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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062846 ID=TCONS_00062846|Name=TCONS_00062846|organism=Clytia hemisphaerica|type=transcript|length=1820bp
CGGAATCAAAGGATTCAAGTAAAGAttcaaaaaGTTACGATTGGACCCTC
GTACCAATGCCCGTTCGAACTGGACCCAATGGTCGTGCAGCACGTCGTCA
TGTTAAACGCCCCATGAATGCTTTTATGGTATGGGCGCAGGCCGCCCGCC
GTAAACTGGCAGATCAATATCCACATTTACATAATGCGGAACTGAGCAAA
ACATTAGGGCGTTTATGGCGAATGCTTAGTGAGGAGGAAAAGAAACCGTT
TATGGATGAAGCGGAGAGACTTCGACTTCAACATAAGAAAGATCACCCTG
ACTATAAGTACCAACCAAGACGTAAAAAGCAGTCCAAAGATGGCTTGCCT
GATAACAATGAACAGGAAATTACAGCTTCAGATTTACTCAGAGTTATCAA
AGGAGACAAAGGTGCAACACTCACCAAACAGCGAACCGAGAGCACTTCCG
ATTATTCCGAAGGCCAAAGTCCACAAATGAGCCCCTACCCTGAATGTAGC
CCAAAGTCTTCGTGCTCTTCCTCAAACCCCTTTAGCCCAAACGAAATCGG
CAGCAACAAGAACAGTGATAATACAGGACAAACATCTGTAACGGAGCCAA
TAGACCTTCCAAACGTCTCTTTAGAATCAATGATCAAAAGCAACATCCAA
TGCATCGGTAGTAAACCAGCTATCAACGAGCTCGACATCCATTCGCTAGA
CCAATACTTGCCAACCACTGAAGGATTCAATTTCGAACAAAAGACAACAC
AATCGTCATCAACTAAAACCCAAGCAGTCTACAATAAGATGCCCTCATAT
CAATATCCATCAAGCATCACCAGAAATGAATATTCACCAACCTATTATCA
AATGAACACCATTGATTCCCAAGTATCTGCATCATCAACCAGGCATTACC
GCGCTTCAAACAGATACAATCCATACCAATACGACTCAACAAAATCTTAC
ACCAATATGATGGGGGTTGACTGTAATAACCAAAATTTAAACTTCAACCA
ATATCCATCAACAAGTCCAACAATCAACACCAATATCCCAACAACATGTA
AACAAGATAACTTTGTTTTAAGTGGTAACACTTCAACATGTTTATACAGT
AATGTTTCGAATCATCAACAACATTATAACAACACGTTGCAACAACAACA
GCAGAATGCAACAAATCTGCAACAACAAAACACAACAAATTATACTGACT
GCTCTCTAGTAGGTGGATATACATCTTTCACAAACGCTCAACAGCAACGA
ACCTCACCTGTCAGCTCAAACCAACAAATTCAAAATCCAAACAATATTAC
AATCAATCAAAATGTCACAAttaatcaacaacaacaacatcagCAACCAA
TTACATGTTGGCAATCTTCGATGTATACTGACTCTATTTATCCAAATTCT
GGCGGATATAATAGACTGTAAAAGTGAAATAAACAGACTTTATACATACT
TTCTAGTCTGGTGAATATTTTCACAGAAACGAAAAGCTCGAACAATAGAT
TAGATTGTTTTCAGTAATATACAATCTGACATTATTGATACAACATTTTG
GTATGTAATATATGGCCcttgtaaattattttttattgtgactgctaaaa
atagacattgactGTCTATACACTTTATATAGATAGCCTCAAAGTACTTA
ATCATTATCATAAATGCAATTAGCTTGGTTTTTAGAggttatttttgaat
aaaacacttttttgaaattgtaattTAATGACCACaatattcttgatatt
ttttctgGCTGGAattaattttgtttgtttgtttttatcgtTTGTTTTGT
ATAGGTTATTGTGAAATAGC Run BLAST on NCBI transcript from alignment at scaffold_372:327994..330193- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062846 ID=TCONS_00062846|Name=TCONS_00062846|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at scaffold_372:327994..330193- (Clytia hemisphaerica)
CGGAATCAAAGGATTCAAGTAAAGATTCAAAAAGTAAAAGATTTTAATAA
ATGTGGCGTTACTTTTTGGTGCAATAGGTTAATCACAATCATCTAATGTC
ACTAAAACGATCTTAGTTCAAGATTAGAGTCATGCAATGTTGCTTGAACT
GGGTAGCGGGGAAGAATCTCATTTTTTTATTGAGCGCTTGATCGAGACCT
AAAATCAATCGCATAATTATTATACTAGATTAATGTCTCTGACGTACTTT
TTCCTTTTTAGAACGAACAGGGTTTTGCTCTGTTGATTACACTTGAAATT
AAAGTGTAGAGCTAGAAAAAAGAGGGCTTTTTTTAACATCTAGACTCGGA
TAACTTGTAGAACTGTATCATGACAATCTGAAATAATTAATTATAATATC
CATCTATTTCCAGGTTACGATTGGACCCTCGTACCAATGCCCGTTCGAAC
TGGACCCAATGGTCGTGCAGCACGTCGTCATGTTAAACGCCCCATGAATG
CTTTTATGGTATGGGCGCAGGCCGCCCGCCGTAAACTGGCAGATCAATAT
CCACATTTACATAATGCGGAACTGAGCAAAACATTAGGGCGTTTATGGCG
AATGCTTAGTGAGGAGGAAAAGAAACCGTTTATGGATGAAGCGGAGAGAC
TTCGACTTCAACATAAGAAAGATCACCCTGACTATAAGTACCAACCAAGA
CGTAAAAAGCAGTCCAAAGATGGCTTGCCTGATAACAATGAACAGGAAAT
TACAGCTTCAGATTTACTCAGAGTTATCAAAGGAGACAAAGGTGCAACAC
TCACCAAACAGCGAACCGAGAGCACTTCCGATTATTCCGAAGGCCAAAGT
CCACAAATGAGCCCCTACCCTGAATGTAGCCCAAAGTCTTCGTGCTCTTC
CTCAAACCCCTTTAGCCCAAACGAAATCGGCAGCAACAAGAACAGTGATA
ATACAGGACAAACATCTGTAACGGAGCCAATAGACCTTCCAAACGTCTCT
TTAGAATCAATGATCAAAAGCAACATCCAATGCATCGGTAGTAAACCAGC
TATCAACGAGCTCGACATCCATTCGCTAGACCAATACTTGCCAACCACTG
AAGGATTCAATTTCGAACAAAAGACAACACAATCGTCATCAACTAAAACC
CAAGCAGTCTACAATAAGATGCCCTCATATCAATATCCATCAAGCATCAC
CAGAAATGAATATTCACCAACCTATTATCAAATGAACACCATTGATTCCC
AAGTATCTGCATCATCAACCAGGCATTACCGCGCTTCAAACAGATACAAT
CCATACCAATACGACTCAACAAAATCTTACACCAATATGATGGGGGTTGA
CTGTAATAACCAAAATTTAAACTTCAACCAATATCCATCAACAAGTCCAA
CAATCAACACCAATATCCCAACAACATGTAAACAAGATAACTTTGTTTTA
AGTGGTAACACTTCAACATGTTTATACAGTAATGTTTCGAATCATCAACA
ACATTATAACAACACGTTGCAACAACAACAGCAGAATGCAACAAATCTGC
AACAACAAAACACAACAAATTATACTGACTGCTCTCTAGTAGGTGGATAT
ACATCTTTCACAAACGCTCAACAGCAACGAACCTCACCTGTCAGCTCAAA
CCAACAAATTCAAAATCCAAACAATATTACAATCAATCAAAATGTCACAA
TTAATCAACAACAACAACATCAGCAACCAATTACATGTTGGCAATCTTCG
ATGTATACTGACTCTATTTATCCAAATTCTGGCGGATATAATAGACTGTA
AAAGTGAAATAAACAGACTTTATACATACTTTCTAGTCTGGTGAATATTT
TCACAGAAACGAAAAGCTCGAACAATAGATTAGATTGTTTTCAGTAATAT
ACAATCTGACATTATTGATACAACATTTTGGTATGTAATATATGGCCCTT
GTAAATTATTTTTTATTGTGACTGCTAAAAATAGACATTGACTGTCTATA
CACTTTATATAGATAGCCTCAAAGTACTTAATCATTATCATAAATGCAAT
TAGCTTGGTTTTTAGAGGTTATTTTTGAATAAAACACTTTTTTGAAATTG
TAATTTAATGACCACAATATTCTTGATATTTTTTCTGGCTGGAATTAATT
TTGTTTGTTTGTTTTTATCGTTTGTTTTGTATAGGTTATTGTGAAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062846-exon-scaffold_372-1575043694:330161..330193 | TCONS_00062846-exon-scaffold_372-1575043694:330161..330193 | Clytia hemisphaerica | exon |
| TCONS_00062846-exon-scaffold_372-1575043694:327994..329780 | TCONS_00062846-exon-scaffold_372-1575043694:327994..329780 | Clytia hemisphaerica | exon |
| TCONS_00062846-exon-scaffold_372-1510915933:330161..330193 | TCONS_00062846-exon-scaffold_372-1510915933:330161..330193 | Clytia hemisphaerica | exon |
| TCONS_00062846-exon-scaffold_372-1510915933:327994..329780 | TCONS_00062846-exon-scaffold_372-1510915933:327994..329780 | Clytia hemisphaerica | exon |
| TCONS_00062846-exon-scaffold_372-1491911889:330161..330193 | TCONS_00062846-exon-scaffold_372-1491911889:330161..330193 | Clytia hemisphaerica | exon |
| TCONS_00062846-exon-scaffold_372-1491911889:327994..329780 | TCONS_00062846-exon-scaffold_372-1491911889:327994..329780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:327994..330193 - |
Blast
BLAST of TCONS_00062846 vs. Swiss-Prot (Human)
Match: SOX9 (Transcription factor SOX-9 OS=Homo sapiens GN=SOX9 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.780e-49 Identity = 108/233 (46.35%), Postives = 138/233 (59.23%), Query Frame = 3
Query: 42 WTLVPMPVRTGPNGRAARR-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGRLWRMLSEEEKKPFMDEAERLRLQHKKDHPDYKYQPRRKKQSKDGLPDNNEQ----EITASDLLRVIKGDKGATLTKQRTESTSDYSEGQSP-QMXXXXXXXXXXXXXXXXXXXXXXIGSNKNSDNTGQTSVTEPIDLPNV---SLESMIKSNIQCIGSKPAINELDIHSLDQYLP 713
WTLVPMPVR NG + + HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLG+LWR+L+E EK+PF++EAERLR+QHKKDHPDYKYQPRR+K K+G + E I+ + + + ++ D S+S SE SP + S + P + P + + + PID +V L S + SNI+ D++ DQYLP
Sbjct: 86 WTLVPMPVRV--NGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADS--------PHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIET---------FDVNEFDQYLP 299
The following BLAST results are available for this feature:
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