAAT
GATAAATCAATTCGATCAACCAGTCGTTCATGAGTGTGATTTCGAACCAT
TTTAACAGAACTCAGAGTGATGTATTTTTTTAAGTTTTTAATGGAAGATA
ACTTTTAGAATATTATTATATGGCTCTGGTTCTTAACTAATCGAGCACTC
TTACATGGTATTGATTTACCACACTTGTTTTACCATTTTAACAGATGTTG
ATAAAAAAGCTCTTGTAATAAAGAATCACTTGTCTGAGATTCTTAATGAT
AAATCAATTCAATCAACCAGTCGTTCATGAGTGTGATTTCGTACCATTTT
AAGAGAACTCAGAGTGATGTTTTTTTTAGTTTTTAATGGAAGATAACTTT
TAGAATGTTATTATATGGCTCTGGTTCTTAACTAATCGAGCACTTTTACA
TGGCATTGATTTACCACACTTGTTTTACCCTTTTAACAGATGTTGAAGAT
CAAGAGGATCAAGAGGATGGCGAAGAAGACGAGCAAGTTGTCGTCAACGT
TGATGATGACGAAGATGGTGATCAACAAAACCAAAATGTCGGGTAAGTAA
GTGCCGAAGAAAGGGAAACATCTTTTAAAATAATTATCGTGATTTTTCGT
GTGAATTTACGGTGGAAAAACTATAATCTCTATTGATAGAACTTCAGTGT
TTTCACCGTGAATCATTGAAAACTGTCCTGTATGTAGTTGTCGAGTATGA
TAATATAACCGAATAAACCGTAAAAGTGTAATAATTTAGTTGAAGCTTTT
CCTGGCTTATTCAAACAATCATTATGAATTAAAAACCAAAAATTTTAGGC
AGATGTGAACTGACCTTAGCTAACAACACATTTGCGTCAACTTTTTACTG
ACCAATACTATTTTTTTATTTTTCAGTGTTTACGAGGGTAGCTTAGACAA
TGTAGATTCTGGCATCCAGTTAGATTCCGCCTCGCGAACAGAACAAGAAG
ATGCACAAGCTTCAGGTAAGATAGCTATTTTCGAAATATTCTATTTGTTC
GCCGAGGATTTAACTTGATGATTTTAAATAATGGAAATATTTCAATTGGT
TTAGCTGGGTGTTTGGAAAATGGATTCATATTGGGCTCTCGCAGAAAGAA
AAATTATATGGGGTGGGGGGGTTATAATTACAACTAGTTTGAACCCCTTG
GACGATTGATTGCTTCCCCTTGCATGTGTAAATTTATCTTCAGGACATGG
TAATTAATGACTTTTTTTGCCATTTCTTTATTTAAAAAGAAAGTCGCGCA
ATATAATGACTGTATGTCTGCCTCAAAAACTCGTTTTGGCAAATGATCAT
GAGAGTGAGAAAGCGACAAATGGCATTTCTTGATCTTATGTTTAGCGTCT
TGTCTAATCGACTTTTTCAATCATTTATCAGAACAAGGAGGCGAAAGATC
GAAACCTGTACGCTTACAACGTTCCGCCCAAGGTTTGTGAAAAACAATGT
TTACTTCTTCAATACTTTATGTTGCTAGGCCAAAAACAAATAAGCAGTAA
TGATTGCGACTTTTTCCGTGTGTAGCCGAATATTAANTAAAAACGAATAA
GCAGTAATGATTGCGACTTTTTCCGTGTGTAGCCGAATATTAACCTAGTT
GAGATACAAATATATGATTTCAGACTTGCAGTAAGAGGGGTTTTAGACCA
AACATAACAAAGATTTATCGTAGTTTCCATTCAGATATGATTGATTTTAA
AAAGGGTTATCAAAATTTTGTGTGAAGGGGAAAATAAATCGTTTACCAAA
TGTTAGTTTGCCATTTTCTTCCTTTATCAGTTTGCTCGTATTACCGTTTT
ATGGGCATGTTTTGGGCTTTTTACGATTTCACAATTTTGTTTTGTTTCTT
TAGGCGTTCGACCACGTATTCGCCGCGATGTTCTTAAAGGTAAGACCTCT
TGTTCTTTTTACGTTTTACTACGAAATAGAAAAGACAGGATTGCAATGAA
ATGACATGAAATAGTCAAGGTATTTTTTAAGACATACCTTTGCATCCTCT
CTGATATGTTTTGAAGGGAATGCGTATCATGTATAAAATTGCCGTCGGAG
AGTTACCCCAAATTTCGGTTAACCTGTTCAATTTTTTTCAAAGGCTCTGA
AATTTAATGATTGTATTGATTCAAATTTTCAAATCAAATTTAATGAAATT
TAAAGATATCTCATAAAAAACCTACTAATCAAGCTTGTCAAGTTTCCAAA
ACTCAAAGACGGGGGTAACTCCCAATGTCGATGGCCGTAGAAGATTTAAT
TTTGACATTTTAGTTTTACATTGTTATTCTTTGTTTTTCGACAGGTCGCT
CAGCAAAACCAGAAGGCTCTTCATAATTCGGTTGATACATAAAGATAACG
TGATACGATTTTACAAAAGGCTTCACCATGCTAGAATACATTTTCTTTAC
TGACTAAAACATTTTTATCATAAATTTTAATTCTTTCAAAATATAAAAAC
CATGTAAAATTTTTAGGGATTTTTTTTTCAAGTAACCATTTCTTTGGTTG
AAAGATCTTTTTTATATTAAAGCGTTTTAAATGAATTGTTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039031XLOC_039031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062288-exon-scaffold_362-1575043694:949316..949350TCONS_00062288-exon-scaffold_362-1575043694:949316..949350Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:948666..948758TCONS_00062288-exon-scaffold_362-1575043694:948666..948758Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:947609..947711TCONS_00062288-exon-scaffold_362-1575043694:947609..947711Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:947186..947274TCONS_00062288-exon-scaffold_362-1575043694:947186..947274Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:946719..946769TCONS_00062288-exon-scaffold_362-1575043694:946719..946769Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:946262..946297TCONS_00062288-exon-scaffold_362-1575043694:946262..946297Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1575043694:945606..945856TCONS_00062288-exon-scaffold_362-1575043694:945606..945856Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:949316..949350TCONS_00062288-exon-scaffold_362-1510915933:949316..949350Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:948666..948758TCONS_00062288-exon-scaffold_362-1510915933:948666..948758Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:947609..947711TCONS_00062288-exon-scaffold_362-1510915933:947609..947711Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:947186..947274TCONS_00062288-exon-scaffold_362-1510915933:947186..947274Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:946719..946769TCONS_00062288-exon-scaffold_362-1510915933:946719..946769Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:946262..946297TCONS_00062288-exon-scaffold_362-1510915933:946262..946297Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1510915933:945606..945856TCONS_00062288-exon-scaffold_362-1510915933:945606..945856Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:949316..949350TCONS_00062288-exon-scaffold_362-1491911889:949316..949350Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:948666..948758TCONS_00062288-exon-scaffold_362-1491911889:948666..948758Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:947609..947711TCONS_00062288-exon-scaffold_362-1491911889:947609..947711Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:947186..947274TCONS_00062288-exon-scaffold_362-1491911889:947186..947274Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:946719..946769TCONS_00062288-exon-scaffold_362-1491911889:946719..946769Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:946262..946297TCONS_00062288-exon-scaffold_362-1491911889:946262..946297Clytia hemisphaericaexon
TCONS_00062288-exon-scaffold_362-1491911889:945606..945856TCONS_00062288-exon-scaffold_362-1491911889:945606..945856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:945606..949350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.9623	8.76525	11.8706	19.4592	0	1.51822	3.1929	0.0493996	6.26146	5.26111	3.16507	6.73059	4.57977	5.11356	1.806	3.68711	0.00497038	3.92844	1.37907	1.9478	0.837256	0	3.94557	1.1454	13.9487	8.00906	0.044281	4.71172	0.395671	3.77181e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top