TCONS_00062293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062293
Unique NameTCONS_00062293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062293 ID=TCONS_00062293|Name=TCONS_00062293|organism=Clytia hemisphaerica|type=transcript|length=447bp
TggaaattggctgaaaaaaaacCGCATCAAAACATCAATCATACGCATAA
CCCAGTCACTTTCATTTCGTTTTAAGGTCAAAAGAGGCAAGTTTGGTCCT
TCCCAGGATTCATCCGCGTCAATGTtgttgtcaccagagtgctcaaaaGA
CGACGCTTGTGGTGAGCAGAGAACCATATCATATATTGGGTATGTGGATT
TCATATTGGTTTCAATGGATAGTTTGATGGATATTTACGtcgcaaaaaaa
taattttcttttgctGAAATACACACCTATTGAATGTGAGACCTTGGTTG
CAATTTAGATGACAAGAAACGAGAAGAGAATTGTgacgatttttttaaat
ttaacttAAGGGCTTTGgacatttttcgattttacaccaacttaaatgaa
aatttctgcatttcaaaaagattaatgtataaatttttttatatggc
Run BLAST on NCBI

transcript from alignment at scaffold_362:1006134..1008409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062293 ID=TCONS_00062293|Name=TCONS_00062293|organism=Clytia hemisphaerica|type=transcript|length=2276bp|location=Sequence derived from alignment at scaffold_362:1006134..1008409- (Clytia hemisphaerica)
TGGAAATTGGCTGAAAAAAAACCGCATCAAAACATCAATCATACGCATAA
CCCAGTCACTTTCATTTCGTTTTAAGGTCAAAAGGTAAAATGTTTTAAAT
GTTTTGGCTGAATAACCAGATCAGATCATCGTATTTTACTATATCTATTT
AAAGTAGAGCGTGGTGTGGGCAGAACATGGATGATCTAATATGTATCGAC
GATATGATAGGGAAAGAAAGGTCTTGGAATAATACACCTTTTCGACCGTA
GTCGCGTGGTCAGGCGCGTGCCACTTTATTATTTAATCATCCCTCTAAAC
TCGATCCAATTCTTTTTCTATAAGGTTAAAAAAAAGACTGGGACGGTTTT
AGGGTGGTAAAACGGACAAAAAAATGCTCGCGTGGCAATTGGCGGCTACG
GTTGATCACGAAATTTTGGTAGGACCGATTCAAATGATATTACCAACGCA
TATAAATGTTTTACATAAGAAAATCAAGAAAAAAAATCGAGAACTACTGA
GTGGGAGGATTAAAAGGATTTAGAAATTGAATAAAATGAAAGTTACCAGG
AATTCTATATAATCTTCAGAACGCATTTTCTTTCATCTGATACAAGGCTG
GTTTTTGTTGCAAGATAATAACGACTGTAATGCACTTGACGAAGGGTTAA
CTTGTTATGGCCAAATTTCTGAAATATAACAAGAATCAATTAATTAATAT
ATTCCTTCGCTATGTAAAAGTAATGAGTTCTGATAAATTTGGAAGAGTAA
ATAAACAAGATGAATAGTGCAACACGAATAGTGAGTTTTCCTTGTATTCC
CCTTGGATCTGATAGATCCGTAAAGAGTCAGAGTGATATTTCTTGAGGTA
TTTAGACCCGGGATGTAGGAAAGTAGGGTATGTGGCTACTTATCGAAATT
GAGCTTACATGTTTTTTTTATAAGCAAGTGTATGCCCCTTGGTCAGGCTT
GTGTATGCTTAAGTTCTCAATGCATCCAGGCATAGTTTATGCTTATTATA
GCCCCATTATATGCTTAAGAACCATGCTTATGATTCACCCCGAGCCAAGT
TTTTAATTGAATTTTAGAAATTTTGTAAAAATTTGTTCAGACTTTGGGAG
CAGTGGAATGTTAGCGAGCCGTGGAATGTCTTATTTTTTACTTGACCTCT
ACCAAACCTTTTTAAACAGATAAAAATGACCTCTTGAAAAATATTTTAGG
CTGACATATATGCTCATGTTATGCATAGGAATTTTGCAAATCTGAGCCTT
CGTATGCTTATAAGCGTTATGCTTATAAAAAAAACATGTACTTCCGGTTC
TTTGCATCAGTCTCAAAAACATTCCTTTCAAGCATCCATGTACCTCCGAA
TCTATCTTGTTTCAATCTCTTCAAATACATGATACAAAGATATACAATTT
TTCTTCCCTATCGTCTCTTTACTGTTTCTCAGCTTTCTACAAAACAAGAA
AATAAATTTTTATTTAGAGATATCTTTTCTTGCGTCATGGTAGAGGGTAG
TTGAATAAGATTAGAAAAGGCACATACTCGCACTTATAAAAATTCCAAAT
GTTTGATGAATTTTGAAATTCTTTCTAGTTCTGGTCAATTTTTAGTGAAG
TAATTTTTCATGAAAATATATCTTTAAAAGGTTGAAATTTATTCATTTGT
CTTAAAAATGCGGAGAAAGCAACGCAGACCTCTGAAAAGCCGCTGGTAAT
TTAAAGATTTCGATACAAGGGCGATAGTGATTGTACAATACAGTCTCTGA
AAAAGTCTAAAAAATTACCTAACAAACTCAAGTTGCTAATGGCAGGTTTC
AAGTAAATTTCAAATGATTTGGGACAGCCTACTAAAAGAACGTGCCTTCA
GAATTTATCAAATATTATATTCGATATTATCGGGTATTATCTTATTATAT
TATCTATCCTCAGAGGCAAGTTTGGTCCTTCCCAGGATTCATCCGCGTCA
ATGTTGTTGTCACCAGAGTGCTCAAAAGACGACGCTTGTGGTGAGCAGAG
AACCATATCATATATTGGGTATGTGGATTTCATATTGGTTTCAATGGATA
GTTTGATGGATATTTACGTCGCAAAAAAATAATTTTCTTTTGCTGAAATA
CACACCTATTGAATGTGAGACCTTGGTTGCAATTTAGATGACAAGAAACG
AGAAGAGAATTGTGACGATTTTTTTAAATTTAACTTAAGGGCTTTGGACA
TTTTTCGATTTTACACCAACTTAAATGAAAATTTCTGCATTTCAAAAAGA
TTAATGTATAAATTTTTTTATATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039032XLOC_039032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062293-exon-scaffold_362-1575043694:1008326..1008409TCONS_00062293-exon-scaffold_362-1575043694:1008326..1008409Clytia hemisphaericaexon
TCONS_00062293-exon-scaffold_362-1575043694:1006134..1006496TCONS_00062293-exon-scaffold_362-1575043694:1006134..1006496Clytia hemisphaericaexon
TCONS_00062293-exon-scaffold_362-1510915933:1008326..1008409TCONS_00062293-exon-scaffold_362-1510915933:1008326..1008409Clytia hemisphaericaexon
TCONS_00062293-exon-scaffold_362-1510915933:1006134..1006496TCONS_00062293-exon-scaffold_362-1510915933:1006134..1006496Clytia hemisphaericaexon
TCONS_00062293-exon-scaffold_362-1491911889:1008326..1008409TCONS_00062293-exon-scaffold_362-1491911889:1008326..1008409Clytia hemisphaericaexon
TCONS_00062293-exon-scaffold_362-1491911889:1006134..1006496TCONS_00062293-exon-scaffold_362-1491911889:1006134..1006496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:1006134..1008409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53412	1.45363	2.70049	3.3025	1.20614	1.42967	0.574944	1.43535	0.502461	0.311189	0.151024	0.397109	0.396557	0.514785	0.169289	0.0908367	0.111903	0.688184	0.158461	0.497453	0.288251	0	1.88008	1.08771	0.480137	0.285674	0.408799	0.21814	0.827259	0.842846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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