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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062294 ID=TCONS_00062294|Name=TCONS_00062294|organism=Clytia hemisphaerica|type=transcript|length=1068bp
CCATCAATGGGTGCAGGTAGAATCTCTTTGGAAGTTGATTgtgatttcat
tgaattagAAGGTGTTTTAGTAGGAAAGAAATATGGTTGAGACTGTCTCA
AAATGCCAGCAGGTTCATCGAGTTCAGATACATAACCAAGGTTTGTAAAG
CCATGTTTTTCATCGCCAATATTAGAAGTAAAGTTCGGCCTTTCTATGGT
AATACCATCAGTGTTTTCAATATCAGATGTATTTAAGTCATAGTGTCCAG
AACCAAATTTCCTCCCAGCCGTTGCTGGTGATTCAATCTCAGCATCATTA
TAGCTGTTATTAAATCTGAACGTCGTATCGTTTGACCAGAAATCATCTTT
CATGGGAGATTCTtgaaaagttgttaaaaaatCATCAGCGACTTCCgaat
gaacttcatttttggtattgTAATCATAATCCTTCGGAGTAATAAAAAAG
TCACTTTCCTTTGTCAGAGATTGGTCAGGCagttcaaaatttctttggcg
GTCAATTGGGCTGTTTTTACAACCACCAACATTTTCAATTTCCGTTGTTT
CGTCTGTATTTCGAAGATCAGACGCCTTATGGTCGACTTCACCAGCAATA
TCATTACCATGGTTACTAACTGCATCACCAGCAATATCACCATGGTTACT
AACAATGCATTTTCCTGGATCGTTTACCTTATCTTGAACTACTGAAACAt
tgaaatcttcaattttaCTATCGAGTGTATCTGGATCTATCACTTTAGCT
GATTCCGCTGTTTTCCCAATTTGGTTCGAGGAGTCATCACCATCAATGAG
TCTATTTGCAGATCCTTTTGAACTGTTTTCTAAATATCCACCATCTTCAA
GTGAACTGCCAGAGATAACAGCTTGATCAAGAGTTGGGTTAGTAAGATCA
GCGATGGTTCCGCTACATTGTACGTCTTCTAGTAATCCATCAAACTCAAC
CGTCTCGTCGTTAGATTCATTCAAACGATCTTGATTACCACTGGAAAATG
TAACTTTGGGATTGTCAAAGGGTTTCATTTCATTAGTCTTAATTAAGTAT
CCTTTTTGTAAAATTGGT Run BLAST on NCBI protein sequence of TCONS_00062294-protein >TCONS_00062294-protein ID=TCONS_00062294-protein|Name=TCONS_00062294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
PILQKGYLIKTNEMKPFDNPKVTFSSGNQDRLNESNDETVEFDGLLEDVQ
CSGTIADLTNPTLDQAVISGSSLEDGGYLENSSKGSANRLIDGDDSSNQI
GKTAESAKVIDPDTLDSKIEDFNVSVVQDKVNDPGKCIVSNHGDIAGDAV
SNHGNDIAGEVDHKASDLRNTDETTEIENVGGCKNSPIDRQRNFELPDQS
LTKESDFFITPKDYDYNTKNEVHSEVADDFLTTFQESPMKDDFWSNDTTF
RFNNSYNDAEIESPATAGRKFGSGHYDLNTSDIENTDGITIERPNFTSNI
GDEKHGFTNLGYVSELDEPAGILRQSQPYFFPTKTPSNSMKSQSTSKEIL
PAPID Run BLAST on NCBI transcript from alignment at scaffold_362:12993..14060 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062294 ID=TCONS_00062294|Name=TCONS_00062294|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_362:12993..14060 (Clytia hemisphaerica)
ACCAATTTTACAAAAAGGATACTTAATTAAGACTAATGAAATGAAACCCT
TTGACAATCCCAAAGTTACATTTTCCAGTGGTAATCAAGATCGTTTGAAT
GAATCTAACGACGAGACGGTTGAGTTTGATGGATTACTAGAAGACGTACA
ATGTAGCGGAACCATCGCTGATCTTACTAACCCAACTCTTGATCAAGCTG
TTATCTCTGGCAGTTCACTTGAAGATGGTGGATATTTAGAAAACAGTTCA
AAAGGATCTGCAAATAGACTCATTGATGGTGATGACTCCTCGAACCAAAT
TGGGAAAACAGCGGAATCAGCTAAAGTGATAGATCCAGATACACTCGATA
GtaaaattgaagatttcaaTGTTTCAGTAGTTCAAGATAAGGTAAACGAT
CCAGGAAAATGCATTGTTAGTAACCATGGTGATATTGCTGGTGATGCAGT
TAGTAACCATGGTAATGATATTGCTGGTGAAGTCGACCATAAGGCGTCTG
ATCTTCGAAATACAGACGAAACAACGGAAATTGAAAATGTTGGTGGTTGT
AAAAACAGCCCAATTGACcgccaaagaaattttgaactGCCTGACCAATC
TCTGACAAAGGAAAGTGACTTTTTTATTACTCCGAAGGATTATGATTAca
ataccaaaaatgaagttcattcGGAAGTCGCTGATGattttttaacaact
tttcaAGAATCTCCCATGAAAGATGATTTCTGGTCAAACGATACGACGTT
CAGATTTAATAACAGCTATAATGATGCTGAGATTGAATCACCAGCAACGG
CTGGGAGGAAATTTGGTTCTGGACACTATGACTTAAATACATCTGATATT
GAAAACACTGATGGTATTACCATAGAAAGGCCGAACTTTACTTCTAATAT
TGGCGATGAAAAACATGGCTTTACAAACCTTGGTTATGTATCTGAACTCG
ATGAACCTGCTGGCATTTTGAGACAGTCTCAACCATATTTCTTTCCTACT
AAAACACCTTctaattcaatgaaatcacAATCAACTTCCAAAGAGATTCT
ACCTGCACCCATTGATGG Coding sequence (CDS) from alignment at scaffold_362:12993..14060 >TCONS_00062294 ID=TCONS_00062294|Name=TCONS_00062294|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_362:12993..14060 (Clytia hemisphaerica)
CCAATTTTACAAAAAGGATACTTAATTAAGACTAATGAAATGAAACCCTT
TGACAATCCCAAAGTTACATTTTCCAGTGGTAATCAAGATCGTTTGAATG
AATCTAACGACGAGACGGTTGAGTTTGATGGATTACTAGAAGACGTACAA
TGTAGCGGAACCATCGCTGATCTTACTAACCCAACTCTTGATCAAGCTGT
TATCTCTGGCAGTTCACTTGAAGATGGTGGATATTTAGAAAACAGTTCAA
AAGGATCTGCAAATAGACTCATTGATGGTGATGACTCCTCGAACCAAATT
GGGAAAACAGCGGAATCAGCTAAAGTGATAGATCCAGATACACTCGATAG
taaaattgaagatttcaaTGTTTCAGTAGTTCAAGATAAGGTAAACGATC
CAGGAAAATGCATTGTTAGTAACCATGGTGATATTGCTGGTGATGCAGTT
AGTAACCATGGTAATGATATTGCTGGTGAAGTCGACCATAAGGCGTCTGA
TCTTCGAAATACAGACGAAACAACGGAAATTGAAAATGTTGGTGGTTGTA
AAAACAGCCCAATTGACcgccaaagaaattttgaactGCCTGACCAATCT
CTGACAAAGGAAAGTGACTTTTTTATTACTCCGAAGGATTATGATTAcaa
taccaaaaatgaagttcattcGGAAGTCGCTGATGattttttaacaactt
ttcaAGAATCTCCCATGAAAGATGATTTCTGGTCAAACGATACGACGTTC
AGATTTAATAACAGCTATAATGATGCTGAGATTGAATCACCAGCAACGGC
TGGGAGGAAATTTGGTTCTGGACACTATGACTTAAATACATCTGATATTG
AAAACACTGATGGTATTACCATAGAAAGGCCGAACTTTACTTCTAATATT
GGCGATGAAAAACATGGCTTTACAAACCTTGGTTATGTATCTGAACTCGA
TGAACCTGCTGGCATTTTGAGACAGTCTCAACCATATTTCTTTCCTACTA
AAACACCTTctaattcaatgaaatcacAATCAACTTCCAAAGAGATTCTA
CCTGCACCCATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062294-exon-scaffold_362-1491911889:12993..14060 | TCONS_00062294-exon-scaffold_362-1491911889:12993..14060 | Clytia hemisphaerica | exon |
| TCONS_00062294-exon-scaffold_362-1510915933:12993..14060 | TCONS_00062294-exon-scaffold_362-1510915933:12993..14060 | Clytia hemisphaerica | exon |
| TCONS_00062294-exon-scaffold_362-1575043694:12993..14060 | TCONS_00062294-exon-scaffold_362-1575043694:12993..14060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:12993..14060 . |
Blast
The following BLAST results are available for this feature:
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