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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062845 ID=TCONS_00062845|Name=TCONS_00062845|organism=Clytia hemisphaerica|type=transcript|length=2969bp
GCTCGTTCGAAAATCGAATGCACTTTACTGTGTatgaataagaaatttaa
agCAGCTTTAATGGTAAATGGTACCAAATGTTACTGCTCAAACGAAGAAA
CATCTTGGTCACAACAAGAGAATGGTGCTACTAGCAGTACACTGATTAAG
AAGttcTGTCTAGATGAAACAATTGAAAACGATGGTTCAAGTGAAGAAAA
GCCAGCCAAGTCATGTAAATCTTTAAAAGCTTCTTATCCAAGTCTAGGCT
CAGGATTCTATTGGATTCAAATGGATATACCAGTACAGGTATATTGTGAC
CAAGATTTTGATCAAGGTGGATGGATGTTAGCAACCAATTTCAGTATTTC
ACAATCAGAGCAATCAGCAGTTACCATTCCAACATACAGCCAAAATATGG
CTGATCTCCTTAATGTCAATAATGGAAAATACATTGCTGACCCTCGAATG
TTGACACAAATATCTCGTCATATTAATATTAAACAATTTCGTATTTATTG
CATTAAAGATAGAATTGGTCACACACTTCATTTCAAAAGTCAGTTGAACC
TATATGGTAAGTCATTTCGTGATTCAATTTTCGACTTTACAATCAAATGG
CTTAACGCTACCTCAAAACCACAATGTACtcaattccttcaaaagtatcC
AGAGGACAATTCCAACTTGATGGCTGACTGTAGTAGATGGACCATACCAC
ACGATGAAGATATCAACTCTGGTAATACTTTGTATAGACATATTCTATAC
GTTGAAACAAATTATCATGTTCAGTTAATACCAGGTCGGATTGAATGTGA
CGACACGGAGCTTGTTGACGATAACAATAACGCAGGAATATGGCAATACT
ACGTcagatgaatttgaaaaaacctccaaactcgaacccagtccttGGAT
CGctttttaattgattttgataGCGCTCACGAAGGGATTGTACCAGCGCT
Cgtgagtaaaatcaaaaagtgttgaaagtggctctgggtaaaaaattgaa
aagtttttttcatattttgagatCACAGTACTCGATTAACACAtgtttat
aagaatggtgttatTCCattaacttttttgataaaaataatccaaaaata
ttcttagctAAATGAACCTGAATGAACGGAGTTTCATTCCGATTCGCTAG
GACCTATTACTAACCTTGCAGTTATTTCACAACTTTATAGAGTGTAAAAA
AATCAGCATCAGCATCAACGTAATCCAGAGTAAAATTTCACAATTTCAGG
gctatttgtaaaaaaataagagTATTATTTAGTATAATGTAGTTTGAGAA
ATATACAAATCTCTAAGAAAAATAACCACAGATAATTAATAGGGTGAGAG
AGCACATCTTGTTGAAATTCATTCCTACGTAGGTATTATGACTATGTCTC
TCATTGATTTATTGTTTCCTCCAAGTGATTGCCAGGTTACCCTAaaaggg
aaaaatttcgtccGGAAAAGTGACGTGCTTTTCAGGAAGTCTTgcttgaa
atttcattttccgACGAAAACTACCTGCTTTATCTATTTAAGAGCTCTCT
CCAAATTCTGCATCGTgcaatattttcataattttccccGATGCGAACCC
CCGtgttttttaaagaattctctcaaaaatatcaGCATCGTgtaatattt
tcataattttccccGATGCGAACCCCCGtgttttttaaagaattctctca
aaaatatcaGCATCGTGTAATATTTTCATGACTCTCCCCGATGCTTAACC
CCCATGTTAAGAATTGTCTCCAAATTCAGCATCGTgtaatattttcataa
tttttgttttgatcgaAAACTTTTGTTGTAATGGAATTCGTCTCATTTGA
GGTGCTAAACTGCGAAGAAATAAGAGATCTTCGTCTTCGTTGTGAACTAC
ACGATCATTATATTGGCGGGAAGTTGATGTGGAAGGGGGACAAGTTTCTT
CTGCATTCTCTAAAGGGCGTTTTCGTCTTATTGTTGACGAAGACGGTAGT
TCTATGAAAGATTGTGACGGTCGTGTTTGTTGTGGATGATTTTCTATAAC
AATTTGTTGTTGCTGCTGTTGCTGATCACTTGTAGCGTATGTTCTGGATG
GTGCTTTTGAGGTGGACCCGTAAGTCGTAATTTGGAAATTTGGATGTTGT
TGTGATTGTGGAGGCGTCGTGGCGATGCGTGTGTAAGTTGACCCTTGTTG
TTGTGAATGTTGTACATTTGCCGAAATATATCCGACTCCGTTCGAGTTTG
AATCGTTATCTATGAACTCGATCTCGTTATCATTTCGAACAATGTAAGGT
ATTGGGTTTGCAGTTTGTTGTTGTGGTGATCTCGTCGTTGTCGAATTATG
AAAAACCGCGAACGACGGAGGTTGCTGATGATTAGTCCCGATTGTAGTCT
TATTGTCGGCGATGGCACCATAGTTTTCTTCGTCATAGTCAAATTTATGT
TTGATGTAAGGCTTTAACCAGGCTAAAAAGCCCCATGTTGATTTCTCTAG
TGTTCTGATGCTGCCATCTTGCCTCTTGATACTTCTTCGAAGAAATCGCC
CAAAAGCCGTTCGAACGTTCTTATAACGCCTTGTTAGTTCCCAGACTGGG
ATATCACCTCCGAAACTAATCGCGATTTTACGCCATGCCTCGTCTTTAGC
GTCTTTCGCCCGTTGATCGTGAGAGTTTGAACACTCATACAAAATTTTGT
GTTGCCGAATTAAGCCCATCAATCGTTGGTTGTCGATTCCGTTTAAACTC
CTATCGGTCATGTAGTCTGCCGTGAATGAGTCGTCGCTCATTGTTGGGCC
TGGTGGGGCAATGGAACTCATATTTCCCCCAATATTACCCATATTTTCAG
AAGATTCGTCAGGAGACCCTGAAGTGGTGTCTGTGTTCTCCgccattttt
gttgttttggtcGTCGCAATCGTTCGAACCCGGTTGCGGAGACGATACGA
AATGTCGCGCGTCTGTTTT Run BLAST on NCBI transcript from alignment at scaffold_372:319891..323816- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062845 ID=TCONS_00062845|Name=TCONS_00062845|organism=Clytia hemisphaerica|type=transcript|length=3926bp|location=Sequence derived from alignment at scaffold_372:319891..323816- (Clytia hemisphaerica)
GCTCGTTCGAAAATCGAATGCACTTTACTGTGTATGAATAAGAAATTTAA
AGCAGCTTTAATGGTAAATGGTACCAAATGTTACTGCTCAAACGAAGAAA
CATCTTGGTCACAACAAGAGAATGGTGCTACTAGCAGTACACTGATTAAG
AAGGTTAGTCTATCTTCCTTTGTTGGTACCCCTGACAGTAGCGTAGACAA
GATGTACCGAAACATTGCATTATTGTTTTGATTCTTTGACGCCACTTTTC
TTTGTACAAAACTCTCTAAGAGATTCAGTGACGTAAAAAACTCGCCATGA
TTTTAGGTGCAAACCGGCCAGAGAAATCATAGTGGTAGATTAACAATCAG
GATTGACAGGAGCTGGCTATGATCTGACCTGGTTGTTCAGCCAAAACATT
CAAAAACCGCGTGAACTTTTAGCCAAAAAGCGAAAGCGATTGGGTTCTAA
TGTCTAAGTTTATGATAGATGTTTGTTTCTGTGCGATTGTCTTTCTTTAG
CTAATCACCGCGCTAAAAAGCTCATTTTGACATTCATCCCTAATCTGGAA
AGAAACAATCTCCCATTCTATGAACACTATTTGGCAAAAATCAGAGGATA
GAGAAAGGAGCATACCTTTTTGACTTTCAAGTATCCTGAATTGGGTTTAA
AAAAACTTTATTTCGTATAGTAGGAATAGACATTCTAATCATTTCATTTT
TAGTTCTGTCTAGATGAAACAATTGAAAACGATGGTTCAAGTGAAGAAAA
GCCAGCCAAGTCATGTAAATCTTTAAAAGCTTCTTATCCAAGTCTAGGCT
CAGGATTCTATTGGATTCAAATGGATATACCAGTACAGGTATATTGTGAC
CAAGATTTTGATCAAGGTACAACCTTTATTTCCTTGTTTCTGTGCCTCAA
TGGAGCTCGATAATTACAAATCTATATATTAACGTTTAGGGAGGGGGTAT
AACTGAAACAATTTGGAACAACCCGCAATTTTAACCTGCAAATCGAGGGA
GGGTAAAAGTGTGGATTTACCCTCGTTCTCAGTCAGTCAGGATCATGTTC
TGTGCCTCAATGGAGCTCGCGAATAACAGATTTACATATTATTGTTTAGG
GAGGGGGATAACTGAAACAATTTGGACCAACCCGCAATTTTGACCTGCGA
ATGGATTTACCCTCGTTCTCAGTCAGTCAGGATCATGAAGAAATTAGGTT
TTAACTTAAAACTTTTTGATTTAGAATCAATCCTCGTATAATCATTTTCC
TATTTATTTTCTTTGTTTTGCAGGTGGATGGATGTTAGCAACCAATTTCA
GTATTTCACAATCAGAGCAATCAGCAGTTACCATTCCAACATACAGCCAA
AATATGGCTGATCTCCTTAATGTCAATAATGGAAAATACATTGCTGACCC
TCGAATGTTGACACAAATATCTCGTCATATTAATATTAAACAATTTCGTA
TTTATTGCATTAAAGATAGAATTGGTCACACACTTCATTTCAAAAGTCAG
TTGAACCTATATGGTAAGTCATTTCGTGATTCAATTTTCGACTTTACAAT
CAAATGGCTTAACGCTACCTCAAAACCACAATGTACTCAATTCCTTCAAA
AGTATCCAGAGGACAATTCCAACTTGATGGCTGACTGTAGTAGATGGACC
ATACCACACGATGAAGATATCAACTCTGGTAATACTTTGTATAGACATAT
TCTATACGTTGAAACAAATTATCATGTTCAGTTAATACCAGGTCGGATTG
AATGTGACGACACGGAGCTTGTTGACGATAACAATAACGCAGGAATATGG
CAATACTACGTCAGATGAATTTGAAAAAACCTCCAAACTCGAACCCAGTC
CTTGGATCGCTTTTTAATTGATTTTGATAGCGCTCACGAAGGGATTGTAC
CAGCGCTCGTGAGTAAAATCAAAAAGTGTTGAAAGTGGCTCTGGGTAAAA
AATTGAAAAGTTTTTTTCATATTTTGAGATCACAGTACTCGATTAACACA
TGTTTATAAGAATGGTGTTATTCCATTAACTTTTTTGATAAAAATAATCC
AAAAATATTCTTAGCTAAATGAACCTGAATGAACGGAGTTTCATTCCGAT
TCGCTAGGACCTATTACTAACCTTGCAGTTATTTCACAACTTTATAGAGT
GTAAAAAAATCAGCATCAGCATCAACGTAATCCAGAGTAAAATTTCACAA
TTTCAGGGCTATTTGTAAAAAAATAAGAGTATTATTTAGTATAATGTAGT
TTGAGAAATATACAAATCTCTAAGAAAAATAACCACAGATAATTAATAGG
GTGAGAGAGCACATCTTGTTGAAATTCATTCCTACGTAGGTATTATGACT
ATGTCTCTCATTGATTTATTGTTTCCTCCAAGTGATTGCCAGGTTACCCT
AAAAGGGAAAAATTTCGTCCGGAAAAGTGACGTGCTTTTCAGGAAGTCTT
GCTTGAAATTTCATTTTCCGACGAAAACTACCTGCTTTATCTATTTAAGA
GCTCTCTCCAAATTCTGCATCGTGCAATATTTTCATAATTTTCCCCGATG
CGAACCCCCGTGTTTTTTAAAGAATTCTCTCAAAAATATCAGCATCGTGT
AATATTTTCATAATTTTCCCCGATGCGAACCCCCGTGTTTTTTAAAGAAT
TCTCTCAAAAATATCAGCATCGTGTAATATTTTCATGACTCTCCCCGATG
CTTAACCCCCATGTTAAGAATTGTCTCCAAATTCAGCATCGTGTAATATT
TTCATAATTTTTGTTTTGATCGAAAACTTTTGTTGTAATGGAATTCGTCT
CATTTGAGGTGCTAAACTGCGAAGAAATAAGAGATCTTCGTCTTCGTTGT
GAACTACACGATCATTATATTGGCGGGAAGTTGATGTGGAAGGGGGACAA
GTTTCTTCTGCATTCTCTAAAGGGCGTTTTCGTCTTATTGTTGACGAAGA
CGGTAGTTCTATGAAAGATTGTGACGGTCGTGTTTGTTGTGGATGATTTT
CTATAACAATTTGTTGTTGCTGCTGTTGCTGATCACTTGTAGCGTATGTT
CTGGATGGTGCTTTTGAGGTGGACCCGTAAGTCGTAATTTGGAAATTTGG
ATGTTGTTGTGATTGTGGAGGCGTCGTGGCGATGCGTGTGTAAGTTGACC
CTTGTTGTTGTGAATGTTGTACATTTGCCGAAATATATCCGACTCCGTTC
GAGTTTGAATCGTTATCTATGAACTCGATCTCGTTATCATTTCGAACAAT
GTAAGGTATTGGGTTTGCAGTTTGTTGTTGTGGTGATCTCGTCGTTGTCG
AATTATGAAAAACCGCGAACGACGGAGGTTGCTGATGATTAGTCCCGATT
GTAGTCTTATTGTCGGCGATGGCACCATAGTTTTCTTCGTCATAGTCAAA
TTTATGTTTGATGTAAGGCTTTAACCAGGCTAAAAAGCCCCATGTTGATT
TCTCTAGTGTTCTGATGCTGCCATCTTGCCTCTTGATACTTCTTCGAAGA
AATCGCCCAAAAGCCGTTCGAACGTTCTTATAACGCCTTGTTAGTTCCCA
GACTGGGATATCACCTCCGAAACTAATCGCGATTTTACGCCATGCCTCGT
CTTTAGCGTCTTTCGCCCGTTGATCGTGAGAGTTTGAACACTCATACAAA
ATTTTGTGTTGCCGAATTAAGCCCATCAATCGTTGGTTGTCGATTCCGTT
TAAACTCCTATCGGTCATGTAGTCTGCCGTGAATGAGTCGTCGCTCATTG
TTGGGCCTGGTGGGGCAATGGAACTCATATTTCCCCCAATATTACCCATA
TTTTCAGAAGATTCGTCAGGAGACCCTGAAGTGGTGTCTGTGTTCTCCGC
CATTTTTGTTGTTTTGGTCGTCGCAATCGTTCGAACCCGGTTGCGGAGAC
GATACGAAATGTCGCGCGTCTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062845-exon-scaffold_372-1575043694:323664..323816 | TCONS_00062845-exon-scaffold_372-1575043694:323664..323816 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1575043694:322951..323113 | TCONS_00062845-exon-scaffold_372-1575043694:322951..323113 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1575043694:319891..322543 | TCONS_00062845-exon-scaffold_372-1575043694:319891..322543 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1510915933:323664..323816 | TCONS_00062845-exon-scaffold_372-1510915933:323664..323816 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1510915933:322951..323113 | TCONS_00062845-exon-scaffold_372-1510915933:322951..323113 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1510915933:319891..322543 | TCONS_00062845-exon-scaffold_372-1510915933:319891..322543 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1491911889:323664..323816 | TCONS_00062845-exon-scaffold_372-1491911889:323664..323816 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1491911889:322951..323113 | TCONS_00062845-exon-scaffold_372-1491911889:322951..323113 | Clytia hemisphaerica | exon |
| TCONS_00062845-exon-scaffold_372-1491911889:319891..322543 | TCONS_00062845-exon-scaffold_372-1491911889:319891..322543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:319891..323816 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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